Wall clock time and date at job start Wed Apr 1 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47253 * 2 1 4 4 N 1.46501 * 109.47225 * 119.99559 * 2 1 3 5 5 C 1.34772 * 120.00057 * 275.00378 * 4 2 1 6 6 O 1.21598 * 120.00328 * 359.97438 * 5 4 2 7 7 C 1.47435 * 119.99837 * 180.02562 * 5 4 2 8 8 C 1.41292 * 126.41293 * 359.68460 * 7 5 4 9 9 N 1.30453 * 108.01825 * 179.86011 * 8 7 5 10 10 N 1.39938 * 108.89818 * 0.40296 * 9 8 7 11 11 C 1.46497 * 125.75216 * 179.74101 * 10 9 8 12 12 C 1.34258 * 108.49049 * 359.74240 * 10 9 8 13 13 C 1.50697 * 126.28887 * 180.02562 * 12 10 9 14 14 C 1.53000 * 117.49859 * 310.75670 * 13 12 10 15 15 C 1.52994 * 60.00446 * 252.51300 * 14 13 12 16 16 C 1.52999 * 109.47138 * 239.99628 * 2 1 3 17 17 H 1.08994 * 109.49932 * 300.06437 * 16 2 1 18 18 C 1.53046 * 109.52294 * 60.14899 * 16 2 1 19 19 C 1.53034 * 109.53711 * 181.33214 * 18 16 2 20 20 C 1.53623 * 109.24253 * 298.50822 * 19 18 16 21 21 N 1.46929 * 108.54528 * 54.85719 * 20 19 18 22 22 C 1.36935 * 120.63057 * 126.36399 * 21 20 19 23 23 H 1.07995 * 120.00112 * 215.96075 * 22 21 20 24 24 C 1.38817 * 119.99741 * 35.96658 * 22 21 20 25 25 N 1.31615 * 119.99930 * 23.23656 * 24 22 21 26 26 Si 1.86799 * 119.99721 * 202.96221 * 24 22 21 27 27 H 1.48501 * 109.47031 * 59.99989 * 26 24 22 28 28 H 1.48500 * 109.46913 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47294 * 299.99864 * 26 24 22 30 30 C 1.46921 * 118.73461 * 306.09917 * 21 20 19 31 31 H 1.09000 * 109.47087 * 300.00042 * 1 2 3 32 32 H 1.09000 * 109.46718 * 60.00321 * 1 2 3 33 33 H 1.09003 * 109.46795 * 179.97438 * 1 2 3 34 34 H 0.97002 * 119.99711 * 95.00099 * 4 2 1 35 35 H 1.07997 * 125.99190 * 359.97438 * 8 7 5 36 36 H 1.09008 * 109.46877 * 273.25488 * 11 10 9 37 37 H 1.09002 * 109.47208 * 33.25182 * 11 10 9 38 38 H 1.08999 * 109.47065 * 153.25596 * 11 10 9 39 39 H 1.08996 * 115.55017 * 96.46716 * 13 12 10 40 40 H 1.09006 * 117.49799 * 0.02562 * 14 13 12 41 41 H 1.09001 * 117.49865 * 145.01962 * 14 13 12 42 42 H 1.08999 * 117.50090 * 252.51723 * 15 14 13 43 43 H 1.08999 * 117.50169 * 107.48796 * 15 14 13 44 44 H 1.08998 * 109.45529 * 301.34993 * 18 16 2 45 45 H 1.08998 * 109.46304 * 61.30795 * 18 16 2 46 46 H 1.09002 * 109.49888 * 58.58553 * 19 18 16 47 47 H 1.09005 * 109.50073 * 178.64804 * 19 18 16 48 48 H 1.08999 * 109.73822 * 295.11853 * 20 19 18 49 49 H 1.09002 * 109.66189 * 174.55134 * 20 19 18 50 50 H 0.96997 * 120.00250 * 7.45448 * 25 24 22 51 51 H 1.09004 * 109.58830 * 173.64899 * 30 21 20 52 52 H 1.09005 * 109.58588 * 294.06588 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8583 1.1618 2.4116 7 6 2.6391 -0.7130 3.5608 8 6 3.0068 -2.0741 3.6521 9 7 3.3910 -2.3071 4.8768 10 7 3.2801 -1.1260 5.6190 11 6 3.6096 -0.9727 7.0382 12 6 2.8210 -0.1569 4.8111 13 6 2.5540 1.2748 5.1981 14 6 1.7239 1.5228 6.4592 15 6 1.1153 1.7821 5.0797 16 6 2.0400 -0.7213 -1.2492 17 1 1.6760 -1.7487 -1.2502 18 6 1.5336 0.0013 -2.4996 19 6 2.0159 -0.7390 -3.7492 20 6 3.5519 -0.7359 -3.7782 21 7 4.0443 -1.3013 -2.5146 22 6 4.9308 -2.3449 -2.5157 23 1 4.8665 -3.1089 -1.7552 24 6 5.9123 -2.4208 -3.4945 25 7 6.3011 -1.3313 -4.1224 26 14 6.6865 -4.0679 -3.9151 27 1 5.6344 -5.0029 -4.3887 28 1 7.6991 -3.8801 -4.9849 29 1 7.3409 -4.6304 -2.7065 30 6 3.5720 -0.7216 -1.2498 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6317 1.1527 35 1 2.9770 -2.7948 2.8483 36 1 2.7427 -1.2388 7.6432 37 1 4.4435 -1.6278 7.2904 38 1 3.8875 0.0623 7.2370 39 1 3.3557 1.9791 4.9763 40 1 1.3714 0.6502 7.0093 41 1 1.9797 2.3903 7.0676 42 1 0.9707 2.8201 4.7804 43 1 0.3620 1.0802 4.7219 44 1 0.4439 0.0245 -2.4893 45 1 1.9182 1.0211 -2.5106 46 1 1.6521 -1.7662 -3.7266 47 1 1.6350 -0.2376 -4.6389 48 1 3.9159 0.2857 -3.8878 49 1 3.9042 -1.3431 -4.6120 50 1 5.9832 -0.4631 -3.8293 51 1 3.9376 -1.3193 -0.4148 52 1 3.9377 0.3011 -1.1575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025636798.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:52 Heat of formation + Delta-G solvation = 73.168771 kcal Electronic energy + Delta-G solvation = -31381.778133 eV Core-core repulsion = 27383.822851 eV Total energy + Delta-G solvation = -3997.955282 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.69036 -39.41716 -37.81849 -37.26729 -35.19882 -33.62614 -33.01331 -31.09713 -30.37731 -30.15391 -28.45644 -27.26317 -25.05174 -24.14231 -23.22395 -22.80749 -22.19020 -21.90373 -20.78101 -20.09902 -19.61560 -18.98872 -17.67747 -17.21375 -16.45865 -15.84357 -15.75366 -15.17634 -14.70595 -14.66472 -14.49602 -14.17446 -14.08411 -13.66438 -13.62426 -13.57805 -13.32906 -13.02923 -12.88394 -12.77234 -12.46245 -12.30571 -12.17551 -11.81171 -11.78290 -11.52216 -11.36508 -11.05908 -10.94161 -10.87568 -10.64043 -10.47664 -10.29512 -10.16330 -10.03298 -9.89947 -9.78818 -9.60111 -9.52132 -9.19978 -8.90037 -8.61133 -8.32703 -6.79084 -5.98752 -3.29659 1.37605 2.09930 2.10171 3.39611 3.48751 3.50715 3.53220 3.59521 3.71578 4.09624 4.24599 4.54360 4.60053 4.68629 4.76072 4.83237 4.91395 4.97123 5.04687 5.13157 5.27046 5.29115 5.30818 5.36874 5.40934 5.53556 5.57293 5.64641 5.67896 5.77060 5.78087 5.78773 5.90820 6.01968 6.06433 6.12644 6.25011 6.26624 6.31208 6.40978 6.52275 6.55560 6.60762 6.70252 6.76355 6.83657 6.92744 7.11695 7.24013 7.37820 7.79790 8.10172 8.51446 8.63591 9.17450 9.86763 10.36584 11.23462 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.002899 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.180191 B = 9656.555313 C =11245.490709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.152 3.848 3 H 0.085 0.915 4 N -0.717 5.717 5 C 0.595 3.405 6 O -0.545 6.545 7 C -0.285 4.285 8 C 0.084 3.916 9 N -0.297 5.297 10 N -0.361 5.361 11 C 0.097 3.903 12 C 0.182 3.818 13 C -0.098 4.098 14 C -0.187 4.187 15 C -0.120 4.120 16 C -0.110 4.110 17 H 0.071 0.929 18 C -0.101 4.101 19 C -0.137 4.137 20 C 0.153 3.847 21 N -0.597 5.597 22 C -0.351 4.351 23 H 0.050 0.950 24 C -0.019 4.019 25 N -0.912 5.912 26 Si 1.063 2.937 27 H -0.293 1.293 28 H -0.286 1.286 29 H -0.292 1.292 30 C 0.157 3.843 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.398 0.602 35 H 0.191 0.809 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.129 0.871 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.050 0.950 48 H 0.016 0.984 49 H 0.069 0.931 50 H 0.269 0.731 51 H 0.053 0.947 52 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.747 3.883 20.107 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.047 3.953 3 H 0.103 0.897 4 N -0.367 5.367 5 C 0.382 3.618 6 O -0.423 6.423 7 C -0.300 4.300 8 C -0.103 4.103 9 N -0.116 5.116 10 N -0.139 5.139 11 C -0.044 4.044 12 C 0.049 3.951 13 C -0.118 4.118 14 C -0.224 4.224 15 C -0.158 4.158 16 C -0.131 4.131 17 H 0.089 0.911 18 C -0.139 4.139 19 C -0.176 4.176 20 C 0.027 3.973 21 N -0.320 5.320 22 C -0.481 4.481 23 H 0.068 0.932 24 C -0.222 4.222 25 N -0.550 5.550 26 Si 0.892 3.108 27 H -0.220 1.220 28 H -0.211 1.211 29 H -0.219 1.219 30 C 0.031 3.969 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.232 0.768 35 H 0.208 0.792 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.146 0.854 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.068 0.932 48 H 0.034 0.966 49 H 0.088 0.912 50 H 0.079 0.921 51 H 0.072 0.928 52 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -10.367 3.049 20.076 22.799 hybrid contribution -1.095 0.700 0.498 1.392 sum -11.462 3.749 20.574 23.848 Atomic orbital electron populations 1.22198 0.95860 1.01760 1.02023 1.20972 0.93296 0.97438 0.83559 0.89686 1.45847 1.67494 1.14008 1.09380 1.17121 0.76866 0.85914 0.81904 1.90734 1.51381 1.15202 1.84998 1.20048 1.20216 0.94818 0.94905 1.24086 0.95943 0.95329 0.94968 1.77218 1.24912 1.04395 1.05078 1.48324 1.49290 1.06547 1.09783 1.21976 1.02594 1.04091 0.75704 1.20527 0.94317 0.90516 0.89720 1.20416 0.97997 0.90142 1.03222 1.23202 1.04367 1.03564 0.91316 1.22748 0.93690 1.02732 0.96649 1.21946 0.99388 0.99211 0.92567 0.91076 1.21431 0.98949 0.98935 0.94564 1.22132 0.99661 0.99733 0.96053 1.20992 0.89618 0.96479 0.90163 1.44058 1.50439 1.38390 0.99122 1.19871 1.09542 1.00829 1.17838 0.93234 1.25950 0.94154 1.04059 0.98049 1.70748 1.41941 0.98506 1.43841 0.83575 0.76078 0.74892 0.76216 1.21987 1.21131 1.21931 1.20895 0.89881 0.96091 0.90074 0.92599 0.91523 0.92799 0.76803 0.79215 0.90486 0.89010 0.88946 0.85351 0.89016 0.87921 0.87778 0.88695 0.92875 0.92620 0.92429 0.93152 0.96586 0.91249 0.92056 0.92850 0.96830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.14 37.16 0.34 -1.68 16 2 C 0.15 2.21 2.16 -67.93 -0.15 2.06 16 3 H 0.09 1.40 7.58 -51.93 -0.39 1.00 16 4 N -0.72 -9.92 4.47 -54.88 -0.25 -10.17 16 5 C 0.59 8.80 7.78 -12.52 -0.10 8.71 16 6 O -0.54 -9.10 14.13 5.28 0.07 -9.03 16 7 C -0.29 -3.84 6.13 -105.06 -0.64 -4.49 16 8 C 0.08 1.06 11.50 -16.98 -0.20 0.86 16 9 N -0.30 -3.88 12.50 30.86 0.39 -3.50 16 10 N -0.36 -3.99 3.98 -63.34 -0.25 -4.24 16 11 C 0.10 0.63 10.34 59.85 0.62 1.25 16 12 C 0.18 2.18 6.44 -81.60 -0.53 1.66 16 13 C -0.10 -0.97 4.82 -91.77 -0.44 -1.42 16 14 C -0.19 -1.31 9.13 -26.73 -0.24 -1.56 16 15 C -0.12 -1.15 8.70 -26.73 -0.23 -1.39 16 16 C -0.11 -1.82 1.97 -90.50 -0.18 -2.00 16 17 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.10 -1.63 4.86 -26.69 -0.13 -1.76 16 19 C -0.14 -2.52 6.10 -26.39 -0.16 -2.68 16 20 C 0.15 3.57 4.85 -3.48 -0.02 3.55 16 21 N -0.60 -14.80 2.72 -172.05 -0.47 -15.27 16 22 C -0.35 -9.74 9.40 -15.06 -0.14 -9.88 16 23 H 0.05 1.38 7.93 -52.49 -0.42 0.96 16 24 C -0.02 -0.53 4.69 -17.43 -0.08 -0.61 16 25 N -0.91 -27.49 12.69 55.49 0.70 -26.78 16 26 Si 1.06 25.21 29.98 -169.99 -5.10 20.11 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 30 C 0.16 3.28 5.55 -3.71 -0.02 3.26 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.79 6.41 -51.93 -0.33 0.45 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.40 4.98 7.37 -40.82 -0.30 4.68 16 35 H 0.19 1.90 7.50 -52.49 -0.39 1.51 16 36 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.43 7.23 -51.93 -0.38 0.06 16 39 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.09 0.60 7.73 -51.93 -0.40 0.20 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.74 6.37 -51.93 -0.33 0.40 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.02 0.39 7.89 -51.93 -0.41 -0.02 16 49 H 0.07 1.80 6.86 -51.93 -0.36 1.44 16 50 H 0.27 8.23 7.05 -40.82 -0.29 7.94 16 51 H 0.05 1.12 7.44 -51.93 -0.39 0.73 16 52 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 408.54 15.07 6.16 6.16 Total: -1.00 -33.85 408.54 -9.71 -43.57 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -8.68 Total: 5.26 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -2.30 Total: -6.11 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.12 Total: -59.96 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.07 Total: -9.03 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.10 Total: 20.11 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.85 -9.71 -43.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025636798.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.738 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds