Wall clock time and date at job start Wed Apr 1 2020 05:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47253 * 2 1 4 4 N 1.46501 * 109.47225 * 119.99559 * 2 1 3 5 5 C 1.34772 * 120.00057 * 275.00378 * 4 2 1 6 6 O 1.21598 * 120.00328 * 359.97438 * 5 4 2 7 7 C 1.47435 * 119.99837 * 180.02562 * 5 4 2 8 8 C 1.41292 * 126.41293 * 359.68460 * 7 5 4 9 9 N 1.30453 * 108.01825 * 179.86011 * 8 7 5 10 10 N 1.39938 * 108.89818 * 0.40296 * 9 8 7 11 11 C 1.46497 * 125.75216 * 179.74101 * 10 9 8 12 12 C 1.34258 * 108.49049 * 359.74240 * 10 9 8 13 13 C 1.50697 * 126.28887 * 180.02562 * 12 10 9 14 14 C 1.53000 * 117.49859 * 310.75670 * 13 12 10 15 15 C 1.52994 * 60.00446 * 252.51300 * 14 13 12 16 16 C 1.52999 * 109.47138 * 239.99628 * 2 1 3 17 17 H 1.08994 * 109.49932 * 300.06437 * 16 2 1 18 18 C 1.53046 * 109.52294 * 60.14899 * 16 2 1 19 19 C 1.53034 * 109.53711 * 181.33214 * 18 16 2 20 20 C 1.53623 * 109.24253 * 298.50822 * 19 18 16 21 21 N 1.46929 * 108.54528 * 54.85719 * 20 19 18 22 22 C 1.36935 * 120.63057 * 126.36399 * 21 20 19 23 23 H 1.07995 * 120.00112 * 215.96075 * 22 21 20 24 24 C 1.38817 * 119.99741 * 35.96658 * 22 21 20 25 25 N 1.31615 * 119.99930 * 23.23656 * 24 22 21 26 26 Si 1.86799 * 119.99721 * 202.96221 * 24 22 21 27 27 H 1.48501 * 109.47031 * 59.99989 * 26 24 22 28 28 H 1.48500 * 109.46913 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47294 * 299.99864 * 26 24 22 30 30 C 1.46921 * 118.73461 * 306.09917 * 21 20 19 31 31 H 1.09000 * 109.47087 * 300.00042 * 1 2 3 32 32 H 1.09000 * 109.46718 * 60.00321 * 1 2 3 33 33 H 1.09003 * 109.46795 * 179.97438 * 1 2 3 34 34 H 0.97002 * 119.99711 * 95.00099 * 4 2 1 35 35 H 1.07997 * 125.99190 * 359.97438 * 8 7 5 36 36 H 1.09008 * 109.46877 * 273.25488 * 11 10 9 37 37 H 1.09002 * 109.47208 * 33.25182 * 11 10 9 38 38 H 1.08999 * 109.47065 * 153.25596 * 11 10 9 39 39 H 1.08996 * 115.55017 * 96.46716 * 13 12 10 40 40 H 1.09006 * 117.49799 * 0.02562 * 14 13 12 41 41 H 1.09001 * 117.49865 * 145.01962 * 14 13 12 42 42 H 1.08999 * 117.50090 * 252.51723 * 15 14 13 43 43 H 1.08999 * 117.50169 * 107.48796 * 15 14 13 44 44 H 1.08998 * 109.45529 * 301.34993 * 18 16 2 45 45 H 1.08998 * 109.46304 * 61.30795 * 18 16 2 46 46 H 1.09002 * 109.49888 * 58.58553 * 19 18 16 47 47 H 1.09005 * 109.50073 * 178.64804 * 19 18 16 48 48 H 1.08999 * 109.73822 * 295.11853 * 20 19 18 49 49 H 1.09002 * 109.66189 * 174.55134 * 20 19 18 50 50 H 0.96997 * 120.00250 * 7.45448 * 25 24 22 51 51 H 1.09004 * 109.58830 * 173.64899 * 30 21 20 52 52 H 1.09005 * 109.58588 * 294.06588 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8583 1.1618 2.4116 7 6 2.6391 -0.7130 3.5608 8 6 3.0068 -2.0741 3.6521 9 7 3.3910 -2.3071 4.8768 10 7 3.2801 -1.1260 5.6190 11 6 3.6096 -0.9727 7.0382 12 6 2.8210 -0.1569 4.8111 13 6 2.5540 1.2748 5.1981 14 6 1.7239 1.5228 6.4592 15 6 1.1153 1.7821 5.0797 16 6 2.0400 -0.7213 -1.2492 17 1 1.6760 -1.7487 -1.2502 18 6 1.5336 0.0013 -2.4996 19 6 2.0159 -0.7390 -3.7492 20 6 3.5519 -0.7359 -3.7782 21 7 4.0443 -1.3013 -2.5146 22 6 4.9308 -2.3449 -2.5157 23 1 4.8665 -3.1089 -1.7552 24 6 5.9123 -2.4208 -3.4945 25 7 6.3011 -1.3313 -4.1224 26 14 6.6865 -4.0679 -3.9151 27 1 5.6344 -5.0029 -4.3887 28 1 7.6991 -3.8801 -4.9849 29 1 7.3409 -4.6304 -2.7065 30 6 3.5720 -0.7216 -1.2498 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6317 1.1527 35 1 2.9770 -2.7948 2.8483 36 1 2.7427 -1.2388 7.6432 37 1 4.4435 -1.6278 7.2904 38 1 3.8875 0.0623 7.2370 39 1 3.3557 1.9791 4.9763 40 1 1.3714 0.6502 7.0093 41 1 1.9797 2.3903 7.0676 42 1 0.9707 2.8201 4.7804 43 1 0.3620 1.0802 4.7219 44 1 0.4439 0.0245 -2.4893 45 1 1.9182 1.0211 -2.5106 46 1 1.6521 -1.7662 -3.7266 47 1 1.6350 -0.2376 -4.6389 48 1 3.9159 0.2857 -3.8878 49 1 3.9042 -1.3431 -4.6120 50 1 5.9832 -0.4631 -3.8293 51 1 3.9376 -1.3193 -0.4148 52 1 3.9377 0.3011 -1.1575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025636798.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:50 Heat of formation + Delta-G solvation = 52.772146 kcal Electronic energy + Delta-G solvation = -31382.662597 eV Core-core repulsion = 27383.822851 eV Total energy + Delta-G solvation = -3998.839746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.59082 -40.66195 -39.29760 -38.00723 -36.71129 -34.80682 -34.31189 -32.51079 -32.12812 -31.15620 -29.86383 -28.03865 -26.94458 -25.26202 -24.39144 -23.75105 -23.53478 -23.05472 -22.03603 -21.23745 -20.88289 -20.20454 -19.27839 -18.61218 -17.29437 -17.05219 -16.64961 -16.29646 -16.06031 -15.90675 -15.64147 -15.46741 -15.42275 -15.27669 -15.04601 -14.86866 -14.62675 -14.17403 -13.99491 -13.77098 -13.58760 -13.50714 -13.36076 -13.05620 -12.91805 -12.64715 -12.54335 -12.41810 -12.31806 -12.24754 -11.93669 -11.86204 -11.69175 -11.59613 -11.57832 -11.33464 -11.22602 -11.05565 -10.71905 -10.46970 -10.42190 -10.03644 -9.60064 -8.89311 -8.16657 -5.49749 0.45353 1.10843 1.34344 1.58059 1.65427 1.84166 2.34079 2.50478 2.65595 2.75411 3.21946 3.34560 3.45123 3.49999 3.85012 3.88920 3.93287 3.98116 4.01735 4.04660 4.20804 4.23380 4.26136 4.35104 4.41267 4.45510 4.50123 4.56782 4.61258 4.68014 4.73053 4.76697 4.78503 4.83698 4.91317 4.97807 5.00895 5.06334 5.08467 5.16303 5.19956 5.21393 5.27245 5.28471 5.34178 5.43172 5.56380 5.67118 5.82570 5.90114 6.39941 6.45257 6.69466 7.10029 7.38472 7.77254 8.26441 8.98692 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.002899 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.180191 B = 9656.555313 C =11245.490709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.161 3.839 3 H 0.065 0.935 4 N -0.715 5.715 5 C 0.593 3.407 6 O -0.569 6.569 7 C -0.314 4.314 8 C 0.081 3.919 9 N -0.320 5.320 10 N -0.356 5.356 11 C 0.085 3.915 12 C 0.183 3.817 13 C -0.115 4.115 14 C -0.150 4.150 15 C -0.135 4.135 16 C -0.093 4.093 17 H 0.076 0.924 18 C -0.097 4.097 19 C -0.125 4.125 20 C 0.156 3.844 21 N -0.614 5.614 22 C -0.355 4.355 23 H 0.048 0.952 24 C -0.072 4.072 25 N -0.940 5.940 26 Si 1.114 2.886 27 H -0.276 1.276 28 H -0.294 1.294 29 H -0.275 1.275 30 C 0.158 3.842 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.404 0.596 35 H 0.206 0.794 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.101 0.899 41 H 0.129 0.871 42 H 0.104 0.896 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.058 0.942 47 H 0.074 0.926 48 H -0.003 1.003 49 H 0.035 0.965 50 H 0.251 0.749 51 H 0.047 0.953 52 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.499 3.258 22.011 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.056 3.944 3 H 0.083 0.917 4 N -0.365 5.365 5 C 0.382 3.618 6 O -0.449 6.449 7 C -0.329 4.329 8 C -0.106 4.106 9 N -0.140 5.140 10 N -0.134 5.134 11 C -0.055 4.055 12 C 0.049 3.951 13 C -0.135 4.135 14 C -0.186 4.186 15 C -0.173 4.173 16 C -0.113 4.113 17 H 0.094 0.906 18 C -0.135 4.135 19 C -0.164 4.164 20 C 0.031 3.969 21 N -0.338 5.338 22 C -0.485 4.485 23 H 0.066 0.934 24 C -0.269 4.269 25 N -0.581 5.581 26 Si 0.938 3.062 27 H -0.202 1.202 28 H -0.220 1.220 29 H -0.201 1.201 30 C 0.033 3.967 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.240 0.760 35 H 0.223 0.777 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.131 0.869 39 H 0.144 0.856 40 H 0.120 0.880 41 H 0.147 0.853 42 H 0.122 0.878 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.093 0.907 48 H 0.015 0.985 49 H 0.053 0.947 50 H 0.060 0.940 51 H 0.066 0.934 52 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges -12.146 2.406 22.022 25.264 hybrid contribution -0.515 0.953 0.003 1.084 sum -12.661 3.360 22.025 25.626 Atomic orbital electron populations 1.22110 0.93590 1.02699 1.02456 1.20809 0.94845 0.95955 0.82827 0.91728 1.45811 1.67404 1.14274 1.09048 1.17336 0.76431 0.85688 0.82388 1.90709 1.52601 1.16197 1.85438 1.20102 1.22106 0.95513 0.95184 1.24351 0.95532 0.95352 0.95387 1.77153 1.25657 1.05738 1.05449 1.48673 1.48105 1.05631 1.11018 1.22401 1.03848 1.05751 0.73458 1.20843 0.93292 0.91473 0.89491 1.20466 0.98106 0.88888 1.06061 1.23299 1.00779 1.04579 0.89987 1.22698 0.93029 1.02228 0.99298 1.21720 0.95582 0.99957 0.94056 0.90554 1.21444 1.01176 0.98075 0.92822 1.21990 0.95347 1.00566 0.98464 1.20898 0.93180 0.94391 0.88464 1.44314 1.50484 1.38262 1.00777 1.20157 1.09596 1.01325 1.17469 0.93440 1.27346 0.94846 1.06317 0.98389 1.70886 1.43705 0.98342 1.45147 0.82895 0.75570 0.71450 0.76313 1.20182 1.21971 1.20118 1.20957 0.93125 0.94360 0.88297 0.93123 0.90130 0.91542 0.76049 0.77734 0.88455 0.88341 0.86863 0.85571 0.88016 0.85324 0.87801 0.90477 0.89037 0.93038 0.92357 0.90723 0.98483 0.94665 0.93978 0.93418 0.98876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.14 71.98 0.66 -2.78 16 2 C 0.16 4.53 2.16 44.99 0.10 4.63 16 3 H 0.06 2.12 7.58 -2.39 -0.02 2.10 16 4 N -0.71 -19.64 4.47 -445.80 -1.99 -21.63 16 5 C 0.59 17.75 7.78 86.67 0.67 18.42 16 6 O -0.57 -19.34 14.13 -4.02 -0.06 -19.40 16 7 C -0.31 -8.49 6.13 -20.15 -0.12 -8.62 16 8 C 0.08 2.01 11.50 85.65 0.99 2.99 16 9 N -0.32 -8.16 12.50 -56.27 -0.70 -8.87 16 10 N -0.36 -7.43 3.98 -354.31 -1.41 -8.84 16 11 C 0.08 0.90 10.34 127.77 1.32 2.22 16 12 C 0.18 4.28 6.44 42.14 0.27 4.55 16 13 C -0.12 -2.17 4.82 -11.54 -0.06 -2.23 16 14 C -0.15 -1.70 9.13 30.59 0.28 -1.42 16 15 C -0.13 -2.48 8.70 30.59 0.27 -2.21 16 16 C -0.09 -2.96 1.97 -10.71 -0.02 -2.98 16 17 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 18 C -0.10 -2.94 4.86 30.62 0.15 -2.79 16 19 C -0.12 -4.43 6.10 30.82 0.19 -4.24 16 20 C 0.16 7.46 4.85 86.51 0.42 7.88 16 21 N -0.61 -31.18 2.72 -698.25 -1.90 -33.08 16 22 C -0.36 -20.06 9.40 84.04 0.79 -19.27 16 23 H 0.05 2.66 7.93 -2.91 -0.02 2.64 16 24 C -0.07 -4.15 4.69 84.86 0.40 -3.75 16 25 N -0.94 -58.66 12.69 21.65 0.27 -58.39 16 26 Si 1.11 51.30 29.98 68.60 2.06 53.36 16 27 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 29 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 30 C 0.16 6.72 5.55 86.36 0.48 7.20 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.62 6.41 -2.39 -0.02 1.61 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.40 9.97 7.37 -92.71 -0.68 9.29 16 35 H 0.21 4.07 7.50 -2.91 -0.02 4.05 16 36 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.11 0.73 7.23 -2.39 -0.02 0.71 16 39 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.10 0.99 7.73 -2.38 -0.02 0.97 16 41 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.09 2.16 6.37 -2.39 -0.02 2.14 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 48 H 0.00 -0.14 7.89 -2.39 -0.02 -0.16 16 49 H 0.03 1.89 6.86 -2.39 -0.02 1.87 16 50 H 0.25 16.13 7.05 -92.71 -0.65 15.48 16 51 H 0.05 2.04 7.44 -2.38 -0.02 2.02 16 52 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 Total: -1.00 -76.42 408.54 3.40 -73.03 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.35 Total: 26.22 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 6.78 Total: -2.40 kcal Atomic # 7 Polarization: -125.07 SS G_CDS: -5.73 Total: -130.80 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.06 Total: -19.40 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.06 Total: 53.36 kcal Total: -76.42 3.40 -73.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025636798.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.801 kcal (2) G-P(sol) polarization free energy of solvation -76.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds