Wall clock time and date at job start Wed Apr 1 2020 04:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47296 * 2 1 4 4 C 1.50705 * 109.47120 * 120.00368 * 2 1 3 5 5 O 1.21267 * 120.00294 * 91.65421 * 4 2 1 6 6 N 1.34776 * 119.99454 * 271.65180 * 4 2 1 7 7 C 1.46937 * 120.55636 * 5.01866 * 6 4 2 8 8 C 1.52870 * 108.94554 * 234.29434 * 7 6 4 9 9 C 1.52107 * 109.51683 * 306.94811 * 8 7 6 10 10 C 1.54392 * 110.51441 * 295.74203 * 9 8 7 11 11 C 1.54456 * 102.87457 * 276.66697 * 10 9 8 12 12 N 1.47084 * 107.29740 * 338.49784 * 11 10 9 13 13 C 1.36935 * 125.63216 * 179.01121 * 12 11 10 14 14 H 1.07996 * 120.00627 * 180.02562 * 13 12 11 15 15 C 1.38813 * 119.99468 * 0.02562 * 13 12 11 16 16 N 1.31619 * 120.00297 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99959 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46765 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47020 * 119.99734 * 17 15 13 20 20 H 1.48496 * 109.46991 * 240.00018 * 17 15 13 21 21 C 1.47577 * 108.74351 * 359.01053 * 12 11 10 22 22 C 1.52101 * 111.60495 * 59.15410 * 9 8 7 23 23 C 1.46929 * 120.55217 * 185.29255 * 6 4 2 24 24 C 1.50700 * 109.47088 * 239.99724 * 2 1 3 25 25 C 1.35306 * 126.12957 * 275.02714 * 24 2 1 26 26 C 1.39882 * 107.91931 * 179.97438 * 25 24 2 27 27 N 1.30833 * 108.20353 * 0.02562 * 26 25 24 28 28 N 1.34953 * 126.12253 * 94.71132 * 24 2 1 29 29 C 1.46502 * 126.03786 * 0.04368 * 28 24 2 30 30 H 1.09001 * 109.46949 * 181.73405 * 1 2 3 31 31 H 1.09000 * 109.46869 * 301.73155 * 1 2 3 32 32 H 1.08997 * 109.47114 * 61.73288 * 1 2 3 33 33 H 1.08999 * 109.60006 * 354.10678 * 7 6 4 34 34 H 1.08998 * 109.59807 * 114.58149 * 7 6 4 35 35 H 1.08994 * 109.54571 * 186.86313 * 8 7 6 36 36 H 1.08998 * 109.32333 * 66.89062 * 8 7 6 37 37 H 1.08999 * 110.73320 * 35.01368 * 10 9 8 38 38 H 1.09001 * 110.73278 * 158.31904 * 10 9 8 39 39 H 1.08999 * 109.87988 * 97.92208 * 11 10 9 40 40 H 1.08996 * 109.87767 * 219.07516 * 11 10 9 41 41 H 0.97002 * 120.00113 * 180.02562 * 16 15 13 42 42 H 1.08992 * 110.37547 * 264.49104 * 21 12 11 43 43 H 1.09000 * 110.37713 * 142.14634 * 21 12 11 44 44 H 1.09006 * 109.47206 * 180.71737 * 22 9 8 45 45 H 1.08994 * 109.47917 * 60.70107 * 22 9 8 46 46 H 1.09006 * 109.60139 * 245.41436 * 23 6 4 47 47 H 1.08996 * 109.60123 * 5.89114 * 23 6 4 48 48 H 1.08001 * 126.04373 * 359.93694 * 25 24 2 49 49 H 1.08003 * 125.89596 * 179.97438 * 26 25 24 50 50 H 1.08993 * 109.47756 * 89.99641 * 29 28 24 51 51 H 1.09004 * 109.46811 * 209.99907 * 29 28 24 52 52 H 1.09004 * 109.46973 * 329.98867 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.2631 -1.9004 1.1919 6 7 2.2252 -0.0234 2.3737 7 6 1.8468 1.3934 2.4667 8 6 3.0587 2.2014 2.9306 9 6 3.6167 1.5925 4.2079 10 6 2.5874 1.7006 5.3535 11 6 2.8141 3.1327 5.8859 12 7 4.1662 3.5423 5.4769 13 6 4.7450 4.7558 5.7368 14 1 5.7476 4.9610 5.3918 15 6 4.0430 5.7223 6.4439 16 7 2.8209 5.4725 6.8640 17 14 4.8321 7.3781 6.7979 18 1 6.2006 7.4074 6.2220 19 1 4.0143 8.4568 6.1874 20 1 4.9090 7.5859 8.2663 21 6 4.7963 2.4297 4.7401 22 6 4.0349 0.1447 4.0019 23 6 2.8229 -0.6768 3.5461 24 6 2.0323 -0.7105 -1.2304 25 6 2.2080 -2.0453 -1.3651 26 6 2.6864 -2.2883 -2.6569 27 7 2.7947 -1.1405 -3.2753 28 7 2.3819 -0.1298 -2.3974 29 6 2.3412 1.3046 -2.6926 30 1 -0.3633 -1.0272 0.0311 31 1 -0.3633 0.5405 0.8741 32 1 -0.3633 0.4867 -0.9051 33 1 1.5238 1.7505 1.4888 34 1 1.0366 1.5090 3.1866 35 1 2.7590 3.2321 3.1201 36 1 3.8237 2.1821 2.1545 37 1 1.5725 1.5868 4.9724 38 1 2.7944 0.9633 6.1292 39 1 2.0758 3.8093 5.4555 40 1 2.7375 3.1404 6.9731 41 1 2.3302 6.1480 7.3578 42 1 5.4138 1.8321 5.4106 43 1 5.3938 2.8125 3.9127 44 1 4.4166 -0.2602 4.9392 45 1 4.8138 0.0960 3.2410 46 1 2.0899 -0.7247 4.3515 47 1 3.1432 -1.6840 3.2797 48 1 2.0137 -2.7913 -0.6087 49 1 2.9260 -3.2563 -3.0718 50 1 3.2967 1.7574 -2.4282 51 1 2.1513 1.4515 -3.7559 52 1 1.5449 1.7722 -2.1134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035186149.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:49 Heat of formation + Delta-G solvation = 75.153179 kcal Electronic energy + Delta-G solvation = -31906.755811 eV Core-core repulsion = 27908.886579 eV Total energy + Delta-G solvation = -3997.869232 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.59096 -40.40585 -38.72317 -35.85567 -34.61077 -33.19938 -33.00012 -31.18651 -30.63979 -29.19721 -28.76717 -26.94663 -26.84855 -25.06001 -24.01497 -23.37120 -22.50766 -21.33581 -20.58851 -20.11412 -19.29265 -17.97959 -17.46174 -16.76010 -16.40550 -15.87100 -15.77205 -15.20282 -15.08563 -14.65908 -14.57808 -14.11795 -13.93811 -13.84050 -13.74943 -13.59089 -13.29667 -12.99350 -12.79684 -12.68751 -12.57145 -12.43926 -12.31326 -12.20115 -11.94545 -11.73724 -11.58587 -11.12646 -11.08751 -10.97663 -10.78988 -10.67012 -10.62906 -10.23035 -10.05371 -9.85424 -9.73903 -9.65189 -9.60543 -9.37269 -8.65048 -8.61468 -8.50544 -6.84539 -5.74363 -3.07121 1.69331 2.27694 2.51658 2.80097 2.97806 3.36335 3.42623 3.44540 4.12119 4.24765 4.42339 4.46722 4.57529 4.73783 4.88119 4.90894 4.94536 5.02266 5.03143 5.16368 5.16618 5.28130 5.31257 5.34052 5.42589 5.45384 5.53761 5.61642 5.67052 5.73320 5.76031 5.78870 5.92647 5.94289 6.06118 6.11282 6.16547 6.21154 6.26970 6.38536 6.50204 6.57876 6.59135 6.66036 6.78599 6.86766 6.90338 7.34069 7.54093 7.60122 7.60271 7.80163 8.07479 8.23111 9.19952 9.80153 10.46639 11.37213 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.002579 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.528122 B =10852.227458 C =11526.185601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 H 0.103 0.897 4 C 0.528 3.472 5 O -0.532 6.532 6 N -0.602 5.602 7 C 0.102 3.898 8 C -0.112 4.112 9 C -0.071 4.071 10 C -0.137 4.137 11 C 0.180 3.820 12 N -0.604 5.604 13 C -0.225 4.225 14 H 0.077 0.923 15 C -0.009 4.009 16 N -0.922 5.922 17 Si 0.909 3.091 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.146 3.854 22 C -0.116 4.116 23 C 0.116 3.884 24 C 0.084 3.916 25 C -0.238 4.238 26 C 0.037 3.963 27 N -0.298 5.298 28 N -0.374 5.374 29 C 0.097 3.903 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.039 0.961 41 H 0.251 0.749 42 H 0.018 0.982 43 H 0.036 0.964 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.165 0.835 49 H 0.182 0.818 50 H 0.075 0.925 51 H 0.089 0.911 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.648 -11.739 -14.746 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.071 4.071 3 H 0.121 0.879 4 C 0.314 3.686 5 O -0.408 6.408 6 N -0.335 5.335 7 C -0.020 4.020 8 C -0.150 4.150 9 C -0.072 4.072 10 C -0.175 4.175 11 C 0.055 3.945 12 N -0.331 5.331 13 C -0.354 4.354 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.570 5.570 17 Si 0.740 3.260 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.218 1.218 21 C 0.020 3.980 22 C -0.155 4.155 23 C -0.006 4.006 24 C -0.043 4.043 25 C -0.266 4.266 26 C -0.148 4.148 27 N -0.120 5.120 28 N -0.158 5.158 29 C -0.044 4.044 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.036 0.964 43 H 0.054 0.946 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.107 0.893 48 H 0.183 0.817 49 H 0.199 0.801 50 H 0.093 0.907 51 H 0.108 0.892 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.246 -11.423 -15.772 20.168 hybrid contribution 0.289 0.791 1.062 1.355 sum -4.957 -10.632 -14.710 18.815 Atomic orbital electron populations 1.21741 0.90778 1.03907 1.03070 1.19811 0.98222 0.99709 0.89387 0.87946 1.19963 0.77595 0.87254 0.83789 1.90626 1.51619 1.14823 1.83776 1.48090 1.61409 1.11723 1.12294 1.21923 0.98519 0.79681 1.01912 1.21559 0.96479 1.00288 0.96677 1.21015 0.97648 0.93648 0.94886 1.22935 0.97377 1.00543 0.96640 1.21138 0.86943 0.88467 0.97923 1.44519 1.13141 1.11551 1.63867 1.19092 0.98047 0.88818 1.29409 0.90559 1.24776 0.96554 0.98476 1.00677 1.69974 1.10618 1.33649 1.42740 0.86082 0.78262 0.83952 0.77703 1.20571 1.21808 1.21807 1.21475 0.92988 0.89459 0.94094 1.21738 0.97034 0.95153 1.01567 1.21658 0.95256 0.97029 0.86671 1.20334 1.02100 0.93666 0.88179 1.21752 1.11229 0.95352 0.98312 1.23911 0.99889 0.96954 0.94075 1.77330 1.22363 0.95878 1.16429 1.48446 1.51313 1.06839 1.09196 1.21859 1.03258 0.75544 1.03784 0.91036 0.90879 0.91383 0.90193 0.90411 0.89202 0.92273 0.92253 0.92522 0.93755 0.94269 0.93883 0.96430 0.94594 0.90579 0.91978 0.91194 0.89306 0.81723 0.80137 0.90693 0.89210 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.06 37.16 0.34 -0.73 16 2 C -0.05 -0.47 1.89 -92.92 -0.18 -0.65 16 3 H 0.10 0.85 5.66 -51.93 -0.29 0.55 16 4 C 0.53 6.48 6.75 -10.98 -0.07 6.41 16 5 O -0.53 -7.95 13.04 5.57 0.07 -7.87 16 6 N -0.60 -7.04 2.97 -172.86 -0.51 -7.55 16 7 C 0.10 1.10 5.78 -3.87 -0.02 1.08 16 8 C -0.11 -1.54 4.84 -27.25 -0.13 -1.67 16 9 C -0.07 -1.08 0.55 -154.10 -0.08 -1.17 16 10 C -0.14 -2.28 4.92 -25.24 -0.12 -2.40 16 11 C 0.18 4.07 5.00 -2.96 -0.01 4.06 16 12 N -0.60 -14.57 3.39 -170.31 -0.58 -15.14 16 13 C -0.23 -6.06 10.28 -15.06 -0.15 -6.22 16 14 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 15 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 16 N -0.92 -26.21 10.31 55.49 0.57 -25.64 16 17 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 C 0.15 2.83 6.15 -2.86 -0.02 2.82 16 22 C -0.12 -1.51 4.84 -27.01 -0.13 -1.64 16 23 C 0.12 1.40 6.15 -3.63 -0.02 1.37 16 24 C 0.08 0.99 5.85 -82.26 -0.48 0.51 16 25 C -0.24 -3.01 9.44 -40.01 -0.38 -3.39 16 26 C 0.04 0.44 12.03 -17.36 -0.21 0.23 16 27 N -0.30 -3.90 12.58 30.63 0.39 -3.51 16 28 N -0.37 -4.28 4.01 -63.88 -0.26 -4.54 16 29 C 0.10 0.72 11.07 59.85 0.66 1.38 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.50 7.75 -51.93 -0.40 0.09 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.68 5.17 -51.93 -0.27 0.41 16 34 H 0.08 0.84 6.56 -51.93 -0.34 0.50 16 35 H 0.09 1.46 7.82 -51.93 -0.41 1.05 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.88 6.19 -51.93 -0.32 0.56 16 38 H 0.06 0.91 7.98 -51.93 -0.41 0.50 16 39 H 0.04 1.10 7.39 -51.93 -0.38 0.72 16 40 H 0.04 1.01 7.50 -51.93 -0.39 0.62 16 41 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.02 0.35 7.99 -51.93 -0.41 -0.06 16 43 H 0.04 0.70 8.02 -51.93 -0.42 0.28 16 44 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.81 7.62 -51.93 -0.40 0.41 16 47 H 0.09 1.12 7.03 -51.93 -0.36 0.75 16 48 H 0.17 2.19 6.16 -52.49 -0.32 1.87 16 49 H 0.18 1.55 8.06 -52.48 -0.42 1.12 16 50 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.09 0.44 7.55 -51.93 -0.39 0.05 16 LS Contribution 394.72 15.07 5.95 5.95 Total: -1.00 -32.93 394.72 -8.96 -41.89 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.45 Total: 0.19 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.12 Total: -0.36 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.39 Total: -56.38 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.07 Total: -7.87 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.93 -8.96 -41.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035186149.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.047 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds