Wall clock time and date at job start Wed Apr 1 2020 05:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50697 * 109.47463 * 295.00146 * 4 2 1 6 6 O 1.21287 * 119.99710 * 359.97438 * 5 4 2 7 7 N 1.34781 * 120.00631 * 179.97438 * 5 4 2 8 8 C 1.46883 * 120.45946 * 359.72646 * 7 5 4 9 9 C 1.52859 * 109.01456 * 235.48212 * 8 7 5 10 10 C 1.52669 * 109.17727 * 307.82257 * 9 8 7 11 11 C 1.53482 * 113.62142 * 188.99325 * 10 9 8 12 12 N 1.47680 * 85.98643 * 137.70614 * 11 10 9 13 13 C 1.36930 * 134.45674 * 155.71532 * 12 11 10 14 14 H 1.08001 * 119.99788 * 179.97438 * 13 12 11 15 15 C 1.38812 * 120.00267 * 359.95134 * 13 12 11 16 16 N 1.31625 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00174 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47221 * 60.00159 * 17 15 13 19 19 H 1.48499 * 109.47127 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47365 * 300.00057 * 17 15 13 21 21 C 1.47665 * 91.08377 * 335.68433 * 12 11 10 22 22 C 1.52667 * 113.18516 * 57.46200 * 10 9 8 23 23 C 1.46875 * 120.46698 * 179.97438 * 7 5 4 24 24 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 25 25 C 1.39870 * 126.03589 * 300.02424 * 24 2 1 26 26 N 1.30838 * 108.20158 * 179.97438 * 25 24 2 27 27 N 1.40090 * 108.20366 * 359.97438 * 26 25 24 28 28 C 1.46495 * 126.03402 * 180.02562 * 27 26 25 29 29 C 1.34948 * 107.92229 * 359.75961 * 27 26 25 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 34 34 H 1.09006 * 109.47717 * 174.99599 * 4 2 1 35 35 H 1.09001 * 109.59281 * 355.31059 * 8 7 5 36 36 H 1.09004 * 109.58856 * 115.74483 * 8 7 5 37 37 H 1.08999 * 109.61056 * 187.83916 * 9 8 7 38 38 H 1.08999 * 109.38458 * 67.66694 * 9 8 7 39 39 H 1.08995 * 113.79287 * 251.96880 * 11 10 9 40 40 H 1.08999 * 113.79380 * 23.43882 * 11 10 9 41 41 H 0.96993 * 120.00004 * 179.97438 * 16 15 13 42 42 H 1.09004 * 113.78601 * 270.04736 * 21 12 11 43 43 H 1.08992 * 113.79172 * 138.58257 * 21 12 11 44 44 H 1.09008 * 109.53515 * 182.51953 * 22 10 9 45 45 H 1.08995 * 109.53724 * 62.30005 * 22 10 9 46 46 H 1.08998 * 109.59473 * 244.25681 * 23 7 5 47 47 H 1.09006 * 109.58930 * 4.69704 * 23 7 5 48 48 H 1.08001 * 125.90185 * 359.97438 * 25 24 2 49 49 H 1.08998 * 109.47272 * 89.97575 * 28 27 26 50 50 H 1.09001 * 109.46944 * 209.97416 * 28 27 26 51 51 H 1.09006 * 109.47207 * 329.97270 * 28 27 26 52 52 H 1.08005 * 126.11774 * 180.23647 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6414 0.0569 2.4765 6 8 1.0117 1.0873 2.3633 7 7 1.9846 -0.3920 3.7002 8 6 2.7419 -1.6417 3.8494 9 6 1.9720 -2.5830 4.7756 10 6 1.6294 -1.8457 6.0678 11 6 1.0486 -2.7551 7.1593 12 7 1.9154 -2.0110 8.0952 13 6 1.8813 -1.7607 9.4410 14 1 2.6600 -1.1699 9.9002 15 6 0.8456 -2.2658 10.2150 16 7 -0.1035 -2.9859 9.6553 17 14 0.7995 -1.9249 12.0510 18 1 0.7371 -0.4591 12.2809 19 1 -0.3987 -2.5709 12.6445 20 1 2.0237 -2.4741 12.6874 21 6 2.8340 -1.6459 6.9982 22 6 0.8187 -0.5729 5.8368 23 6 1.6019 0.3586 4.9032 24 6 2.0324 -0.7103 -1.2306 25 6 1.7731 -2.0406 -1.5763 26 7 2.3769 -2.2936 -2.7091 27 7 3.0399 -1.1303 -3.1209 28 6 3.8385 -0.9792 -4.3398 29 6 2.8082 -0.1719 -2.1996 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6055 -1.7198 1.2950 34 1 3.1264 -0.7995 1.2055 35 1 2.8665 -2.1123 2.8742 36 1 3.7194 -1.4272 4.2816 37 1 2.5861 -3.4539 5.0047 38 1 1.0533 -2.9028 4.2839 39 1 -0.0169 -2.6066 7.3343 40 1 1.3207 -3.8047 7.0479 41 1 -0.8270 -3.3392 10.1962 42 1 3.6367 -2.3659 6.8390 43 1 3.1873 -0.6159 7.0451 44 1 0.6463 -0.0725 6.7898 45 1 -0.1374 -0.8276 5.3796 46 1 2.4974 0.7166 5.4110 47 1 0.9755 1.2052 4.6219 48 1 1.1774 -2.7384 -1.0065 49 1 3.1971 -0.6453 -5.1553 50 1 4.6240 -0.2427 -4.1705 51 1 4.2887 -1.9371 -4.6003 52 1 3.1784 0.8423 -2.2289 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035757880.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:23 Heat of formation + Delta-G solvation = 73.661078 kcal Electronic energy + Delta-G solvation = -30733.137430 eV Core-core repulsion = 26735.203496 eV Total energy + Delta-G solvation = -3997.933934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.14601 -41.49046 -40.12718 -37.14679 -36.10115 -34.38576 -33.60056 -32.35452 -31.98601 -30.49514 -29.04750 -28.19121 -27.29549 -26.68974 -24.99766 -24.41732 -23.41362 -22.73353 -21.92473 -20.86619 -20.04581 -18.81589 -18.67441 -17.99419 -17.27684 -16.86985 -16.80287 -16.37049 -16.19672 -16.07282 -15.61640 -15.36347 -15.20972 -15.07184 -14.85475 -14.26486 -14.15420 -13.92669 -13.83395 -13.65300 -13.61598 -13.50285 -13.29148 -13.09444 -13.03530 -12.87542 -12.77795 -12.57381 -12.33265 -12.22218 -12.09004 -11.98349 -11.83514 -11.62922 -11.48184 -11.26393 -11.09225 -10.98384 -10.77964 -10.51121 -10.29194 -9.47635 -9.22205 -8.84960 -7.87046 -5.18814 1.03611 1.44616 1.47641 1.53667 1.76124 1.79543 1.88990 2.19505 2.49383 3.33478 3.45703 3.58508 3.67415 3.78608 3.98997 4.03382 4.07964 4.17370 4.25883 4.30888 4.36080 4.40828 4.48734 4.49479 4.52553 4.69180 4.74326 4.75011 4.77068 4.78817 4.84417 4.85595 4.89510 4.93045 4.94578 5.01025 5.09101 5.13509 5.19435 5.25529 5.29499 5.32658 5.40255 5.50137 5.55604 5.62667 5.65248 5.80232 5.82222 5.99774 6.21888 6.59850 6.82437 6.96273 7.33545 7.65510 8.63063 9.29527 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.001951 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.151471 B =14351.327012 C =14630.225632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.016 3.984 3 H 0.073 0.927 4 C -0.123 4.123 5 C 0.511 3.489 6 O -0.580 6.580 7 N -0.608 5.608 8 C 0.112 3.888 9 C -0.114 4.114 10 C -0.081 4.081 11 C 0.167 3.833 12 N -0.640 5.640 13 C -0.230 4.230 14 H 0.080 0.920 15 C -0.070 4.070 16 N -0.954 5.954 17 Si 0.974 3.026 18 H -0.278 1.278 19 H -0.296 1.296 20 H -0.278 1.278 21 C 0.130 3.870 22 C -0.089 4.089 23 C 0.125 3.875 24 C -0.238 4.238 25 C 0.049 3.951 26 N -0.338 5.338 27 N -0.383 5.383 28 C 0.094 3.906 29 C 0.059 3.941 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.032 0.968 40 H 0.016 0.984 41 H 0.246 0.754 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.193 0.807 49 H 0.082 0.918 50 H 0.113 0.887 51 H 0.088 0.912 52 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.733 4.603 -28.697 30.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.005 4.005 3 H 0.092 0.908 4 C -0.162 4.162 5 C 0.302 3.698 6 O -0.461 6.461 7 N -0.340 5.340 8 C -0.009 4.009 9 C -0.153 4.153 10 C -0.082 4.082 11 C 0.042 3.958 12 N -0.366 5.366 13 C -0.358 4.358 14 H 0.098 0.902 15 C -0.262 4.262 16 N -0.604 5.604 17 Si 0.803 3.197 18 H -0.204 1.204 19 H -0.222 1.222 20 H -0.204 1.204 21 C 0.005 3.995 22 C -0.127 4.127 23 C 0.002 3.998 24 C -0.249 4.249 25 C -0.136 4.136 26 N -0.160 5.160 27 N -0.166 5.166 28 C -0.047 4.047 29 C -0.088 4.088 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.034 0.966 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.209 0.791 49 H 0.100 0.900 50 H 0.132 0.868 51 H 0.106 0.894 52 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 9.656 4.266 -29.496 31.328 hybrid contribution -0.725 0.381 2.343 2.482 sum 8.930 4.647 -27.153 28.959 Atomic orbital electron populations 1.21866 0.95163 1.01585 1.01468 1.18970 0.95054 0.97789 0.88638 0.90847 1.21784 1.04031 1.00270 0.90155 1.21292 0.78062 0.85339 0.85136 1.90637 1.41928 1.26785 1.86726 1.48224 1.55364 1.24972 1.05459 1.21838 0.94448 0.82925 1.01728 1.21721 1.01315 0.98251 0.93967 1.22087 0.96376 0.95851 0.93880 1.22186 0.95220 0.92671 0.85759 1.46339 1.27017 1.60112 1.03159 1.19359 1.06679 1.26390 0.83389 0.90181 1.25573 0.97594 1.00857 1.02212 1.70007 1.14096 1.40735 1.35521 0.85211 0.76682 0.77691 0.80122 1.20374 1.22228 1.20408 1.22773 0.92913 0.98151 0.85657 1.21351 0.97728 0.95145 0.98499 1.21391 0.99271 0.94200 0.84949 1.20040 1.08958 0.95163 1.00752 1.24025 0.99001 0.96757 0.93809 1.77309 1.14852 1.07736 1.16100 1.48768 1.40056 1.07729 1.20001 1.22144 0.94887 1.04972 0.82648 1.22826 0.99409 0.96494 0.90030 0.92937 0.92567 0.93242 0.87171 0.87002 0.86461 0.90090 0.89457 0.91288 0.94982 0.96642 0.94494 0.93247 0.93340 0.93097 0.92802 0.91045 0.90384 0.79053 0.89968 0.86841 0.89368 0.78325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.82 71.98 0.64 -2.15 16 2 C 0.02 0.26 2.40 -11.54 -0.03 0.23 16 3 H 0.07 1.33 7.92 -2.39 -0.02 1.31 16 4 C -0.12 -1.88 3.37 29.84 0.10 -1.78 16 5 C 0.51 11.92 7.41 87.66 0.65 12.57 16 6 O -0.58 -17.81 13.36 -3.05 -0.04 -17.85 16 7 N -0.61 -14.14 2.95 -819.40 -2.41 -16.56 16 8 C 0.11 2.03 6.19 86.26 0.53 2.56 16 9 C -0.11 -2.74 5.24 30.44 0.16 -2.58 16 10 C -0.08 -2.77 0.77 -52.04 -0.04 -2.81 16 11 C 0.17 7.84 6.64 86.31 0.57 8.42 16 12 N -0.64 -32.48 3.53 -722.61 -2.55 -35.03 16 13 C -0.23 -12.97 10.70 84.03 0.90 -12.07 16 14 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 15 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 16 N -0.95 -58.57 11.39 21.65 0.25 -58.32 16 17 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 C 0.13 4.89 7.72 86.32 0.67 5.56 16 22 C -0.09 -3.05 5.22 30.61 0.16 -2.89 16 23 C 0.12 3.54 6.30 86.44 0.54 4.09 16 24 C -0.24 -3.65 4.80 -20.14 -0.10 -3.74 16 25 C 0.05 0.84 11.54 85.24 0.98 1.82 16 26 N -0.34 -6.69 12.58 -57.02 -0.72 -7.41 16 27 N -0.38 -5.53 4.01 -369.57 -1.48 -7.01 16 28 C 0.09 0.56 11.47 127.77 1.47 2.02 16 29 C 0.06 0.76 11.38 83.54 0.95 1.71 16 30 H 0.05 1.30 5.95 -2.39 -0.01 1.29 16 31 H 0.06 0.98 8.02 -2.39 -0.02 0.96 16 32 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.11 1.36 7.71 -2.39 -0.02 1.34 16 34 H 0.11 1.30 7.91 -2.38 -0.02 1.28 16 35 H 0.12 1.34 5.89 -2.39 -0.01 1.32 16 36 H 0.08 1.35 8.08 -2.38 -0.02 1.33 16 37 H 0.09 1.95 8.12 -2.39 -0.02 1.93 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.03 1.74 7.12 -2.39 -0.02 1.72 16 40 H 0.02 0.75 8.09 -2.39 -0.02 0.73 16 41 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.05 1.72 8.07 -2.38 -0.02 1.70 16 43 H 0.05 1.75 7.41 -2.39 -0.02 1.73 16 44 H 0.05 2.09 8.02 -2.38 -0.02 2.07 16 45 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.07 1.95 7.49 -2.39 -0.02 1.93 16 47 H 0.08 2.39 6.98 -2.38 -0.02 2.38 16 48 H 0.19 2.49 8.06 -2.91 -0.02 2.46 16 49 H 0.08 0.34 8.14 -2.39 -0.02 0.33 16 50 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 51 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 52 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -78.18 408.04 4.58 -73.60 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.89 Total: 12.63 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 8.62 Total: 7.40 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -6.92 Total: -124.34 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.04 Total: -17.85 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -78.18 4.58 -73.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035757880.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.259 kcal (2) G-P(sol) polarization free energy of solvation -78.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds