Wall clock time and date at job start Wed Apr 1 2020 04:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47296 * 2 1 4 4 C 1.50705 * 109.47120 * 120.00368 * 2 1 3 5 5 O 1.21267 * 120.00294 * 91.65421 * 4 2 1 6 6 N 1.34776 * 119.99454 * 271.65180 * 4 2 1 7 7 C 1.46937 * 120.55636 * 5.01866 * 6 4 2 8 8 C 1.52870 * 108.94554 * 234.29434 * 7 6 4 9 9 C 1.52107 * 109.51683 * 306.94811 * 8 7 6 10 10 C 1.54392 * 110.51441 * 295.74203 * 9 8 7 11 11 C 1.54456 * 102.87457 * 276.66697 * 10 9 8 12 12 N 1.47084 * 107.29740 * 338.49784 * 11 10 9 13 13 C 1.36935 * 125.63216 * 179.01121 * 12 11 10 14 14 H 1.07996 * 120.00627 * 180.02562 * 13 12 11 15 15 C 1.38813 * 119.99468 * 0.02562 * 13 12 11 16 16 N 1.31619 * 120.00297 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99959 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46765 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47020 * 119.99734 * 17 15 13 20 20 H 1.48496 * 109.46991 * 240.00018 * 17 15 13 21 21 C 1.47577 * 108.74351 * 359.01053 * 12 11 10 22 22 C 1.52101 * 111.60495 * 59.15410 * 9 8 7 23 23 C 1.46929 * 120.55217 * 185.29255 * 6 4 2 24 24 C 1.50700 * 109.47088 * 239.99724 * 2 1 3 25 25 C 1.35306 * 126.12957 * 275.02714 * 24 2 1 26 26 C 1.39882 * 107.91931 * 179.97438 * 25 24 2 27 27 N 1.30833 * 108.20353 * 0.02562 * 26 25 24 28 28 N 1.34953 * 126.12253 * 94.71132 * 24 2 1 29 29 C 1.46502 * 126.03786 * 0.04368 * 28 24 2 30 30 H 1.09001 * 109.46949 * 181.73405 * 1 2 3 31 31 H 1.09000 * 109.46869 * 301.73155 * 1 2 3 32 32 H 1.08997 * 109.47114 * 61.73288 * 1 2 3 33 33 H 1.08999 * 109.60006 * 354.10678 * 7 6 4 34 34 H 1.08998 * 109.59807 * 114.58149 * 7 6 4 35 35 H 1.08994 * 109.54571 * 186.86313 * 8 7 6 36 36 H 1.08998 * 109.32333 * 66.89062 * 8 7 6 37 37 H 1.08999 * 110.73320 * 35.01368 * 10 9 8 38 38 H 1.09001 * 110.73278 * 158.31904 * 10 9 8 39 39 H 1.08999 * 109.87988 * 97.92208 * 11 10 9 40 40 H 1.08996 * 109.87767 * 219.07516 * 11 10 9 41 41 H 0.97002 * 120.00113 * 180.02562 * 16 15 13 42 42 H 1.08992 * 110.37547 * 264.49104 * 21 12 11 43 43 H 1.09000 * 110.37713 * 142.14634 * 21 12 11 44 44 H 1.09006 * 109.47206 * 180.71737 * 22 9 8 45 45 H 1.08994 * 109.47917 * 60.70107 * 22 9 8 46 46 H 1.09006 * 109.60139 * 245.41436 * 23 6 4 47 47 H 1.08996 * 109.60123 * 5.89114 * 23 6 4 48 48 H 1.08001 * 126.04373 * 359.93694 * 25 24 2 49 49 H 1.08003 * 125.89596 * 179.97438 * 26 25 24 50 50 H 1.08993 * 109.47756 * 89.99641 * 29 28 24 51 51 H 1.09004 * 109.46811 * 209.99907 * 29 28 24 52 52 H 1.09004 * 109.46973 * 329.98867 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.2631 -1.9004 1.1919 6 7 2.2252 -0.0234 2.3737 7 6 1.8468 1.3934 2.4667 8 6 3.0587 2.2014 2.9306 9 6 3.6167 1.5925 4.2079 10 6 2.5874 1.7006 5.3535 11 6 2.8141 3.1327 5.8859 12 7 4.1662 3.5423 5.4769 13 6 4.7450 4.7558 5.7368 14 1 5.7476 4.9610 5.3918 15 6 4.0430 5.7223 6.4439 16 7 2.8209 5.4725 6.8640 17 14 4.8321 7.3781 6.7979 18 1 6.2006 7.4074 6.2220 19 1 4.0143 8.4568 6.1874 20 1 4.9090 7.5859 8.2663 21 6 4.7963 2.4297 4.7401 22 6 4.0349 0.1447 4.0019 23 6 2.8229 -0.6768 3.5461 24 6 2.0323 -0.7105 -1.2304 25 6 2.2080 -2.0453 -1.3651 26 6 2.6864 -2.2883 -2.6569 27 7 2.7947 -1.1405 -3.2753 28 7 2.3819 -0.1298 -2.3974 29 6 2.3412 1.3046 -2.6926 30 1 -0.3633 -1.0272 0.0311 31 1 -0.3633 0.5405 0.8741 32 1 -0.3633 0.4867 -0.9051 33 1 1.5238 1.7505 1.4888 34 1 1.0366 1.5090 3.1866 35 1 2.7590 3.2321 3.1201 36 1 3.8237 2.1821 2.1545 37 1 1.5725 1.5868 4.9724 38 1 2.7944 0.9633 6.1292 39 1 2.0758 3.8093 5.4555 40 1 2.7375 3.1404 6.9731 41 1 2.3302 6.1480 7.3578 42 1 5.4138 1.8321 5.4106 43 1 5.3938 2.8125 3.9127 44 1 4.4166 -0.2602 4.9392 45 1 4.8138 0.0960 3.2410 46 1 2.0899 -0.7247 4.3515 47 1 3.1432 -1.6840 3.2797 48 1 2.0137 -2.7913 -0.6087 49 1 2.9260 -3.2563 -3.0718 50 1 3.2967 1.7574 -2.4282 51 1 2.1513 1.4515 -3.7559 52 1 1.5449 1.7722 -2.1134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035186149.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:48 Heat of formation + Delta-G solvation = 55.580823 kcal Electronic energy + Delta-G solvation = -31907.604532 eV Core-core repulsion = 27908.886579 eV Total energy + Delta-G solvation = -3998.717953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.45107 -41.45508 -39.94494 -37.19829 -35.46744 -34.66847 -33.87875 -32.49389 -31.99523 -30.41913 -30.01733 -28.32578 -27.55457 -26.28365 -25.40244 -24.40388 -23.66020 -22.22476 -21.92242 -21.48215 -20.23148 -19.29047 -18.56521 -18.16163 -17.39627 -16.82579 -16.76211 -16.59772 -16.32129 -16.01937 -15.65662 -15.38323 -14.97913 -14.92211 -14.77129 -14.55534 -14.24338 -14.18306 -13.89712 -13.83123 -13.58768 -13.39593 -13.22403 -13.17260 -13.08504 -12.96848 -12.93552 -12.76018 -12.38024 -12.24905 -12.10295 -12.06193 -11.92005 -11.76506 -11.59573 -11.44302 -11.19675 -11.03234 -10.67312 -10.61337 -10.21213 -9.60630 -9.39959 -8.83003 -7.81985 -5.15732 0.84203 1.46332 1.47328 1.47491 1.56930 1.65497 1.91087 2.09659 2.51051 3.31133 3.36180 3.46519 3.64026 3.73220 3.75944 3.77425 3.97448 3.98575 4.08207 4.17576 4.29597 4.36628 4.38282 4.41427 4.51447 4.64526 4.66440 4.67433 4.69934 4.73909 4.75399 4.84095 4.84493 4.88946 4.90912 4.94157 4.99520 5.10076 5.16014 5.20513 5.22620 5.34370 5.43488 5.46639 5.50072 5.65273 5.76074 5.79335 5.86345 6.08598 6.24406 6.42152 6.74254 7.15380 7.15461 7.82921 8.47353 9.28047 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.002579 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.528122 B =10852.227458 C =11526.185601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.042 4.042 3 H 0.124 0.876 4 C 0.525 3.475 5 O -0.561 6.561 6 N -0.600 5.600 7 C 0.108 3.892 8 C -0.108 4.108 9 C -0.057 4.057 10 C -0.120 4.120 11 C 0.189 3.811 12 N -0.623 5.623 13 C -0.236 4.236 14 H 0.077 0.923 15 C -0.064 4.064 16 N -0.948 5.948 17 Si 0.972 3.028 18 H -0.269 1.269 19 H -0.291 1.291 20 H -0.296 1.296 21 C 0.140 3.860 22 C -0.107 4.107 23 C 0.119 3.881 24 C 0.084 3.916 25 C -0.262 4.262 26 C 0.032 3.968 27 N -0.328 5.328 28 N -0.376 5.376 29 C 0.085 3.915 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.015 0.985 40 H -0.004 1.004 41 H 0.245 0.755 42 H 0.017 0.983 43 H 0.035 0.965 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.153 0.847 49 H 0.203 0.797 50 H 0.081 0.919 51 H 0.097 0.903 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.113 -11.742 -16.072 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.065 4.065 3 H 0.142 0.858 4 C 0.313 3.687 5 O -0.440 6.440 6 N -0.333 5.333 7 C -0.014 4.014 8 C -0.146 4.146 9 C -0.058 4.058 10 C -0.158 4.158 11 C 0.064 3.936 12 N -0.350 5.350 13 C -0.366 4.366 14 H 0.095 0.905 15 C -0.257 4.257 16 N -0.598 5.598 17 Si 0.801 3.199 18 H -0.193 1.193 19 H -0.218 1.218 20 H -0.223 1.223 21 C 0.015 3.985 22 C -0.145 4.145 23 C -0.003 4.003 24 C -0.044 4.044 25 C -0.291 4.291 26 C -0.152 4.152 27 N -0.150 5.150 28 N -0.159 5.159 29 C -0.055 4.055 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.129 0.871 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.033 0.967 40 H 0.015 0.985 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.054 0.946 44 H 0.100 0.900 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.171 0.829 49 H 0.220 0.780 50 H 0.099 0.901 51 H 0.116 0.884 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.692 -11.430 -17.126 21.362 hybrid contribution 0.502 0.791 1.492 1.761 sum -5.189 -10.639 -15.634 19.610 Atomic orbital electron populations 1.21762 0.89038 1.03645 1.04699 1.19878 0.99457 0.99994 0.87179 0.85786 1.20384 0.76989 0.86995 0.84367 1.90629 1.52844 1.16285 1.84238 1.48113 1.61134 1.11909 1.12097 1.21948 0.96976 0.78614 1.03834 1.21475 0.97954 0.99229 0.95934 1.20928 0.95249 0.94609 0.95033 1.22790 0.99293 0.96473 0.97227 1.20893 0.85839 0.91556 0.95282 1.44793 1.13950 1.11903 1.64304 1.19428 0.98193 0.90142 1.28817 0.90532 1.25539 0.97218 1.01762 1.01165 1.70182 1.11767 1.34288 1.43540 0.85105 0.77899 0.79959 0.76955 1.19330 1.21776 1.22292 1.21677 0.94515 0.88732 0.93613 1.21643 0.97583 0.93288 1.02013 1.21603 0.94988 0.96586 0.87162 1.20601 1.01303 0.93637 0.88852 1.21788 1.12824 0.95957 0.98569 1.24305 0.99303 0.97758 0.93861 1.77274 1.23545 0.96606 1.17586 1.48746 1.50479 1.07908 1.08781 1.22225 1.04702 0.73566 1.05003 0.92323 0.89259 0.89724 0.87075 0.89732 0.91764 0.91716 0.89717 0.91616 0.96680 0.98545 0.94532 0.96565 0.94644 0.90015 0.91942 0.90182 0.89694 0.82923 0.78005 0.90059 0.88439 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.06 71.98 0.65 -0.98 16 2 C -0.04 -0.69 1.89 -12.28 -0.02 -0.72 16 3 H 0.12 1.49 5.66 -2.39 -0.01 1.48 16 4 C 0.52 11.59 6.75 87.66 0.59 12.18 16 5 O -0.56 -16.05 13.04 -2.99 -0.04 -16.09 16 6 N -0.60 -12.18 2.97 -819.21 -2.43 -14.61 16 7 C 0.11 1.95 5.78 86.25 0.50 2.45 16 8 C -0.11 -2.72 4.84 30.26 0.15 -2.57 16 9 C -0.06 -1.65 0.55 -51.92 -0.03 -1.68 16 10 C -0.12 -3.83 4.92 31.56 0.16 -3.67 16 11 C 0.19 8.73 5.00 86.76 0.43 9.17 16 12 N -0.62 -30.46 3.39 -692.75 -2.35 -32.80 16 13 C -0.24 -12.91 10.28 84.03 0.86 -12.04 16 14 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 15 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 16 N -0.95 -55.46 10.31 21.65 0.22 -55.23 16 17 Si 0.97 44.92 29.55 68.60 2.03 46.95 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 21 C 0.14 5.35 6.15 86.55 0.53 5.88 16 22 C -0.11 -2.52 4.84 30.41 0.15 -2.37 16 23 C 0.12 2.55 6.15 86.41 0.53 3.08 16 24 C 0.08 1.82 5.85 41.40 0.24 2.06 16 25 C -0.26 -6.49 9.44 21.99 0.21 -6.28 16 26 C 0.03 0.74 12.03 85.24 1.03 1.77 16 27 N -0.33 -8.22 12.58 -57.02 -0.72 -8.94 16 28 N -0.38 -7.85 4.01 -356.03 -1.43 -9.28 16 29 C 0.09 1.01 11.07 127.77 1.41 2.43 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.83 7.75 -2.39 -0.02 0.81 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.11 1.35 5.17 -2.39 -0.01 1.34 16 34 H 0.08 1.49 6.56 -2.39 -0.02 1.47 16 35 H 0.06 2.00 7.82 -2.39 -0.02 1.99 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 2.30 6.19 -2.39 -0.01 2.28 16 38 H 0.07 2.00 7.98 -2.39 -0.02 1.98 16 39 H 0.01 0.77 7.39 -2.39 -0.02 0.75 16 40 H 0.00 -0.20 7.50 -2.39 -0.02 -0.22 16 41 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 42 H 0.02 0.64 7.99 -2.39 -0.02 0.62 16 43 H 0.04 1.35 8.02 -2.39 -0.02 1.33 16 44 H 0.08 1.87 8.09 -2.38 -0.02 1.85 16 45 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.08 1.59 7.62 -2.38 -0.02 1.57 16 47 H 0.08 1.96 7.03 -2.39 -0.02 1.94 16 48 H 0.15 4.10 6.16 -2.91 -0.02 4.09 16 49 H 0.20 3.34 8.06 -2.91 -0.02 3.31 16 50 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 52 H 0.11 0.70 7.55 -2.39 -0.02 0.68 16 Total: -1.00 -74.17 394.72 4.05 -70.12 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.91 Total: 14.28 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 7.85 Total: 5.61 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -6.70 Total: -120.86 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.04 Total: -16.09 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -74.17 4.05 -70.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035186149.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.699 kcal (2) G-P(sol) polarization free energy of solvation -74.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds