Wall clock time and date at job start Wed Apr 1 2020 05:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46775 * 2 1 4 4 C 1.53007 * 109.47178 * 240.00713 * 2 1 3 5 5 C 1.50703 * 109.47140 * 64.99663 * 4 2 1 6 6 O 1.21275 * 120.00111 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99612 * 180.02562 * 5 4 2 8 8 C 1.46928 * 120.55057 * 179.97438 * 7 5 4 9 9 C 1.53342 * 108.68473 * 125.63017 * 8 7 5 10 10 C 1.52110 * 109.44249 * 53.30481 * 9 8 7 11 11 C 1.54385 * 110.50739 * 64.08966 * 10 9 8 12 12 C 1.54457 * 102.87109 * 83.33374 * 11 10 9 13 13 N 1.47083 * 107.29725 * 21.50085 * 12 11 10 14 14 C 1.36935 * 125.62931 * 180.96847 * 13 12 11 15 15 H 1.08003 * 119.99937 * 168.95343 * 14 13 12 16 16 C 1.38811 * 119.99964 * 348.94815 * 14 13 12 17 17 N 1.31619 * 119.99929 * 165.65470 * 16 14 13 18 18 Si 1.86799 * 120.00069 * 345.65523 * 16 14 13 19 19 H 1.48500 * 109.47088 * 185.28736 * 18 16 14 20 20 H 1.48495 * 109.46844 * 305.28614 * 18 16 14 21 21 H 1.48497 * 109.46908 * 65.28631 * 18 16 14 22 22 C 1.47575 * 108.74515 * 1.23423 * 13 12 11 23 23 C 1.52103 * 111.59976 * 300.69054 * 10 9 8 24 24 C 1.46928 * 120.55101 * 359.97438 * 7 5 4 25 25 N 1.46492 * 109.47312 * 120.00053 * 2 1 3 26 26 C 1.36875 * 126.40490 * 240.00007 * 25 2 1 27 27 C 1.34660 * 106.82428 * 180.02562 * 26 25 2 28 28 N 1.34136 * 108.02098 * 0.02562 * 27 26 25 29 29 C 1.30503 * 109.25122 * 359.72277 * 28 27 26 30 30 H 1.09002 * 109.46890 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47061 * 299.99919 * 1 2 3 32 32 H 1.09004 * 109.46785 * 59.99762 * 1 2 3 33 33 H 1.09003 * 109.46477 * 304.99690 * 4 2 1 34 34 H 1.08995 * 109.46755 * 184.99943 * 4 2 1 35 35 H 1.08999 * 109.60337 * 5.87416 * 8 7 5 36 36 H 1.09002 * 109.60479 * 245.38772 * 8 7 5 37 37 H 1.08999 * 109.47461 * 293.31423 * 9 8 7 38 38 H 1.08999 * 109.48299 * 173.29949 * 9 8 7 39 39 H 1.08995 * 110.73888 * 324.98680 * 11 10 9 40 40 H 1.09004 * 110.73381 * 201.67143 * 11 10 9 41 41 H 1.09003 * 109.87682 * 262.08138 * 12 11 10 42 42 H 1.09002 * 109.88538 * 140.92812 * 12 11 10 43 43 H 0.97002 * 120.00420 * 354.93210 * 17 16 14 44 44 H 1.09003 * 110.37719 * 95.25320 * 22 13 12 45 45 H 1.08995 * 110.38134 * 217.60924 * 22 13 12 46 46 H 1.08994 * 109.47603 * 179.28981 * 23 10 9 47 47 H 1.09001 * 109.48068 * 299.31611 * 23 10 9 48 48 H 1.08992 * 109.60702 * 354.12479 * 24 7 5 49 49 H 1.08995 * 109.60156 * 114.60997 * 24 7 5 50 50 H 1.08007 * 126.58677 * 0.03911 * 26 25 2 51 51 H 1.08006 * 125.99356 * 180.02562 * 27 26 25 52 52 H 1.08001 * 125.64831 * 180.28739 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6413 0.0573 -2.4767 6 8 1.0117 1.0876 -2.3632 7 7 1.9845 -0.3916 -3.7003 8 6 1.6016 0.3573 -4.9050 9 6 2.8627 0.6364 -5.7314 10 6 3.6010 -0.6691 -5.9852 11 6 2.7408 -1.6183 -6.8469 12 6 3.0233 -1.1288 -8.2844 13 7 4.3001 -0.3993 -8.2550 14 6 4.8957 0.2098 -9.3271 15 1 5.7373 0.8693 -9.1746 16 6 4.4179 -0.0205 -10.6098 17 7 4.7890 0.7623 -11.6007 18 14 3.2480 -1.4412 -10.9298 19 1 2.9884 -1.5500 -12.3878 20 1 3.8572 -2.7038 -10.4399 21 1 1.9686 -1.1993 -10.2158 22 6 4.8366 -0.4376 -6.8808 23 6 4.0026 -1.3473 -4.6842 24 6 2.7476 -1.6380 -3.8516 25 7 2.0184 -0.6906 1.1961 26 6 2.8085 -0.1555 2.1773 27 6 3.0191 -1.1298 3.0827 28 7 2.3756 -2.2303 2.6653 29 6 1.7694 -1.9729 1.5387 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6054 -1.7197 -1.2953 34 1 3.1263 -0.7993 -1.2057 35 1 1.1370 1.3003 -4.6171 36 1 0.9008 -0.2331 -5.4954 37 1 3.5116 1.3205 -5.1845 38 1 2.5813 1.0857 -6.6838 39 1 1.6840 -1.5097 -6.6030 40 1 3.0628 -2.6520 -6.7211 41 1 2.2243 -0.4643 -8.6133 42 1 3.0994 -1.9821 -8.9584 43 1 5.3368 1.5429 -11.4232 44 1 5.5457 -1.2584 -6.7729 45 1 5.3123 0.5111 -6.6324 46 1 4.5164 -2.2826 -4.9056 47 1 4.6676 -0.6912 -4.1225 48 1 3.0386 -2.0102 -2.8694 49 1 2.1353 -2.3822 -4.3607 50 1 3.1895 0.8543 2.2178 51 1 3.6038 -1.0409 3.9865 52 1 1.1698 -2.6706 0.9729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035232065.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:17 Heat of formation + Delta-G solvation = 42.275137 kcal Electronic energy + Delta-G solvation = -31334.875955 eV Core-core repulsion = 27335.581024 eV Total energy + Delta-G solvation = -3999.294930 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.00685 -41.69740 -40.24859 -37.55394 -36.53343 -34.97417 -33.14427 -32.55131 -31.67217 -30.65830 -30.13526 -29.34055 -28.24701 -25.45747 -24.86442 -24.14145 -23.83846 -22.36691 -22.22121 -21.45294 -20.59078 -19.79814 -18.92824 -18.54872 -17.47985 -17.06709 -16.96607 -16.81290 -16.63148 -16.08954 -15.59617 -15.53015 -15.11012 -15.01486 -14.92366 -14.78511 -14.63334 -14.52904 -14.21062 -14.16619 -13.98685 -13.73672 -13.57497 -13.22389 -13.04618 -12.88228 -12.82060 -12.57281 -12.50222 -12.24128 -12.16822 -11.90043 -11.68275 -11.57051 -11.44271 -11.30568 -10.97339 -10.91050 -10.79336 -10.62271 -10.56615 -9.62701 -9.41149 -9.06505 -8.66085 -5.47536 1.17820 1.38851 1.49067 1.56415 1.65411 1.71696 2.15580 2.27739 2.54834 3.11622 3.32008 3.41157 3.48325 3.53989 3.71301 3.75949 3.82826 3.91430 4.04441 4.06150 4.09505 4.19724 4.25806 4.30928 4.43701 4.45641 4.50363 4.58990 4.62382 4.63874 4.69541 4.74035 4.75957 4.78801 4.82726 4.88522 4.90100 4.90959 5.04449 5.07677 5.09344 5.21429 5.24589 5.38413 5.41120 5.42344 5.52663 5.60428 5.86029 6.09936 6.31847 6.40444 6.82737 7.11418 7.19296 7.45753 8.10360 8.86645 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.002178 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.791836 B =12855.500283 C =13046.366630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.154 3.846 3 H 0.100 0.900 4 C -0.142 4.142 5 C 0.520 3.480 6 O -0.576 6.576 7 N -0.603 5.603 8 C 0.121 3.879 9 C -0.106 4.106 10 C -0.058 4.058 11 C -0.109 4.109 12 C 0.099 3.901 13 N -0.632 5.632 14 C -0.307 4.307 15 H 0.040 0.960 16 C -0.085 4.085 17 N -0.967 5.967 18 Si 1.114 2.886 19 H -0.316 1.316 20 H -0.283 1.283 21 H -0.250 1.250 22 C 0.139 3.861 23 C -0.113 4.113 24 C 0.107 3.893 25 N -0.451 5.451 26 C -0.055 4.055 27 C -0.056 4.056 28 N -0.537 5.537 29 C 0.181 3.819 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.028 0.972 42 H 0.021 0.979 43 H 0.245 0.755 44 H 0.032 0.968 45 H 0.024 0.976 46 H 0.096 0.904 47 H 0.066 0.934 48 H 0.116 0.884 49 H 0.094 0.906 50 H 0.192 0.808 51 H 0.177 0.823 52 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.220 -7.863 28.229 30.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 H 0.118 0.882 4 C -0.182 4.182 5 C 0.309 3.691 6 O -0.457 6.457 7 N -0.335 5.335 8 C -0.002 4.002 9 C -0.145 4.145 10 C -0.059 4.059 11 C -0.147 4.147 12 C -0.025 4.025 13 N -0.360 5.360 14 C -0.436 4.436 15 H 0.058 0.942 16 C -0.277 4.277 17 N -0.612 5.612 18 Si 0.942 3.058 19 H -0.246 1.246 20 H -0.211 1.211 21 H -0.175 1.175 22 C 0.014 3.986 23 C -0.152 4.152 24 C -0.015 4.015 25 N -0.134 5.134 26 C -0.188 4.188 27 C -0.203 4.203 28 N -0.256 5.256 29 C -0.102 4.102 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.149 0.851 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.046 0.954 42 H 0.038 0.962 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.042 0.958 46 H 0.114 0.886 47 H 0.085 0.915 48 H 0.134 0.866 49 H 0.112 0.888 50 H 0.209 0.791 51 H 0.195 0.805 52 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -10.362 -8.749 27.355 30.532 hybrid contribution 1.766 2.539 -0.123 3.095 sum -8.596 -6.210 27.232 29.224 Atomic orbital electron populations 1.22218 0.92315 1.03718 1.03626 1.21093 0.96157 0.96533 0.81167 0.88231 1.22015 1.04698 1.01458 0.90068 1.20661 0.78579 0.85019 0.84854 1.90690 1.42168 1.26241 1.86594 1.48172 1.54726 1.25358 1.05277 1.21528 0.95885 0.97500 0.85261 1.21523 0.96965 0.96704 0.99259 1.21017 0.94518 0.95313 0.95031 1.22684 1.01076 0.99637 0.91259 1.22157 0.87730 0.93900 0.98674 1.44942 1.21300 1.63892 1.05872 1.20035 1.13947 1.22398 0.87216 0.94235 1.27211 1.03881 1.05635 0.90986 1.70999 1.40359 1.16094 1.33746 0.83329 0.76096 0.73164 0.73185 1.24610 1.21051 1.17515 1.21782 0.95267 0.97817 0.83725 1.21731 0.98057 1.01699 0.93671 1.22087 0.91953 0.84882 1.02554 1.45807 1.37684 1.11412 1.18452 1.23136 1.01899 1.01977 0.91831 1.22618 1.05467 0.89779 1.02391 1.70290 1.13757 1.29372 1.12148 1.25414 1.03275 0.85924 0.95538 0.90549 0.92417 0.89962 0.85084 0.86759 0.90334 0.89878 0.92839 0.92901 0.88484 0.88800 0.95355 0.96154 0.94593 0.95063 0.95806 0.88571 0.91503 0.86582 0.88822 0.79094 0.80541 0.75559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.98 71.98 0.65 -1.15 16 2 C 0.15 1.63 2.70 45.00 0.12 1.75 16 3 H 0.10 1.28 7.90 -2.39 -0.02 1.26 16 4 C -0.14 -1.16 3.52 29.85 0.11 -1.05 16 5 C 0.52 8.09 7.41 87.66 0.65 8.74 16 6 O -0.58 -13.32 13.37 -3.02 -0.04 -13.36 16 7 N -0.60 -9.15 2.96 -818.25 -2.42 -11.57 16 8 C 0.12 2.47 6.12 86.41 0.53 3.00 16 9 C -0.11 -2.78 4.87 30.42 0.15 -2.63 16 10 C -0.06 -1.44 0.55 -51.84 -0.03 -1.47 16 11 C -0.11 -2.72 4.91 31.56 0.16 -2.57 16 12 C 0.10 3.87 4.24 86.76 0.37 4.23 16 13 N -0.63 -29.61 3.31 -692.29 -2.29 -31.90 16 14 C -0.31 -17.92 10.56 84.03 0.89 -17.03 16 15 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 16 C -0.09 -5.13 5.50 84.86 0.47 -4.66 16 17 N -0.97 -63.28 13.70 21.65 0.30 -62.98 16 18 Si 1.11 53.73 24.53 68.60 1.68 55.41 16 19 H -0.32 -15.87 7.11 99.48 0.71 -15.17 16 20 H -0.28 -12.73 6.84 99.48 0.68 -12.05 16 21 H -0.25 -10.49 5.43 99.48 0.54 -9.95 16 22 C 0.14 5.05 6.16 86.63 0.53 5.59 16 23 C -0.11 -1.75 4.84 30.43 0.15 -1.60 16 24 C 0.11 1.04 6.07 86.43 0.53 1.56 16 25 N -0.45 -5.46 2.62 -506.55 -1.33 -6.78 16 26 C -0.06 -0.74 11.54 83.09 0.96 0.22 16 27 C -0.06 -0.93 11.87 83.52 0.99 0.06 16 28 N -0.54 -10.56 11.25 -200.30 -2.25 -12.81 16 29 C 0.18 2.43 11.65 180.26 2.10 4.53 16 30 H 0.08 0.59 7.94 -2.39 -0.02 0.58 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 1.26 5.95 -2.39 -0.01 1.25 16 33 H 0.13 0.38 7.87 -2.39 -0.02 0.36 16 34 H 0.11 0.76 7.70 -2.39 -0.02 0.74 16 35 H 0.08 1.85 6.99 -2.39 -0.02 1.84 16 36 H 0.08 1.53 6.55 -2.39 -0.02 1.51 16 37 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.05 1.74 7.82 -2.39 -0.02 1.72 16 39 H 0.10 1.93 6.17 -2.39 -0.01 1.92 16 40 H 0.09 1.92 7.98 -2.38 -0.02 1.90 16 41 H 0.03 1.19 6.79 -2.39 -0.02 1.17 16 42 H 0.02 0.85 3.81 -2.39 -0.01 0.84 16 43 H 0.25 16.17 8.73 -92.71 -0.81 15.36 16 44 H 0.03 1.10 8.00 -2.39 -0.02 1.09 16 45 H 0.02 0.93 8.03 -2.39 -0.02 0.91 16 46 H 0.10 1.27 8.09 -2.39 -0.02 1.25 16 47 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.12 0.44 5.91 -2.39 -0.01 0.42 16 49 H 0.09 0.69 7.62 -2.39 -0.02 0.67 16 50 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 51 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 52 H 0.23 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -81.53 389.12 3.63 -77.90 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.68 Total: 8.57 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 9.30 Total: -2.48 kcal Atomic # 7 Polarization: -118.05 SS G_CDS: -8.00 Total: -126.05 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.04 Total: -13.36 kcal Atomic # 14 Polarization: 53.73 SS G_CDS: 1.68 Total: 55.41 kcal Total: -81.53 3.63 -77.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035232065.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.175 kcal (2) G-P(sol) polarization free energy of solvation -81.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds