Wall clock time and date at job start Wed Apr 1 2020 04:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47343 * 2 1 4 4 C 1.50708 * 109.46703 * 119.99562 * 2 1 3 5 5 O 1.21276 * 120.00084 * 34.66915 * 4 2 1 6 6 N 1.34774 * 119.99457 * 214.66371 * 4 2 1 7 7 C 1.46939 * 120.54874 * 174.57091 * 6 4 2 8 8 C 1.53341 * 108.68139 * 125.66860 * 7 6 4 9 9 C 1.52105 * 109.44678 * 53.30829 * 8 7 6 10 10 C 1.54384 * 110.50636 * 64.10240 * 9 8 7 11 11 C 1.54458 * 102.87410 * 152.62606 * 10 9 8 12 12 N 1.47083 * 107.29419 * 338.49808 * 11 10 9 13 13 C 1.36938 * 125.62421 * 178.99054 * 12 11 10 14 14 H 1.07999 * 119.99847 * 180.02562 * 13 12 11 15 15 C 1.38808 * 120.00060 * 0.02562 * 13 12 11 16 16 N 1.31617 * 120.00477 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00084 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47232 * 89.99913 * 17 15 13 19 19 H 1.48505 * 109.47406 * 209.99883 * 17 15 13 20 20 H 1.48501 * 109.47093 * 330.00118 * 17 15 13 21 21 C 1.47563 * 108.74518 * 359.01120 * 12 11 10 22 22 C 1.52105 * 111.60169 * 300.69815 * 9 8 7 23 23 C 1.46927 * 120.55870 * 354.59445 * 6 4 2 24 24 C 1.50698 * 109.47107 * 239.99291 * 2 1 3 25 25 C 1.39863 * 126.04365 * 300.02437 * 24 2 1 26 26 N 1.30840 * 108.20803 * 179.97438 * 25 24 2 27 27 N 1.40083 * 108.19941 * 0.02562 * 26 25 24 28 28 C 1.46506 * 126.03635 * 179.97438 * 27 26 25 29 29 C 1.34950 * 107.92805 * 359.75602 * 27 26 25 30 30 H 1.09003 * 109.46695 * 64.98118 * 1 2 3 31 31 H 1.09003 * 109.47445 * 184.97291 * 1 2 3 32 32 H 1.08996 * 109.47588 * 304.98174 * 1 2 3 33 33 H 1.09002 * 109.60446 * 5.90728 * 7 6 4 34 34 H 1.09004 * 109.60197 * 245.42517 * 7 6 4 35 35 H 1.09007 * 109.47175 * 293.31521 * 8 7 6 36 36 H 1.09006 * 109.47498 * 173.30846 * 8 7 6 37 37 H 1.09005 * 110.73226 * 34.27765 * 10 9 8 38 38 H 1.09001 * 110.73149 * 270.97212 * 10 9 8 39 39 H 1.08994 * 109.87801 * 97.92853 * 11 10 9 40 40 H 1.09008 * 109.87644 * 219.07518 * 11 10 9 41 41 H 0.96996 * 120.00387 * 179.97438 * 16 15 13 42 42 H 1.08999 * 110.37801 * 142.14674 * 21 12 11 43 43 H 1.09004 * 110.37794 * 264.37475 * 21 12 11 44 44 H 1.08998 * 109.47335 * 179.28047 * 22 9 8 45 45 H 1.09000 * 109.47530 * 299.29756 * 22 9 8 46 46 H 1.08996 * 109.60192 * 354.08511 * 23 6 4 47 47 H 1.09005 * 109.59858 * 114.56447 * 23 6 4 48 48 H 1.08007 * 125.90172 * 359.96159 * 25 24 2 49 49 H 1.09001 * 109.47024 * 89.97743 * 28 27 26 50 50 H 1.08998 * 109.47307 * 209.97732 * 28 27 26 51 51 H 1.08997 * 109.46966 * 329.97628 * 28 27 26 52 52 H 1.07998 * 126.12686 * 180.23593 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 8 1.4199 -1.6575 1.6764 6 7 3.1620 -0.2930 1.8356 7 6 3.5990 -0.8986 3.1010 8 6 5.0398 -1.3967 2.9354 9 6 5.9124 -0.2611 2.4231 10 6 5.9836 0.8778 3.4630 11 6 7.3508 1.5314 3.1645 12 7 8.1662 0.5346 2.4540 13 6 9.4412 0.7288 1.9938 14 1 9.9578 -0.0694 1.4814 15 6 10.0698 1.9514 2.1858 16 7 9.4406 2.9240 2.8107 17 14 11.8088 2.2165 1.5573 18 1 11.7588 2.7412 0.1690 19 1 12.5074 3.1934 2.4309 20 1 12.5428 0.9256 1.5724 21 6 7.3835 -0.7089 2.3187 22 6 5.4155 0.2678 1.0863 23 6 3.9768 0.7753 1.2411 24 6 2.0323 -0.7106 -1.2304 25 6 1.7731 -2.0408 -1.5759 26 7 2.3769 -2.2940 -2.7087 27 7 3.0409 -1.1312 -3.1201 28 6 3.8407 -0.9805 -4.3383 29 6 2.8097 -0.1728 -2.1986 30 1 -0.3633 0.4346 -0.9313 31 1 -0.3634 -1.0238 0.0891 32 1 -0.3634 0.5891 0.8419 33 1 2.9484 -1.7372 3.3491 34 1 3.5587 -0.1539 3.8960 35 1 5.0596 -2.2207 2.2219 36 1 5.4184 -1.7404 3.8980 37 1 5.9604 0.4769 4.4764 38 1 5.1734 1.5908 3.3103 39 1 7.2116 2.4118 2.5371 40 1 7.8389 1.8124 4.0979 41 1 9.8800 3.7782 2.9452 42 1 7.5713 -1.1721 1.3500 43 1 7.6292 -1.4016 3.1237 44 1 6.0563 1.0863 0.7585 45 1 5.4409 -0.5324 0.3467 46 1 3.5753 1.0402 0.2630 47 1 3.9655 1.6493 1.8925 48 1 1.1776 -2.7387 -1.0060 49 1 3.2001 -0.6464 -5.1545 50 1 4.6264 -0.2444 -4.1684 51 1 4.2906 -1.9387 -4.5983 52 1 3.1806 0.8411 -2.2276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035260459.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:11 Heat of formation + Delta-G solvation = 50.644902 kcal Electronic energy + Delta-G solvation = -32140.379295 eV Core-core repulsion = 28141.447305 eV Total energy + Delta-G solvation = -3998.931990 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.35921 -41.40582 -39.92080 -37.15470 -35.43990 -34.70471 -33.53836 -32.44063 -31.94864 -30.42523 -30.33072 -28.35206 -27.38269 -26.21859 -25.16998 -24.35680 -23.43021 -22.12789 -21.90533 -21.66481 -20.31575 -19.25322 -18.58614 -17.99658 -17.60646 -16.79730 -16.72192 -16.31968 -16.26948 -16.08299 -15.64625 -15.33396 -15.23812 -14.83331 -14.79990 -14.50565 -14.09689 -14.01356 -13.88193 -13.76428 -13.58632 -13.42722 -13.33426 -13.21193 -12.94758 -12.85890 -12.70333 -12.54936 -12.39501 -12.24680 -12.14191 -12.04950 -11.94093 -11.76276 -11.47513 -11.43042 -11.20540 -11.04063 -10.70543 -10.65599 -10.36971 -9.52704 -9.30936 -8.83506 -7.81737 -5.15930 0.93930 1.46563 1.47798 1.55913 1.56346 1.71435 1.88919 2.15839 2.51160 3.35979 3.55969 3.62367 3.69756 3.74796 3.81738 3.97485 4.01248 4.17880 4.20937 4.25273 4.27066 4.35911 4.39030 4.46165 4.48520 4.53351 4.66856 4.70692 4.72040 4.75736 4.83968 4.84850 4.87533 4.89030 4.92676 4.97735 5.07040 5.08237 5.15223 5.18280 5.22037 5.39412 5.44132 5.48879 5.49419 5.63740 5.68391 5.75936 5.85836 6.13488 6.24009 6.52411 6.71787 7.15229 7.27025 7.82256 8.47287 9.28050 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.003204 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.785169 B = 8736.562438 C =10175.582528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.022 4.022 3 H 0.122 0.878 4 C 0.522 3.478 5 O -0.580 6.580 6 N -0.605 5.605 7 C 0.117 3.883 8 C -0.106 4.106 9 C -0.056 4.056 10 C -0.119 4.119 11 C 0.190 3.810 12 N -0.623 5.623 13 C -0.241 4.241 14 H 0.075 0.925 15 C -0.060 4.060 16 N -0.947 5.947 17 Si 0.973 3.027 18 H -0.284 1.284 19 H -0.295 1.295 20 H -0.274 1.274 21 C 0.141 3.859 22 C -0.100 4.100 23 C 0.113 3.887 24 C -0.242 4.242 25 C 0.051 3.949 26 N -0.335 5.335 27 N -0.378 5.378 28 C 0.092 3.908 29 C 0.075 3.925 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.016 0.984 40 H -0.002 1.002 41 H 0.246 0.754 42 H 0.030 0.970 43 H 0.015 0.985 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.109 0.891 47 H 0.083 0.917 48 H 0.174 0.826 49 H 0.091 0.909 50 H 0.112 0.888 51 H 0.084 0.916 52 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.663 -2.312 -9.726 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.045 4.045 3 H 0.139 0.861 4 C 0.312 3.688 5 O -0.460 6.460 6 N -0.337 5.337 7 C -0.006 4.006 8 C -0.145 4.145 9 C -0.057 4.057 10 C -0.157 4.157 11 C 0.065 3.935 12 N -0.349 5.349 13 C -0.371 4.371 14 H 0.093 0.907 15 C -0.254 4.254 16 N -0.596 5.596 17 Si 0.801 3.199 18 H -0.210 1.210 19 H -0.222 1.222 20 H -0.200 1.200 21 C 0.016 3.984 22 C -0.138 4.138 23 C -0.009 4.009 24 C -0.254 4.254 25 C -0.134 4.134 26 N -0.158 5.158 27 N -0.159 5.159 28 C -0.048 4.048 29 C -0.072 4.072 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.034 0.966 40 H 0.016 0.984 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.033 0.967 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.127 0.873 47 H 0.101 0.899 48 H 0.192 0.808 49 H 0.110 0.890 50 H 0.130 0.870 51 H 0.103 0.897 52 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -17.470 -3.534 -10.552 20.713 hybrid contribution 1.429 0.578 0.577 1.646 sum -16.040 -2.955 -9.975 19.119 Atomic orbital electron populations 1.21623 0.91648 1.02423 1.02751 1.19584 0.97761 0.99589 0.87526 0.86052 1.21094 0.79659 0.83274 0.84802 1.90626 1.58728 1.29588 1.67099 1.48200 1.23627 1.38059 1.23816 1.21578 0.94443 0.98866 0.85695 1.21623 0.94411 0.96756 1.01691 1.20908 0.93529 0.95452 0.95841 1.22792 0.97287 0.97488 0.98178 1.20893 0.88263 0.90655 0.93647 1.44774 1.12828 1.10514 1.66767 1.19388 0.90145 0.97639 1.29893 0.90713 1.25525 1.02097 0.96150 1.01589 1.70172 1.37697 1.03926 1.47809 0.85170 0.79935 0.77352 0.77414 1.21038 1.22160 1.19966 1.21639 0.90759 0.88661 0.97333 1.21465 0.95981 1.00653 0.95750 1.21948 0.89398 0.89297 1.00259 1.19616 1.10417 0.95129 1.00249 1.23828 0.98975 0.96904 0.93701 1.77329 1.14713 1.07717 1.15995 1.48785 1.39473 1.07606 1.20073 1.22192 0.94973 1.04913 0.82688 1.22897 0.98022 0.96831 0.89497 0.90368 0.93151 0.91775 0.90009 0.90047 0.92681 0.90145 0.91604 0.89602 0.96550 0.98418 0.94463 0.95134 0.96716 0.91800 0.92789 0.87305 0.89883 0.80849 0.89031 0.86971 0.89700 0.77158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.80 71.98 0.63 -1.47 16 2 C -0.02 -0.40 2.29 -12.28 -0.03 -0.43 16 3 H 0.12 1.48 6.14 -2.39 -0.01 1.46 16 4 C 0.52 12.77 6.54 87.66 0.57 13.34 16 5 O -0.58 -18.20 15.57 -3.02 -0.05 -18.25 16 6 N -0.61 -13.96 2.96 -818.28 -2.42 -16.38 16 7 C 0.12 2.80 6.17 86.41 0.53 3.33 16 8 C -0.11 -2.81 4.84 30.41 0.15 -2.67 16 9 C -0.06 -1.75 0.55 -51.92 -0.03 -1.78 16 10 C -0.12 -3.98 4.92 31.56 0.16 -3.82 16 11 C 0.19 8.95 5.00 86.76 0.43 9.38 16 12 N -0.62 -31.15 3.39 -692.77 -2.35 -33.50 16 13 C -0.24 -13.38 10.28 84.03 0.86 -12.52 16 14 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 15 C -0.06 -3.37 5.49 84.86 0.47 -2.91 16 16 N -0.95 -55.52 10.31 21.65 0.22 -55.30 16 17 Si 0.97 45.05 29.55 68.60 2.03 47.08 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 C 0.14 5.69 6.15 86.56 0.53 6.22 16 22 C -0.10 -2.79 4.85 30.41 0.15 -2.64 16 23 C 0.11 2.32 5.85 86.41 0.51 2.82 16 24 C -0.24 -4.78 4.68 -20.15 -0.09 -4.88 16 25 C 0.05 1.26 11.62 85.23 0.99 2.25 16 26 N -0.34 -8.66 12.58 -57.02 -0.72 -9.38 16 27 N -0.38 -7.24 4.01 -369.56 -1.48 -8.73 16 28 C 0.09 1.02 11.47 127.77 1.47 2.48 16 29 C 0.08 1.21 11.18 83.54 0.93 2.15 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.03 7.68 -2.39 -0.02 1.01 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 2.12 6.99 -2.39 -0.02 2.10 16 34 H 0.08 1.76 7.62 -2.39 -0.02 1.74 16 35 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.08 2.04 8.10 -2.38 -0.02 2.02 16 37 H 0.07 2.09 7.98 -2.38 -0.02 2.07 16 38 H 0.09 2.43 6.17 -2.39 -0.01 2.42 16 39 H 0.02 0.85 7.39 -2.39 -0.02 0.83 16 40 H 0.00 -0.13 7.50 -2.38 -0.02 -0.15 16 41 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 42 H 0.03 1.24 8.02 -2.39 -0.02 1.22 16 43 H 0.02 0.61 7.99 -2.39 -0.02 0.59 16 44 H 0.06 2.11 7.82 -2.39 -0.02 2.09 16 45 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.11 1.63 5.30 -2.39 -0.01 1.62 16 47 H 0.08 1.61 6.55 -2.38 -0.02 1.59 16 48 H 0.17 4.30 8.06 -2.91 -0.02 4.28 16 49 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 50 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.21 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -75.33 400.86 4.37 -70.96 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.90 Total: 14.60 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 8.23 Total: 8.88 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -6.74 Total: -123.28 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.05 Total: -18.25 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -75.33 4.37 -70.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035260459.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.606 kcal (2) G-P(sol) polarization free energy of solvation -75.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds