Wall clock time and date at job start Wed Apr 1 2020 04:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.46749 * 2 1 4 4 C 1.53003 * 109.46888 * 119.99802 * 2 1 3 5 5 C 1.50701 * 109.46895 * 294.99732 * 4 2 1 6 6 C 1.34667 * 126.59188 * 85.02664 * 5 4 2 7 7 N 1.34130 * 108.02521 * 179.97438 * 6 5 4 8 8 C 1.30504 * 109.25216 * 0.02562 * 7 6 5 9 9 N 1.35045 * 108.70128 * 359.76973 * 8 7 6 10 10 H 0.96996 * 126.39897 * 180.27295 * 9 8 7 11 11 C 1.50702 * 109.47039 * 239.99506 * 2 1 3 12 12 O 1.21280 * 119.99551 * 263.64035 * 11 2 1 13 13 N 1.34773 * 119.99741 * 83.63434 * 11 2 1 14 14 C 1.46930 * 120.55576 * 5.50403 * 13 11 2 15 15 C 1.53336 * 108.68897 * 125.62427 * 14 13 11 16 16 C 1.52110 * 109.44326 * 53.30519 * 15 14 13 17 17 C 1.54390 * 110.50932 * 64.08917 * 16 15 14 18 18 C 1.54458 * 102.86765 * 83.33159 * 17 16 15 19 19 N 1.47071 * 107.29796 * 21.51018 * 18 17 16 20 20 C 1.36942 * 125.62795 * 180.96803 * 19 18 17 21 21 H 1.08007 * 119.99890 * 172.29043 * 20 19 18 22 22 C 1.38810 * 120.00043 * 352.28470 * 20 19 18 23 23 N 1.31612 * 119.99836 * 167.51968 * 22 20 19 24 24 Si 1.86798 * 119.99757 * 347.52171 * 22 20 19 25 25 H 1.48501 * 109.47102 * 185.82132 * 24 22 20 26 26 H 1.48500 * 109.47240 * 305.82352 * 24 22 20 27 27 H 1.48497 * 109.47361 * 65.82325 * 24 22 20 28 28 C 1.47582 * 108.74578 * 1.22439 * 19 18 17 29 29 C 1.52111 * 111.59890 * 300.69498 * 16 15 14 30 30 C 1.46933 * 120.55115 * 185.47850 * 13 11 2 31 31 H 1.09007 * 109.47118 * 305.64917 * 1 2 3 32 32 H 1.08998 * 109.47760 * 65.65205 * 1 2 3 33 33 H 1.09003 * 109.47233 * 185.65505 * 1 2 3 34 34 H 1.08998 * 109.47405 * 54.99492 * 4 2 1 35 35 H 1.09001 * 109.47134 * 175.00411 * 4 2 1 36 36 H 1.08003 * 125.99159 * 359.96740 * 6 5 4 37 37 H 1.07997 * 125.65067 * 180.02562 * 8 7 6 38 38 H 1.09008 * 109.60405 * 5.86076 * 14 13 11 39 39 H 1.09004 * 109.60347 * 245.38731 * 14 13 11 40 40 H 1.08999 * 109.48076 * 293.31568 * 15 14 13 41 41 H 1.08999 * 109.47775 * 173.29564 * 15 14 13 42 42 H 1.09008 * 110.73208 * 324.99016 * 17 16 15 43 43 H 1.08993 * 110.73757 * 201.68087 * 17 16 15 44 44 H 1.08995 * 109.87851 * 262.07937 * 18 17 16 45 45 H 1.09003 * 109.87333 * 140.93482 * 18 17 16 46 46 H 0.96998 * 120.00387 * 5.07683 * 23 22 20 47 47 H 1.09002 * 110.36930 * 95.26137 * 28 19 18 48 48 H 1.08997 * 110.37741 * 217.60943 * 28 19 18 49 49 H 1.09001 * 109.47331 * 179.29226 * 29 16 15 50 50 H 1.08995 * 109.47422 * 299.31006 * 29 16 15 51 51 H 1.09001 * 109.59605 * 354.13233 * 30 13 11 52 52 H 1.09001 * 109.59868 * 114.60645 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 6 0.4666 -0.0211 3.1304 7 7 0.5105 0.8300 4.1661 8 6 1.6678 1.4331 4.1787 9 7 2.4054 0.9762 3.1439 10 1 3.3077 1.2491 2.9154 11 6 2.0323 -0.7105 -1.2304 12 8 2.3441 -1.8810 -1.1698 13 7 2.1349 -0.0452 -2.3980 14 6 1.8761 1.3998 -2.4596 15 6 3.0921 2.0904 -3.0885 16 6 3.4161 1.4310 -4.4205 17 6 2.2582 1.6354 -5.4210 18 6 2.5451 3.0396 -5.9969 19 7 3.9718 3.3198 -5.7759 20 6 4.6219 4.4732 -6.1260 21 1 5.6421 4.6351 -5.8107 22 6 3.9696 5.4341 -6.8863 23 7 4.4915 6.6352 -7.0173 24 14 2.3512 5.0224 -7.7234 25 1 1.9340 6.1605 -8.5811 26 1 2.5220 3.8080 -8.5608 27 1 1.3111 4.7713 -6.6937 28 6 4.5888 2.1505 -5.1200 29 6 3.7204 -0.0499 -4.2529 30 6 2.5080 -0.7528 -3.6305 31 1 -0.3634 0.5990 0.8351 32 1 -0.3634 0.4237 -0.9362 33 1 -0.3634 -1.0227 0.1013 34 1 1.6053 -1.7197 1.2953 35 1 3.1263 -0.7994 1.2057 36 1 -0.3653 -0.6575 2.8668 37 1 1.9848 2.1719 4.8999 38 1 1.7164 1.7860 -1.4528 39 1 0.9927 1.5874 -3.0700 40 1 3.9482 1.9989 -2.4201 41 1 2.8681 3.1448 -3.2500 42 1 1.2968 1.6180 -4.9075 43 1 2.2904 0.8817 -6.2077 44 1 1.9371 3.7830 -5.4814 45 1 2.3256 3.0542 -7.0645 46 1 5.3663 6.8272 -6.6449 47 1 5.0490 1.4982 -5.8622 48 1 5.3276 2.4728 -4.3864 49 1 3.9348 -0.4893 -5.2270 50 1 4.5853 -0.1716 -3.6008 51 1 2.7650 -1.7857 -3.3955 52 1 1.6733 -0.7315 -4.3313 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035237370.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:44 Heat of formation + Delta-G solvation = 51.685417 kcal Electronic energy + Delta-G solvation = -31563.523536 eV Core-core repulsion = 27564.636666 eV Total energy + Delta-G solvation = -3998.886870 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.39306 -40.76991 -39.08846 -36.14848 -35.38372 -33.26478 -32.77871 -31.60777 -31.03854 -30.02570 -29.11263 -27.31897 -26.97373 -24.51845 -23.52955 -23.32728 -22.46384 -21.70834 -21.11946 -20.47438 -19.61796 -18.38117 -18.16897 -17.44482 -16.93443 -16.22905 -15.69137 -15.44703 -15.29988 -15.19457 -14.82498 -14.26932 -14.14316 -14.04344 -13.87906 -13.69355 -13.50617 -13.40198 -13.14707 -12.87436 -12.80446 -12.51464 -12.41469 -12.29678 -11.93852 -11.69063 -11.59602 -11.38606 -11.30983 -11.18152 -11.01330 -10.48963 -10.36761 -10.32679 -10.31251 -10.29117 -9.87272 -9.76564 -9.34864 -8.96718 -8.78698 -8.70415 -8.65315 -7.05378 -6.30936 -3.23363 1.68412 2.44463 2.71856 2.83825 2.92907 3.35855 3.44043 3.66535 4.11552 4.39007 4.43266 4.54932 4.56919 4.61797 4.70128 4.73164 4.81548 4.95111 4.98144 5.02898 5.09273 5.17095 5.20185 5.28863 5.34441 5.41237 5.42544 5.45736 5.50477 5.58238 5.62898 5.68192 5.71782 5.77906 5.82730 5.88716 5.90580 5.96939 6.02573 6.18257 6.25813 6.32236 6.35992 6.41330 6.43805 6.58694 6.71974 6.73608 7.02496 7.25263 7.63515 7.74300 7.99582 8.30711 9.03238 9.54759 10.21863 11.18986 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.002573 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.591277 B =10879.015666 C =11728.967211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 H 0.093 0.907 4 C -0.026 4.026 5 C -0.019 4.019 6 C -0.021 4.021 7 N -0.495 5.495 8 C 0.182 3.818 9 N -0.567 5.567 10 H 0.420 0.580 11 C 0.520 3.480 12 O -0.546 6.546 13 N -0.605 5.605 14 C 0.102 3.898 15 C -0.113 4.113 16 C -0.071 4.071 17 C -0.121 4.121 18 C 0.100 3.900 19 N -0.612 5.612 20 C -0.319 4.319 21 H 0.077 0.923 22 C -0.028 4.028 23 N -0.933 5.933 24 Si 1.083 2.917 25 H -0.303 1.303 26 H -0.299 1.299 27 H -0.287 1.287 28 C 0.148 3.852 29 C -0.116 4.116 30 C 0.113 3.887 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.168 0.832 37 H 0.207 0.793 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.033 0.967 46 H 0.260 0.740 47 H 0.023 0.977 48 H 0.042 0.958 49 H 0.076 0.924 50 H 0.065 0.935 51 H 0.090 0.910 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.607 -14.808 17.420 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.111 0.889 4 C -0.065 4.065 5 C -0.134 4.134 6 C -0.169 4.169 7 N -0.214 5.214 8 C -0.102 4.102 9 N -0.170 5.170 10 H 0.257 0.743 11 C 0.308 3.692 12 O -0.424 6.424 13 N -0.338 5.338 14 C -0.020 4.020 15 C -0.151 4.151 16 C -0.072 4.072 17 C -0.159 4.159 18 C -0.025 4.025 19 N -0.340 5.340 20 C -0.446 4.446 21 H 0.094 0.906 22 C -0.227 4.227 23 N -0.575 5.575 24 Si 0.918 3.082 25 H -0.232 1.232 26 H -0.229 1.229 27 H -0.214 1.214 28 C 0.022 3.978 29 C -0.154 4.154 30 C -0.009 4.009 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.186 0.814 37 H 0.224 0.776 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.070 0.930 47 H 0.041 0.959 48 H 0.060 0.940 49 H 0.095 0.905 50 H 0.083 0.917 51 H 0.108 0.892 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.293 -14.574 17.096 23.947 hybrid contribution 2.553 -0.434 0.070 2.591 sum -5.739 -15.008 17.167 23.513 Atomic orbital electron populations 1.21800 0.91956 1.03231 1.03039 1.21323 0.98584 1.00568 0.92376 0.88910 1.19868 1.01564 0.97983 0.87077 1.21239 0.94152 0.98580 0.99452 1.22120 0.97546 1.02468 0.94747 1.70305 1.19463 1.10141 1.21465 1.24987 0.88786 1.02747 0.93663 1.43348 1.16542 1.32983 1.24172 0.74273 1.20520 0.77313 0.87024 0.84300 1.90678 1.50016 1.16705 1.85025 1.48132 1.68109 1.09263 1.08254 1.21999 0.98976 0.79167 1.01853 1.21647 0.97080 1.00718 0.95624 1.21095 0.97326 0.94007 0.94803 1.22635 0.97587 0.97712 0.97937 1.22118 0.87698 0.94688 0.97994 1.44838 1.03429 1.14598 1.71151 1.20168 0.99232 0.93937 1.31307 0.90552 1.25809 1.05563 0.93012 0.98274 1.70908 1.18365 1.18399 1.49865 0.83669 0.75628 0.72862 0.76042 1.23205 1.22859 1.21410 1.21525 0.93262 0.88774 0.94251 1.21723 0.97621 0.94875 1.01214 1.21659 0.97345 0.96997 0.84941 0.90792 0.91988 0.91633 0.88286 0.90766 0.81429 0.77643 0.89768 0.90748 0.91889 0.89397 0.91372 0.91513 0.93514 0.94974 0.92988 0.95925 0.94001 0.90509 0.91656 0.89174 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.69 37.16 0.32 -0.74 16 2 C -0.11 -0.89 1.94 -91.77 -0.18 -1.06 16 3 H 0.09 0.71 6.09 -51.93 -0.32 0.40 16 4 C -0.03 -0.21 4.67 -27.88 -0.13 -0.34 16 5 C -0.02 -0.15 6.09 -81.60 -0.50 -0.65 16 6 C -0.02 -0.20 10.23 -17.81 -0.18 -0.38 16 7 N -0.49 -5.23 11.25 -14.66 -0.16 -5.39 16 8 C 0.18 1.36 13.04 -90.37 -1.18 0.18 16 9 N -0.57 -3.69 6.15 -10.30 -0.06 -3.75 16 10 H 0.42 1.61 8.96 -40.82 -0.37 1.25 16 11 C 0.52 5.81 6.81 -10.99 -0.07 5.73 16 12 O -0.55 -7.78 15.59 5.56 0.09 -7.70 16 13 N -0.60 -6.54 2.96 -172.57 -0.51 -7.05 16 14 C 0.10 1.04 5.91 -3.63 -0.02 1.02 16 15 C -0.11 -1.47 4.87 -27.01 -0.13 -1.60 16 16 C -0.07 -1.02 0.55 -153.98 -0.08 -1.10 16 17 C -0.12 -1.83 4.92 -25.24 -0.12 -1.95 16 18 C 0.10 2.05 4.26 -2.97 -0.01 2.03 16 19 N -0.61 -14.34 3.34 -170.18 -0.57 -14.91 16 20 C -0.32 -8.95 10.59 -15.06 -0.16 -9.11 16 21 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 22 C -0.03 -0.81 5.50 -17.43 -0.10 -0.91 16 23 N -0.93 -29.15 13.70 55.49 0.76 -28.39 16 24 Si 1.08 26.66 24.50 -169.99 -4.16 22.50 16 25 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 26 H -0.30 -7.11 6.53 56.52 0.37 -6.74 16 27 H -0.29 -6.38 5.45 56.52 0.31 -6.07 16 28 C 0.15 2.79 6.16 -2.75 -0.02 2.77 16 29 C -0.12 -1.39 4.84 -27.01 -0.13 -1.52 16 30 C 0.11 1.25 6.17 -3.63 -0.02 1.23 16 31 H 0.07 0.54 6.57 -51.93 -0.34 0.20 16 32 H 0.06 0.46 8.05 -51.93 -0.42 0.04 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.84 8.04 -51.93 -0.42 0.42 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.17 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.08 0.71 5.38 -51.92 -0.28 0.43 16 39 H 0.07 0.74 6.55 -51.93 -0.34 0.40 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.35 7.82 -51.93 -0.41 0.94 16 42 H 0.07 0.88 6.17 -51.92 -0.32 0.56 16 43 H 0.07 0.95 7.98 -51.93 -0.41 0.53 16 44 H 0.05 1.00 6.27 -51.93 -0.33 0.68 16 45 H 0.03 0.72 3.92 -51.93 -0.20 0.52 16 46 H 0.26 8.03 8.73 -40.82 -0.36 7.68 16 47 H 0.02 0.44 8.00 -51.93 -0.42 0.02 16 48 H 0.04 0.80 8.03 -51.93 -0.42 0.39 16 49 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 50 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.09 1.06 6.99 -51.93 -0.36 0.70 16 52 H 0.07 0.71 7.62 -51.93 -0.40 0.32 16 LS Contribution 387.82 15.07 5.84 5.84 Total: -1.00 -35.38 387.82 -9.90 -45.28 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -8.40 Total: -0.04 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.72 Total: -6.39 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.55 Total: -59.50 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.09 Total: -7.70 kcal Atomic # 14 Polarization: 26.66 SS G_CDS: -4.16 Total: 22.50 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.38 -9.90 -45.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035237370.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.966 kcal (2) G-P(sol) polarization free energy of solvation -35.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds