Wall clock time and date at job start Wed Apr 1 2020 05:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46775 * 2 1 4 4 C 1.53007 * 109.47178 * 240.00713 * 2 1 3 5 5 C 1.50703 * 109.47140 * 64.99663 * 4 2 1 6 6 O 1.21275 * 120.00111 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99612 * 180.02562 * 5 4 2 8 8 C 1.46928 * 120.55057 * 179.97438 * 7 5 4 9 9 C 1.53342 * 108.68473 * 125.63017 * 8 7 5 10 10 C 1.52110 * 109.44249 * 53.30481 * 9 8 7 11 11 C 1.54385 * 110.50739 * 64.08966 * 10 9 8 12 12 C 1.54457 * 102.87109 * 83.33374 * 11 10 9 13 13 N 1.47083 * 107.29725 * 21.50085 * 12 11 10 14 14 C 1.36935 * 125.62931 * 180.96847 * 13 12 11 15 15 H 1.08003 * 119.99937 * 168.95343 * 14 13 12 16 16 C 1.38811 * 119.99964 * 348.94815 * 14 13 12 17 17 N 1.31619 * 119.99929 * 165.65470 * 16 14 13 18 18 Si 1.86799 * 120.00069 * 345.65523 * 16 14 13 19 19 H 1.48500 * 109.47088 * 185.28736 * 18 16 14 20 20 H 1.48495 * 109.46844 * 305.28614 * 18 16 14 21 21 H 1.48497 * 109.46908 * 65.28631 * 18 16 14 22 22 C 1.47575 * 108.74515 * 1.23423 * 13 12 11 23 23 C 1.52103 * 111.59976 * 300.69054 * 10 9 8 24 24 C 1.46928 * 120.55101 * 359.97438 * 7 5 4 25 25 N 1.46492 * 109.47312 * 120.00053 * 2 1 3 26 26 C 1.36875 * 126.40490 * 240.00007 * 25 2 1 27 27 C 1.34660 * 106.82428 * 180.02562 * 26 25 2 28 28 N 1.34136 * 108.02098 * 0.02562 * 27 26 25 29 29 C 1.30503 * 109.25122 * 359.72277 * 28 27 26 30 30 H 1.09002 * 109.46890 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47061 * 299.99919 * 1 2 3 32 32 H 1.09004 * 109.46785 * 59.99762 * 1 2 3 33 33 H 1.09003 * 109.46477 * 304.99690 * 4 2 1 34 34 H 1.08995 * 109.46755 * 184.99943 * 4 2 1 35 35 H 1.08999 * 109.60337 * 5.87416 * 8 7 5 36 36 H 1.09002 * 109.60479 * 245.38772 * 8 7 5 37 37 H 1.08999 * 109.47461 * 293.31423 * 9 8 7 38 38 H 1.08999 * 109.48299 * 173.29949 * 9 8 7 39 39 H 1.08995 * 110.73888 * 324.98680 * 11 10 9 40 40 H 1.09004 * 110.73381 * 201.67143 * 11 10 9 41 41 H 1.09003 * 109.87682 * 262.08138 * 12 11 10 42 42 H 1.09002 * 109.88538 * 140.92812 * 12 11 10 43 43 H 0.97002 * 120.00420 * 354.93210 * 17 16 14 44 44 H 1.09003 * 110.37719 * 95.25320 * 22 13 12 45 45 H 1.08995 * 110.38134 * 217.60924 * 22 13 12 46 46 H 1.08994 * 109.47603 * 179.28981 * 23 10 9 47 47 H 1.09001 * 109.48068 * 299.31611 * 23 10 9 48 48 H 1.08992 * 109.60702 * 354.12479 * 24 7 5 49 49 H 1.08995 * 109.60156 * 114.60997 * 24 7 5 50 50 H 1.08007 * 126.58677 * 0.03911 * 26 25 2 51 51 H 1.08006 * 125.99356 * 180.02562 * 27 26 25 52 52 H 1.08001 * 125.64831 * 180.28739 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6413 0.0573 -2.4767 6 8 1.0117 1.0876 -2.3632 7 7 1.9845 -0.3916 -3.7003 8 6 1.6016 0.3573 -4.9050 9 6 2.8627 0.6364 -5.7314 10 6 3.6010 -0.6691 -5.9852 11 6 2.7408 -1.6183 -6.8469 12 6 3.0233 -1.1288 -8.2844 13 7 4.3001 -0.3993 -8.2550 14 6 4.8957 0.2098 -9.3271 15 1 5.7373 0.8693 -9.1746 16 6 4.4179 -0.0205 -10.6098 17 7 4.7890 0.7623 -11.6007 18 14 3.2480 -1.4412 -10.9298 19 1 2.9884 -1.5500 -12.3878 20 1 3.8572 -2.7038 -10.4399 21 1 1.9686 -1.1993 -10.2158 22 6 4.8366 -0.4376 -6.8808 23 6 4.0026 -1.3473 -4.6842 24 6 2.7476 -1.6380 -3.8516 25 7 2.0184 -0.6906 1.1961 26 6 2.8085 -0.1555 2.1773 27 6 3.0191 -1.1298 3.0827 28 7 2.3756 -2.2303 2.6653 29 6 1.7694 -1.9729 1.5387 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6054 -1.7197 -1.2953 34 1 3.1263 -0.7993 -1.2057 35 1 1.1370 1.3003 -4.6171 36 1 0.9008 -0.2331 -5.4954 37 1 3.5116 1.3205 -5.1845 38 1 2.5813 1.0857 -6.6838 39 1 1.6840 -1.5097 -6.6030 40 1 3.0628 -2.6520 -6.7211 41 1 2.2243 -0.4643 -8.6133 42 1 3.0994 -1.9821 -8.9584 43 1 5.3368 1.5429 -11.4232 44 1 5.5457 -1.2584 -6.7729 45 1 5.3123 0.5111 -6.6324 46 1 4.5164 -2.2826 -4.9056 47 1 4.6676 -0.6912 -4.1225 48 1 3.0386 -2.0102 -2.8694 49 1 2.1353 -2.3822 -4.3607 50 1 3.1895 0.8543 2.2178 51 1 3.6038 -1.0409 3.9865 52 1 1.1698 -2.6706 0.9729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035232065.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:20 Heat of formation + Delta-G solvation = 63.741482 kcal Electronic energy + Delta-G solvation = -31333.945104 eV Core-core repulsion = 27335.581024 eV Total energy + Delta-G solvation = -3998.364080 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.43244 -40.81878 -39.18923 -36.46681 -35.83263 -33.33617 -31.86333 -31.40417 -30.96656 -29.55607 -29.14221 -28.59537 -27.07082 -24.16272 -23.87597 -23.09190 -22.95577 -21.66661 -20.91793 -20.49671 -19.76459 -18.39484 -18.04272 -17.25002 -16.68954 -16.32212 -16.07537 -15.51825 -15.45996 -15.23839 -14.92526 -14.29357 -14.22417 -14.05052 -13.90272 -13.79989 -13.65112 -13.46780 -13.34290 -13.15787 -13.07132 -12.70515 -12.37869 -12.23390 -12.00192 -11.90995 -11.72144 -11.52135 -11.36989 -11.25458 -11.01953 -10.55450 -10.45993 -10.32597 -10.27479 -10.11352 -9.97559 -9.91084 -9.35032 -8.99184 -8.83539 -8.82799 -8.71894 -7.05641 -6.33467 -3.25102 1.73740 2.24315 2.25721 2.81349 2.89396 3.37714 3.45906 3.68315 3.92992 4.08694 4.23518 4.39419 4.51198 4.55702 4.59096 4.62736 4.63557 4.80327 4.87678 4.91230 4.96564 5.04241 5.12003 5.13675 5.18457 5.26168 5.30571 5.35822 5.42476 5.45116 5.53818 5.58050 5.65848 5.71834 5.73985 5.81979 5.86792 5.94911 5.97985 6.12944 6.22413 6.25065 6.34623 6.42460 6.43094 6.56912 6.69112 6.71984 6.85414 7.10186 7.64495 7.77524 7.81257 8.30905 9.01609 9.53243 10.20463 11.17110 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.002178 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.791836 B =12855.500283 C =13046.366630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.109 0.891 4 C -0.152 4.152 5 C 0.521 3.479 6 O -0.542 6.542 7 N -0.603 5.603 8 C 0.111 3.889 9 C -0.111 4.111 10 C -0.072 4.072 11 C -0.123 4.123 12 C 0.112 3.888 13 N -0.611 5.611 14 C -0.320 4.320 15 H 0.077 0.923 16 C -0.023 4.023 17 N -0.929 5.929 18 Si 1.073 2.927 19 H -0.303 1.303 20 H -0.299 1.299 21 H -0.287 1.287 22 C 0.147 3.853 23 C -0.118 4.118 24 C 0.105 3.895 25 N -0.454 5.454 26 C -0.054 4.054 27 C -0.033 4.033 28 N -0.496 5.496 29 C 0.180 3.820 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.026 0.974 43 H 0.261 0.739 44 H 0.023 0.977 45 H 0.042 0.958 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.082 0.918 49 H 0.075 0.925 50 H 0.173 0.827 51 H 0.168 0.832 52 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.557 -4.722 25.451 26.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 H 0.127 0.873 4 C -0.193 4.193 5 C 0.308 3.692 6 O -0.420 6.420 7 N -0.335 5.335 8 C -0.011 4.011 9 C -0.150 4.150 10 C -0.073 4.073 11 C -0.161 4.161 12 C -0.013 4.013 13 N -0.339 5.339 14 C -0.447 4.447 15 H 0.095 0.905 16 C -0.222 4.222 17 N -0.571 5.571 18 Si 0.907 3.093 19 H -0.231 1.231 20 H -0.228 1.228 21 H -0.215 1.215 22 C 0.021 3.979 23 C -0.156 4.156 24 C -0.017 4.017 25 N -0.137 5.137 26 C -0.187 4.187 27 C -0.181 4.181 28 N -0.214 5.214 29 C -0.102 4.102 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.061 0.939 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.094 0.906 50 H 0.190 0.810 51 H 0.185 0.815 52 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.709 -5.595 24.501 26.598 hybrid contribution 1.142 1.422 0.677 1.945 sum -7.567 -4.173 25.178 26.620 Atomic orbital electron populations 1.22298 0.92283 1.03045 1.04789 1.21163 0.96292 0.96905 0.81084 0.87267 1.22041 1.03912 1.00900 0.92427 1.20148 0.79425 0.85402 0.84220 1.90686 1.40651 1.24577 1.86133 1.48130 1.54551 1.24907 1.05938 1.21792 0.97385 0.97328 0.84597 1.21641 0.95822 0.96882 1.00610 1.21108 0.97271 0.95062 0.93861 1.22660 0.99195 0.98521 0.95683 1.21985 0.89856 0.94884 0.94552 1.44854 1.19844 1.63856 1.05345 1.20156 1.15468 1.23822 0.85299 0.90543 1.25858 1.01852 1.03669 0.90838 1.70890 1.38262 1.15318 1.32595 0.83797 0.76088 0.75611 0.73777 1.23108 1.22836 1.21457 1.21538 0.92797 0.98516 0.85064 1.21744 0.96539 1.01481 0.95866 1.21885 0.93296 0.85664 1.00881 1.45786 1.37921 1.11530 1.18449 1.22792 1.02346 1.01352 0.92206 1.22312 1.04790 0.89559 1.01424 1.70315 1.12294 1.28204 1.10622 1.24877 1.03846 0.85456 0.96011 0.92150 0.91810 0.88294 0.87980 0.87953 0.88971 0.91021 0.91854 0.89426 0.91335 0.91504 0.93825 0.95635 0.92886 0.95896 0.93933 0.90238 0.91494 0.90007 0.90642 0.81002 0.81452 0.78318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 8.98 37.16 0.33 -0.81 16 2 C 0.15 1.02 2.70 -67.93 -0.18 0.84 16 3 H 0.11 0.82 7.90 -51.93 -0.41 0.41 16 4 C -0.15 -0.97 3.52 -27.88 -0.10 -1.07 16 5 C 0.52 4.96 7.41 -10.98 -0.08 4.88 16 6 O -0.54 -6.76 13.37 5.56 0.07 -6.68 16 7 N -0.60 -5.80 2.96 -172.56 -0.51 -6.31 16 8 C 0.11 1.26 6.12 -3.63 -0.02 1.24 16 9 C -0.11 -1.52 4.87 -27.01 -0.13 -1.65 16 10 C -0.07 -0.99 0.55 -153.98 -0.08 -1.08 16 11 C -0.12 -1.80 4.91 -25.24 -0.12 -1.92 16 12 C 0.11 2.29 4.24 -2.96 -0.01 2.28 16 13 N -0.61 -14.27 3.31 -170.17 -0.56 -14.84 16 14 C -0.32 -8.99 10.56 -15.06 -0.16 -9.14 16 15 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 16 C -0.02 -0.67 5.50 -17.43 -0.10 -0.77 16 17 N -0.93 -29.04 13.70 55.49 0.76 -28.28 16 18 Si 1.07 26.54 24.53 -169.99 -4.17 22.38 16 19 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 20 H -0.30 -7.16 6.84 56.52 0.39 -6.78 16 21 H -0.29 -6.43 5.43 56.52 0.31 -6.13 16 22 C 0.15 2.72 6.16 -2.74 -0.02 2.70 16 23 C -0.12 -1.19 4.84 -26.99 -0.13 -1.32 16 24 C 0.11 0.83 6.07 -3.61 -0.02 0.81 16 25 N -0.45 -3.43 2.62 -111.46 -0.29 -3.73 16 26 C -0.05 -0.42 11.54 -16.57 -0.19 -0.61 16 27 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 28 N -0.50 -5.37 11.25 -14.66 -0.16 -5.54 16 29 C 0.18 1.50 11.65 -90.37 -1.05 0.45 16 30 H 0.06 0.35 7.94 -51.93 -0.41 -0.06 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.85 5.95 -51.93 -0.31 0.54 16 33 H 0.10 0.47 7.87 -51.93 -0.41 0.07 16 34 H 0.10 0.62 7.70 -51.93 -0.40 0.22 16 35 H 0.09 1.13 6.99 -51.93 -0.36 0.77 16 36 H 0.07 0.79 6.55 -51.93 -0.34 0.45 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.42 7.82 -51.93 -0.41 1.02 16 39 H 0.07 0.87 6.17 -51.93 -0.32 0.55 16 40 H 0.07 0.89 7.98 -51.93 -0.41 0.48 16 41 H 0.04 0.94 6.79 -51.93 -0.35 0.59 16 42 H 0.03 0.57 3.81 -51.93 -0.20 0.37 16 43 H 0.26 8.08 8.73 -40.82 -0.36 7.72 16 44 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 45 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 46 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.08 0.45 5.91 -51.93 -0.31 0.14 16 49 H 0.08 0.56 7.62 -51.93 -0.40 0.16 16 50 H 0.17 0.91 8.06 -52.48 -0.42 0.49 16 51 H 0.17 1.17 8.06 -52.48 -0.42 0.74 16 52 H 0.20 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 389.12 15.07 5.86 5.86 Total: -1.00 -34.61 389.12 -9.80 -44.40 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -8.51 Total: -1.59 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.28 Total: -5.68 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.77 Total: -58.69 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: 0.07 Total: -6.68 kcal Atomic # 14 Polarization: 26.54 SS G_CDS: -4.17 Total: 22.38 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.61 -9.80 -44.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035232065.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.143 kcal (2) G-P(sol) polarization free energy of solvation -34.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds