Wall clock time and date at job start Wed Apr 1 2020 05:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50697 * 109.47463 * 295.00146 * 4 2 1 6 6 O 1.21287 * 119.99710 * 359.97438 * 5 4 2 7 7 N 1.34781 * 120.00631 * 179.97438 * 5 4 2 8 8 C 1.46883 * 120.45946 * 359.72646 * 7 5 4 9 9 C 1.52859 * 109.01456 * 235.48212 * 8 7 5 10 10 C 1.52669 * 109.17727 * 307.82257 * 9 8 7 11 11 C 1.53482 * 113.62142 * 188.99325 * 10 9 8 12 12 N 1.47680 * 85.98643 * 137.70614 * 11 10 9 13 13 C 1.36930 * 134.45674 * 155.71532 * 12 11 10 14 14 H 1.08001 * 119.99788 * 179.97438 * 13 12 11 15 15 C 1.38812 * 120.00267 * 359.95134 * 13 12 11 16 16 N 1.31625 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00174 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47221 * 60.00159 * 17 15 13 19 19 H 1.48499 * 109.47127 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47365 * 300.00057 * 17 15 13 21 21 C 1.47665 * 91.08377 * 335.68433 * 12 11 10 22 22 C 1.52667 * 113.18516 * 57.46200 * 10 9 8 23 23 C 1.46875 * 120.46698 * 179.97438 * 7 5 4 24 24 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 25 25 C 1.39870 * 126.03589 * 300.02424 * 24 2 1 26 26 N 1.30838 * 108.20158 * 179.97438 * 25 24 2 27 27 N 1.40090 * 108.20366 * 359.97438 * 26 25 24 28 28 C 1.46495 * 126.03402 * 180.02562 * 27 26 25 29 29 C 1.34948 * 107.92229 * 359.75961 * 27 26 25 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 34 34 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 35 35 H 1.09001 * 109.59281 * 355.31059 * 8 7 5 36 36 H 1.09004 * 109.58856 * 115.74483 * 8 7 5 37 37 H 1.08999 * 109.61056 * 187.83916 * 9 8 7 38 38 H 1.08999 * 109.38458 * 67.66694 * 9 8 7 39 39 H 1.08995 * 113.79287 * 251.96880 * 11 10 9 40 40 H 1.08999 * 113.79380 * 23.43882 * 11 10 9 41 41 H 0.96993 * 120.00004 * 179.97438 * 16 15 13 42 42 H 1.09004 * 113.78601 * 270.04736 * 21 12 11 43 43 H 1.08992 * 113.79172 * 138.58257 * 21 12 11 44 44 H 1.09008 * 109.53515 * 182.51953 * 22 10 9 45 45 H 1.08995 * 109.53724 * 62.30005 * 22 10 9 46 46 H 1.08998 * 109.59473 * 244.25681 * 23 7 5 47 47 H 1.09006 * 109.58930 * 4.69704 * 23 7 5 48 48 H 1.08001 * 125.90185 * 359.97438 * 25 24 2 49 49 H 1.08998 * 109.47272 * 89.97575 * 28 27 26 50 50 H 1.09001 * 109.46944 * 209.97416 * 28 27 26 51 51 H 1.09006 * 109.47207 * 329.97270 * 28 27 26 52 52 H 1.08005 * 126.11774 * 180.23647 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6414 0.0569 2.4765 6 8 1.0117 1.0873 2.3633 7 7 1.9846 -0.3920 3.7002 8 6 2.7419 -1.6417 3.8494 9 6 1.9720 -2.5830 4.7756 10 6 1.6294 -1.8457 6.0678 11 6 1.0486 -2.7551 7.1593 12 7 1.9154 -2.0110 8.0952 13 6 1.8813 -1.7607 9.4410 14 1 2.6600 -1.1699 9.9002 15 6 0.8456 -2.2658 10.2150 16 7 -0.1035 -2.9859 9.6553 17 14 0.7995 -1.9249 12.0510 18 1 0.7371 -0.4591 12.2809 19 1 -0.3987 -2.5709 12.6445 20 1 2.0237 -2.4741 12.6874 21 6 2.8340 -1.6459 6.9982 22 6 0.8187 -0.5729 5.8368 23 6 1.6019 0.3586 4.9032 24 6 2.0324 -0.7103 -1.2306 25 6 1.7731 -2.0406 -1.5763 26 7 2.3769 -2.2936 -2.7091 27 7 3.0399 -1.1303 -3.1209 28 6 3.8385 -0.9792 -4.3398 29 6 2.8082 -0.1719 -2.1996 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6055 -1.7198 1.2950 34 1 3.1264 -0.7995 1.2055 35 1 2.8665 -2.1123 2.8742 36 1 3.7194 -1.4272 4.2816 37 1 2.5861 -3.4539 5.0047 38 1 1.0533 -2.9028 4.2839 39 1 -0.0169 -2.6066 7.3343 40 1 1.3207 -3.8047 7.0479 41 1 -0.8270 -3.3392 10.1962 42 1 3.6367 -2.3659 6.8390 43 1 3.1873 -0.6159 7.0451 44 1 0.6463 -0.0725 6.7898 45 1 -0.1374 -0.8276 5.3796 46 1 2.4974 0.7166 5.4110 47 1 0.9755 1.2052 4.6219 48 1 1.1774 -2.7384 -1.0065 49 1 3.1971 -0.6453 -5.1553 50 1 4.6240 -0.2427 -4.1705 51 1 4.2887 -1.9371 -4.6003 52 1 3.1784 0.8423 -2.2289 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035757880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:24 Heat of formation + Delta-G solvation = 94.226565 kcal Electronic energy + Delta-G solvation = -30732.245643 eV Core-core repulsion = 26735.203496 eV Total energy + Delta-G solvation = -3997.042147 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.52788 -40.31278 -38.78931 -35.94975 -35.25775 -33.04702 -32.47672 -31.17670 -30.51502 -29.82317 -27.92650 -26.80018 -26.63035 -25.00098 -23.61396 -23.33617 -22.43450 -21.40139 -21.13650 -20.01209 -19.08335 -17.68374 -17.04653 -16.69760 -16.47922 -15.86141 -15.71713 -15.32864 -14.84905 -14.68736 -14.62562 -14.40461 -14.06443 -13.75684 -13.54180 -13.49960 -13.24674 -13.14574 -12.85465 -12.77887 -12.52289 -12.33340 -12.31141 -12.04873 -11.65311 -11.56587 -11.24790 -11.14161 -11.04819 -10.98960 -10.82536 -10.78216 -10.58583 -10.36121 -10.10797 -9.69157 -9.67695 -9.64893 -9.44289 -9.30588 -8.75433 -8.61224 -8.35155 -6.82850 -5.73208 -3.04844 1.61535 2.23553 2.54239 2.75710 3.17572 3.41116 3.45370 3.46524 4.17190 4.48429 4.52922 4.56542 4.72226 4.74564 4.88219 4.94741 4.98898 5.03744 5.09285 5.16978 5.26601 5.36065 5.40335 5.42255 5.46205 5.52355 5.54287 5.59701 5.61759 5.74123 5.82842 5.92003 5.95699 6.01304 6.05045 6.22759 6.23849 6.31235 6.33268 6.34821 6.45093 6.51173 6.66693 6.68661 6.71268 6.84824 6.92503 7.27011 7.41341 7.43030 7.58304 7.61987 8.02497 8.32197 9.08560 9.74722 10.65288 11.43702 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.001951 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.151471 B =14351.327012 C =14630.225632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.006 3.994 3 H 0.080 0.920 4 C -0.131 4.131 5 C 0.513 3.487 6 O -0.547 6.547 7 N -0.606 5.606 8 C 0.109 3.891 9 C -0.119 4.119 10 C -0.108 4.108 11 C 0.173 3.827 12 N -0.609 5.609 13 C -0.221 4.221 14 H 0.077 0.923 15 C -0.008 4.008 16 N -0.921 5.921 17 Si 0.910 3.090 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.286 1.286 21 C 0.126 3.874 22 C -0.096 4.096 23 C 0.113 3.887 24 C -0.226 4.226 25 C 0.056 3.944 26 N -0.299 5.299 27 N -0.380 5.380 28 C 0.103 3.897 29 C 0.055 3.945 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.024 0.976 41 H 0.253 0.747 42 H 0.030 0.970 43 H 0.040 0.960 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.181 0.819 49 H 0.072 0.928 50 H 0.086 0.914 51 H 0.088 0.912 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.318 4.349 -26.583 27.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.014 4.014 3 H 0.099 0.901 4 C -0.171 4.171 5 C 0.302 3.698 6 O -0.425 6.425 7 N -0.339 5.339 8 C -0.014 4.014 9 C -0.158 4.158 10 C -0.109 4.109 11 C 0.048 3.952 12 N -0.335 5.335 13 C -0.349 4.349 14 H 0.095 0.905 15 C -0.205 4.205 16 N -0.569 5.569 17 Si 0.740 3.260 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.213 1.213 21 C 0.000 4.000 22 C -0.134 4.134 23 C -0.009 4.009 24 C -0.237 4.237 25 C -0.130 4.130 26 N -0.121 5.121 27 N -0.163 5.163 28 C -0.039 4.039 29 C -0.091 4.091 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.104 0.896 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.106 0.894 48 H 0.198 0.802 49 H 0.091 0.909 50 H 0.105 0.895 51 H 0.106 0.894 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.193 4.017 -27.341 28.555 hybrid contribution 0.015 0.414 1.756 1.804 sum 7.209 4.431 -25.585 26.948 Atomic orbital electron populations 1.21927 0.94115 1.01560 1.02828 1.19125 0.96039 0.98046 0.88173 0.90124 1.21754 1.02671 1.00293 0.92365 1.20650 0.79031 0.85621 0.84488 1.90638 1.40522 1.25062 1.86275 1.48156 1.55210 1.24463 1.06050 1.21682 0.94996 0.84380 1.00310 1.21749 1.00284 0.97778 0.96008 1.22375 0.98507 0.96986 0.93046 1.22234 0.97411 0.92175 0.83414 1.45950 1.24830 1.59640 1.03075 1.18956 1.07038 1.27269 0.81646 0.90512 1.24756 0.97539 1.00186 0.97971 1.69805 1.13479 1.39155 1.34429 0.86240 0.76915 0.77733 0.85102 1.21133 1.21613 1.21310 1.22588 0.92494 0.97404 0.87497 1.21485 0.97428 0.94931 0.99545 1.21679 0.99659 0.95016 0.84550 1.20111 1.07878 0.95258 1.00472 1.23767 0.99128 0.96214 0.93933 1.77364 1.13471 1.06022 1.15205 1.48441 1.40380 1.08292 1.19161 1.21829 0.94378 1.04042 0.83642 1.22348 1.00413 0.95578 0.90773 0.90365 0.93289 0.93192 0.88903 0.89173 0.90214 0.91323 0.90727 0.91782 0.91026 0.95815 0.93672 0.95225 0.94213 0.89612 0.92169 0.91668 0.89417 0.80171 0.90899 0.89540 0.89354 0.81066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.82 37.16 0.33 -1.18 16 2 C 0.01 0.06 2.40 -91.77 -0.22 -0.16 16 3 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 4 C -0.13 -1.22 3.37 -27.89 -0.09 -1.32 16 5 C 0.51 6.57 7.41 -10.98 -0.08 6.49 16 6 O -0.55 -8.62 13.36 5.55 0.07 -8.54 16 7 N -0.61 -7.82 2.95 -172.93 -0.51 -8.33 16 8 C 0.11 1.21 6.19 -3.91 -0.02 1.19 16 9 C -0.12 -1.60 5.24 -26.97 -0.14 -1.74 16 10 C -0.11 -1.88 0.77 -154.43 -0.12 -2.00 16 11 C 0.17 3.95 6.64 -3.15 -0.02 3.93 16 12 N -0.61 -15.23 3.53 -179.75 -0.64 -15.87 16 13 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 14 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 15 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 16 N -0.92 -27.24 11.39 55.49 0.63 -26.60 16 17 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 C 0.13 2.46 7.72 -3.15 -0.02 2.44 16 22 C -0.10 -1.62 5.22 -26.71 -0.14 -1.76 16 23 C 0.11 1.65 6.30 -3.64 -0.02 1.63 16 24 C -0.23 -2.02 4.80 -105.05 -0.50 -2.53 16 25 C 0.06 0.53 11.54 -17.36 -0.20 0.33 16 26 N -0.30 -3.22 12.58 30.62 0.39 -2.84 16 27 N -0.38 -3.20 4.01 -68.17 -0.27 -3.48 16 28 C 0.10 0.44 11.47 59.84 0.69 1.12 16 29 C 0.05 0.43 11.38 -17.23 -0.20 0.23 16 30 H 0.08 0.98 5.95 -51.93 -0.31 0.67 16 31 H 0.05 0.46 8.02 -51.93 -0.42 0.04 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.77 7.71 -51.93 -0.40 0.37 16 34 H 0.09 0.74 7.91 -51.93 -0.41 0.33 16 35 H 0.08 0.68 5.89 -51.93 -0.31 0.37 16 36 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.07 0.97 8.12 -51.93 -0.42 0.54 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 40 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 41 H 0.25 7.30 8.31 -40.82 -0.34 6.97 16 42 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 43 H 0.04 0.75 7.41 -51.93 -0.38 0.37 16 44 H 0.09 1.68 8.02 -51.92 -0.42 1.27 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.07 0.94 7.49 -51.93 -0.39 0.55 16 47 H 0.09 1.34 6.98 -51.93 -0.36 0.98 16 48 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 49 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 51 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 52 H 0.17 0.86 8.06 -52.48 -0.42 0.43 16 LS Contribution 408.04 15.07 6.15 6.15 Total: -1.00 -34.42 408.04 -9.02 -43.43 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.78 Total: -1.11 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -1.03 Total: 0.02 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.40 Total: -57.11 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.07 Total: -8.54 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.42 -9.02 -43.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035757880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.660 kcal (2) G-P(sol) polarization free energy of solvation -34.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds