Wall clock time and date at job start Wed Apr 1 2020 05:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46897 * 2 1 4 4 C 1.53007 * 109.46820 * 119.99313 * 2 1 3 5 5 C 1.50703 * 109.47140 * 295.00205 * 4 2 1 6 6 O 1.21275 * 120.00111 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99612 * 180.02562 * 5 4 2 8 8 C 1.46928 * 120.55057 * 179.97438 * 7 5 4 9 9 C 1.53342 * 108.68473 * 125.63017 * 8 7 5 10 10 C 1.52110 * 109.44249 * 53.30481 * 9 8 7 11 11 C 1.54385 * 110.50739 * 64.08966 * 10 9 8 12 12 C 1.54457 * 102.87109 * 83.33374 * 11 10 9 13 13 N 1.47083 * 107.29725 * 21.50085 * 12 11 10 14 14 C 1.36935 * 125.62931 * 180.96847 * 13 12 11 15 15 H 1.08003 * 119.99937 * 168.95343 * 14 13 12 16 16 C 1.38811 * 119.99964 * 348.94815 * 14 13 12 17 17 N 1.31619 * 119.99929 * 165.65470 * 16 14 13 18 18 Si 1.86799 * 120.00069 * 345.65523 * 16 14 13 19 19 H 1.48500 * 109.47088 * 185.28736 * 18 16 14 20 20 H 1.48495 * 109.46844 * 305.28614 * 18 16 14 21 21 H 1.48497 * 109.46908 * 65.28631 * 18 16 14 22 22 C 1.47575 * 108.74515 * 1.23423 * 13 12 11 23 23 C 1.52103 * 111.59976 * 300.69054 * 10 9 8 24 24 C 1.46928 * 120.55101 * 359.97438 * 7 5 4 25 25 N 1.46498 * 109.47336 * 239.99741 * 2 1 3 26 26 C 1.36879 * 126.39670 * 119.71681 * 25 2 1 27 27 C 1.34670 * 106.81511 * 179.84419 * 26 25 2 28 28 N 1.34123 * 108.02155 * 0.41594 * 27 26 25 29 29 C 1.30505 * 109.25648 * 359.73551 * 28 27 26 30 30 H 1.09000 * 109.47352 * 60.00375 * 1 2 3 31 31 H 1.09003 * 109.47132 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47739 * 300.00512 * 1 2 3 33 33 H 1.09003 * 109.46477 * 175.00233 * 4 2 1 34 34 H 1.08995 * 109.46755 * 55.00485 * 4 2 1 35 35 H 1.08999 * 109.60337 * 5.87416 * 8 7 5 36 36 H 1.09002 * 109.60479 * 245.38772 * 8 7 5 37 37 H 1.08999 * 109.47461 * 293.31423 * 9 8 7 38 38 H 1.08999 * 109.48299 * 173.29949 * 9 8 7 39 39 H 1.08995 * 110.73888 * 324.98680 * 11 10 9 40 40 H 1.09004 * 110.73381 * 201.67143 * 11 10 9 41 41 H 1.09003 * 109.87682 * 262.08138 * 12 11 10 42 42 H 1.09002 * 109.88538 * 140.92812 * 12 11 10 43 43 H 0.97002 * 120.00420 * 354.93210 * 17 16 14 44 44 H 1.09003 * 110.37719 * 95.25320 * 22 13 12 45 45 H 1.08995 * 110.38134 * 217.60924 * 22 13 12 46 46 H 1.08994 * 109.47603 * 179.28981 * 23 10 9 47 47 H 1.09001 * 109.48068 * 299.31611 * 23 10 9 48 48 H 1.08992 * 109.60702 * 354.12479 * 24 7 5 49 49 H 1.08995 * 109.60156 * 114.60997 * 24 7 5 50 50 H 1.07998 * 126.59103 * 359.97438 * 26 25 2 51 51 H 1.07998 * 125.99077 * 180.12085 * 27 26 25 52 52 H 1.08004 * 125.65110 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6412 0.0573 2.4767 6 8 1.0108 1.0871 2.3633 7 7 1.9851 -0.3911 3.7002 8 6 1.6032 0.3584 4.9049 9 6 0.8473 -0.5831 5.8502 10 6 1.6829 -1.8296 6.0982 11 6 2.9916 -1.4663 6.8322 12 6 2.5528 -1.4133 8.3121 13 7 1.3180 -2.2036 8.4307 14 6 0.5979 -2.3907 9.5803 15 1 -0.3852 -2.8354 9.5353 16 6 1.1317 -2.0088 10.8035 17 7 0.3544 -1.9210 11.8620 18 14 2.9530 -1.6195 10.9472 19 1 3.2940 -1.3648 12.3699 20 1 3.7461 -2.7707 10.4465 21 1 3.2666 -0.4136 10.1394 22 6 0.9868 -2.7671 7.1076 23 6 1.9855 -2.5677 4.8031 24 6 2.7483 -1.6375 3.8516 25 7 2.0184 -0.6906 -1.1961 26 6 2.8040 -0.1538 -2.1800 27 6 3.0190 -1.1298 -3.0828 28 7 2.3743 -2.2297 -2.6662 29 6 1.7727 -1.9741 -1.5367 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.1263 -0.7993 1.2057 34 1 1.6053 -1.7196 1.2953 35 1 0.9590 1.1927 4.6276 36 1 2.4982 0.7337 5.4012 37 1 -0.1028 -0.8666 5.3974 38 1 0.6617 -0.0757 6.7968 39 1 3.3611 -0.4947 6.5043 40 1 3.7461 -2.2383 6.6809 41 1 2.3616 -0.3810 8.6053 42 1 3.3297 -1.8425 8.9448 43 1 -0.6027 -2.0511 11.7732 44 1 1.3765 -3.7812 7.0185 45 1 -0.0918 -2.7590 6.9508 46 1 2.5946 -3.4455 5.0189 47 1 1.0514 -2.8794 4.3356 48 1 2.8588 -2.1189 2.8801 49 1 3.7315 -1.4161 4.2667 50 1 3.1810 0.8573 -2.2229 51 1 3.6036 -1.0408 -3.9865 52 1 1.1767 -2.6731 -0.9687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035232063.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:12 Heat of formation + Delta-G solvation = 42.417514 kcal Electronic energy + Delta-G solvation = -31361.918700 eV Core-core repulsion = 27362.629944 eV Total energy + Delta-G solvation = -3999.288756 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.00692 -41.69496 -40.24512 -37.55132 -36.53587 -34.97065 -33.14033 -32.54840 -31.67185 -30.65718 -30.13004 -29.34858 -28.23846 -25.45438 -24.87830 -24.13642 -23.83096 -22.35972 -22.21785 -21.45247 -20.57850 -19.79962 -18.95261 -18.52264 -17.49008 -17.07592 -17.00820 -16.80332 -16.53451 -16.02178 -15.68859 -15.52402 -15.18861 -15.04313 -14.92727 -14.70725 -14.66729 -14.46172 -14.21521 -14.16631 -13.91571 -13.79624 -13.58136 -13.19935 -13.05228 -12.89624 -12.82623 -12.58416 -12.49017 -12.28363 -12.14139 -11.90017 -11.65447 -11.57640 -11.43542 -11.30449 -10.96808 -10.90447 -10.79698 -10.62256 -10.56962 -9.62697 -9.40479 -9.06000 -8.65494 -5.46966 1.18009 1.38806 1.48824 1.55220 1.66618 1.71430 2.15285 2.28004 2.54793 3.12014 3.32512 3.41801 3.48051 3.54493 3.71830 3.75306 3.83094 3.91475 4.05135 4.06023 4.09545 4.19636 4.25804 4.31294 4.43722 4.45973 4.49476 4.59656 4.62989 4.64485 4.69772 4.74202 4.75610 4.78612 4.81619 4.89248 4.89657 4.91410 5.04831 5.08693 5.10319 5.20046 5.24666 5.38781 5.41810 5.42829 5.53200 5.61085 5.87104 6.10470 6.31169 6.40470 6.83123 7.11378 7.19728 7.46395 8.10858 8.87230 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.002176 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.852444 B =12864.517900 C =13028.611033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.155 3.845 3 H 0.105 0.895 4 C -0.142 4.142 5 C 0.520 3.480 6 O -0.576 6.576 7 N -0.603 5.603 8 C 0.121 3.879 9 C -0.105 4.105 10 C -0.058 4.058 11 C -0.110 4.110 12 C 0.100 3.900 13 N -0.632 5.632 14 C -0.306 4.306 15 H 0.041 0.959 16 C -0.085 4.085 17 N -0.968 5.968 18 Si 1.114 2.886 19 H -0.317 1.317 20 H -0.283 1.283 21 H -0.251 1.251 22 C 0.139 3.861 23 C -0.112 4.112 24 C 0.107 3.893 25 N -0.450 5.450 26 C -0.053 4.053 27 C -0.056 4.056 28 N -0.537 5.537 29 C 0.179 3.821 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.028 0.972 42 H 0.021 0.979 43 H 0.245 0.755 44 H 0.032 0.968 45 H 0.025 0.975 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.117 0.883 49 H 0.089 0.911 50 H 0.195 0.805 51 H 0.178 0.822 52 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.036 3.240 -29.397 30.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.052 3.948 3 H 0.123 0.877 4 C -0.182 4.182 5 C 0.309 3.691 6 O -0.457 6.457 7 N -0.335 5.335 8 C -0.002 4.002 9 C -0.144 4.144 10 C -0.059 4.059 11 C -0.147 4.147 12 C -0.024 4.024 13 N -0.360 5.360 14 C -0.435 4.435 15 H 0.059 0.941 16 C -0.277 4.277 17 N -0.612 5.612 18 Si 0.942 3.058 19 H -0.246 1.246 20 H -0.211 1.211 21 H -0.176 1.176 22 C 0.015 3.985 23 C -0.151 4.151 24 C -0.015 4.015 25 N -0.133 5.133 26 C -0.186 4.186 27 C -0.203 4.203 28 N -0.256 5.256 29 C -0.104 4.104 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.046 0.954 42 H 0.038 0.962 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.044 0.956 46 H 0.114 0.886 47 H 0.090 0.910 48 H 0.135 0.865 49 H 0.107 0.893 50 H 0.212 0.788 51 H 0.196 0.804 52 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 9.764 3.487 -28.635 30.454 hybrid contribution -2.176 0.139 0.381 2.214 sum 7.588 3.626 -28.254 29.479 Atomic orbital electron populations 1.22225 0.92759 1.03485 1.03592 1.21084 0.95825 0.96730 0.81170 0.87706 1.22013 1.04994 1.01169 0.90072 1.20660 0.78403 0.85158 0.84886 1.90690 1.41877 1.26494 1.86618 1.48170 1.54867 1.25262 1.05231 1.21525 0.99852 0.94185 0.84643 1.21518 0.98231 0.95919 0.98712 1.21024 0.95030 0.94946 0.94895 1.22682 0.97067 1.03534 0.91451 1.22147 0.87803 0.94168 0.98318 1.44944 1.27622 1.57825 1.05612 1.20037 0.98165 1.39053 0.86243 0.94133 1.27187 1.10097 0.99578 0.90868 1.70998 1.04926 1.53720 1.31585 0.83328 0.71223 0.77958 0.73278 1.24627 1.21081 1.17633 1.21784 0.97142 0.95413 0.84207 1.21730 1.01827 0.98402 0.93107 1.22081 0.94805 0.82839 1.01785 1.45807 1.37889 1.11199 1.18410 1.23166 1.01772 1.01952 0.91688 1.22636 1.05429 0.89751 1.02505 1.70286 1.13757 1.29580 1.11953 1.25354 1.03463 0.86041 0.95519 0.92306 0.90990 0.90129 0.86187 0.85666 0.90302 0.90158 0.92551 0.92968 0.88672 0.88880 0.95420 0.96215 0.94572 0.95005 0.95637 0.88590 0.91029 0.86502 0.89261 0.78767 0.80449 0.75956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 8.98 71.98 0.65 -1.36 16 2 C 0.15 1.63 2.70 44.99 0.12 1.75 16 3 H 0.10 1.24 7.90 -2.39 -0.02 1.22 16 4 C -0.14 -1.16 3.52 29.85 0.10 -1.05 16 5 C 0.52 8.09 7.41 87.66 0.65 8.74 16 6 O -0.58 -13.30 13.37 -3.02 -0.04 -13.34 16 7 N -0.60 -9.18 2.96 -818.25 -2.42 -11.60 16 8 C 0.12 2.47 6.12 86.41 0.53 3.00 16 9 C -0.11 -2.73 4.87 30.42 0.15 -2.58 16 10 C -0.06 -1.42 0.55 -51.84 -0.03 -1.45 16 11 C -0.11 -2.76 4.91 31.56 0.16 -2.61 16 12 C 0.10 3.89 4.24 86.76 0.37 4.26 16 13 N -0.63 -29.49 3.31 -692.29 -2.29 -31.78 16 14 C -0.31 -17.80 10.56 84.03 0.89 -16.91 16 15 H 0.04 2.58 8.06 -2.91 -0.02 2.55 16 16 C -0.09 -5.13 5.50 84.86 0.47 -4.67 16 17 N -0.97 -63.22 13.70 21.65 0.30 -62.92 16 18 Si 1.11 53.84 24.53 68.60 1.68 55.52 16 19 H -0.32 -15.92 7.11 99.48 0.71 -15.21 16 20 H -0.28 -12.78 6.84 99.48 0.68 -12.10 16 21 H -0.25 -10.59 5.43 99.48 0.54 -10.05 16 22 C 0.14 5.01 6.16 86.63 0.53 5.54 16 23 C -0.11 -1.68 4.84 30.43 0.15 -1.53 16 24 C 0.11 1.04 6.07 86.43 0.53 1.57 16 25 N -0.45 -5.39 2.62 -506.54 -1.33 -6.71 16 26 C -0.05 -0.66 11.54 83.09 0.96 0.30 16 27 C -0.06 -0.92 11.87 83.52 0.99 0.08 16 28 N -0.54 -10.65 11.25 -200.31 -2.25 -12.90 16 29 C 0.18 2.49 11.65 180.26 2.10 4.59 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.71 7.95 -2.39 -0.02 0.69 16 32 H 0.08 1.36 5.95 -2.39 -0.01 1.34 16 33 H 0.12 0.64 7.93 -2.39 -0.02 0.62 16 34 H 0.13 0.53 7.64 -2.39 -0.02 0.52 16 35 H 0.08 1.86 6.99 -2.39 -0.02 1.84 16 36 H 0.08 1.52 6.55 -2.39 -0.02 1.50 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.05 1.71 7.82 -2.39 -0.02 1.69 16 39 H 0.09 1.94 6.17 -2.39 -0.01 1.93 16 40 H 0.09 1.93 7.98 -2.38 -0.02 1.91 16 41 H 0.03 1.16 6.79 -2.39 -0.02 1.15 16 42 H 0.02 0.83 3.81 -2.39 -0.01 0.82 16 43 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16 44 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 45 H 0.03 0.98 8.03 -2.39 -0.02 0.96 16 46 H 0.10 1.22 8.09 -2.39 -0.02 1.20 16 47 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.12 0.43 5.91 -2.39 -0.01 0.42 16 49 H 0.09 0.73 7.62 -2.39 -0.02 0.71 16 50 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 51 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 52 H 0.22 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -81.08 389.12 3.63 -77.46 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 0.68 Total: 8.61 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 9.30 Total: -2.33 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -8.00 Total: -125.92 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.04 Total: -13.34 kcal Atomic # 14 Polarization: 53.84 SS G_CDS: 1.68 Total: 55.52 kcal Total: -81.08 3.63 -77.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035232063.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.875 kcal (2) G-P(sol) polarization free energy of solvation -81.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds