Wall clock time and date at job start Wed Apr 1 2020 04:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47014 * 2 1 4 4 C 1.53000 * 109.47046 * 119.99888 * 2 1 3 5 5 C 1.50694 * 109.47081 * 294.99882 * 4 2 1 6 6 C 1.39873 * 126.03915 * 90.02793 * 5 4 2 7 7 N 1.30836 * 108.20617 * 179.97438 * 6 5 4 8 8 N 1.40083 * 108.20278 * 0.02562 * 7 6 5 9 9 C 1.46504 * 126.03932 * 179.97438 * 8 7 6 10 10 C 1.34952 * 107.92833 * 359.75134 * 8 7 6 11 11 C 1.50697 * 109.47132 * 240.00368 * 2 1 3 12 12 O 1.21282 * 119.99875 * 254.82701 * 11 2 1 13 13 N 1.34773 * 120.00608 * 74.55025 * 11 2 1 14 14 C 1.46876 * 120.46944 * 174.32218 * 13 11 2 15 15 C 1.52862 * 109.01994 * 235.48824 * 14 13 11 16 16 C 1.52666 * 109.17533 * 307.81974 * 15 14 13 17 17 C 1.53487 * 113.62145 * 188.99476 * 16 15 14 18 18 N 1.47674 * 85.98553 * 137.70641 * 17 16 15 19 19 C 1.36934 * 134.45333 * 155.71233 * 18 17 16 20 20 H 1.08005 * 120.00025 * 187.27677 * 19 18 17 21 21 C 1.38817 * 120.00266 * 7.28477 * 19 18 17 22 22 N 1.31621 * 119.99667 * 354.86991 * 21 19 18 23 23 Si 1.86795 * 119.99911 * 174.87140 * 21 19 18 24 24 H 1.48499 * 109.46957 * 94.98023 * 23 21 19 25 25 H 1.48506 * 109.46940 * 214.97653 * 23 21 19 26 26 H 1.48497 * 109.47297 * 334.98125 * 23 21 19 27 27 C 1.47666 * 91.08635 * 335.68027 * 18 17 16 28 28 C 1.52675 * 113.18558 * 57.46110 * 16 15 14 29 29 C 1.46883 * 120.46205 * 354.60009 * 13 11 2 30 30 H 1.09004 * 109.46836 * 63.72084 * 1 2 3 31 31 H 1.09001 * 109.46816 * 183.71542 * 1 2 3 32 32 H 1.08998 * 109.47132 * 303.71830 * 1 2 3 33 33 H 1.08998 * 109.47098 * 55.00370 * 4 2 1 34 34 H 1.09003 * 109.46674 * 174.99923 * 4 2 1 35 35 H 1.08008 * 125.89693 * 359.95850 * 6 5 4 36 36 H 1.09001 * 109.47183 * 89.96954 * 9 8 7 37 37 H 1.08999 * 109.47388 * 209.97076 * 9 8 7 38 38 H 1.08997 * 109.46526 * 329.97399 * 9 8 7 39 39 H 1.08000 * 126.13330 * 180.24002 * 10 8 7 40 40 H 1.09007 * 109.59001 * 355.31371 * 14 13 11 41 41 H 1.09004 * 109.58995 * 115.75014 * 14 13 11 42 42 H 1.09001 * 109.60807 * 187.83811 * 15 14 13 43 43 H 1.08998 * 109.44597 * 67.70173 * 15 14 13 44 44 H 1.09000 * 113.78619 * 251.97067 * 17 16 15 45 45 H 1.08995 * 113.78834 * 23.43610 * 17 16 15 46 46 H 0.97001 * 119.99562 * 180.02562 * 22 21 19 47 47 H 1.09001 * 113.78951 * 270.05299 * 27 18 17 48 48 H 1.08998 * 113.78974 * 138.58350 * 27 18 17 49 49 H 1.08996 * 109.52817 * 182.51881 * 28 16 15 50 50 H 1.08998 * 109.58950 * 62.33263 * 28 16 15 51 51 H 1.08993 * 109.59290 * 244.25530 * 29 13 11 52 52 H 1.08999 * 109.59172 * 4.69012 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0571 2.4765 6 6 0.4575 -0.1030 3.2040 7 7 0.4705 0.7472 4.1983 8 7 1.6647 1.4767 4.1347 9 6 2.0796 2.5334 5.0607 10 6 2.3678 1.0308 3.0726 11 6 2.0324 -0.7103 -1.2305 12 8 2.4937 -1.8283 -1.1394 13 7 1.9639 -0.1056 -2.4330 14 6 2.5617 -0.7345 -3.6180 15 6 3.5482 0.2432 -4.2566 16 6 2.8506 1.5817 -4.4854 17 6 3.6764 2.5710 -5.3192 18 7 2.4101 2.8842 -6.0114 19 6 1.9393 3.9658 -6.7067 20 1 0.9084 3.9945 -7.0276 21 6 2.7870 5.0255 -6.9993 22 7 4.0138 5.0376 -6.5228 23 14 2.1864 6.4340 -8.0691 24 1 1.6874 7.5339 -7.2051 25 1 3.3071 6.9321 -8.9066 26 1 1.0875 5.9560 -8.9460 27 6 1.8553 1.5631 -5.6540 28 6 2.2790 2.1880 -3.2061 29 6 1.2956 1.1946 -2.5756 30 1 -0.3633 0.4550 -0.9215 31 1 -0.3633 -1.0255 0.0666 32 1 -0.3633 0.5705 0.8548 33 1 1.6055 -1.7198 1.2951 34 1 3.1264 -0.7994 1.2055 35 1 -0.3314 -0.8068 2.9828 36 1 2.6420 2.0943 5.8847 37 1 2.7078 3.2520 4.5342 38 1 1.1976 3.0402 5.4522 39 1 3.3357 1.3886 2.7539 40 1 3.0884 -1.6423 -3.3235 41 1 1.7788 -0.9800 -4.3356 42 1 3.8930 -0.1559 -5.2105 43 1 4.4002 0.3851 -3.5918 44 1 4.0794 3.4032 -4.7421 45 1 4.4202 2.0942 -5.9576 46 1 4.6061 5.7782 -6.7269 47 1 2.0580 0.7869 -6.3919 48 1 0.8112 1.5943 -5.3429 49 1 1.7580 3.1155 -3.4436 50 1 3.0885 2.3938 -2.5058 51 1 0.4217 1.0879 -3.2181 52 1 0.9885 1.5573 -1.5947 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035829590.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:10 Heat of formation + Delta-G solvation = 73.964321 kcal Electronic energy + Delta-G solvation = -31047.233539 eV Core-core repulsion = 27049.312755 eV Total energy + Delta-G solvation = -3997.920784 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.16560 -41.57641 -40.18517 -37.05161 -36.16751 -34.41607 -33.80562 -32.42618 -31.77626 -31.08360 -28.69968 -28.28839 -26.85770 -26.65271 -25.41606 -24.35257 -23.76854 -22.43653 -21.90058 -21.05213 -20.16996 -18.92852 -18.66166 -18.02832 -17.33508 -16.94228 -16.82711 -16.37096 -16.17408 -16.08741 -15.63855 -15.32856 -15.17691 -14.97418 -14.93453 -14.47580 -14.15688 -14.05030 -13.76291 -13.67898 -13.52079 -13.44454 -13.25207 -13.01609 -12.95660 -12.88930 -12.81091 -12.79344 -12.60942 -12.19361 -12.11536 -12.02042 -11.92121 -11.68515 -11.52823 -11.39431 -11.09499 -10.92293 -10.81323 -10.55744 -10.29415 -9.52155 -9.22913 -8.84613 -7.89015 -5.19808 1.00980 1.45591 1.47101 1.55934 1.70408 1.75288 1.84941 2.16940 2.49298 3.31808 3.44740 3.53669 3.65362 3.77066 3.90706 3.99008 4.09156 4.14368 4.19690 4.22112 4.38174 4.39026 4.41515 4.46918 4.48766 4.58919 4.69107 4.72144 4.72915 4.75456 4.77885 4.87411 4.92080 4.93874 4.95327 4.99229 5.05678 5.12161 5.19273 5.24355 5.26908 5.31055 5.34566 5.37887 5.45110 5.59568 5.63286 5.77268 5.78921 5.97798 6.19544 6.52530 6.80146 6.95764 7.25991 7.64743 8.63061 9.28691 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013381 B = 0.002405 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.986316 B =11641.724351 C =12920.247511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 H 0.103 0.897 4 C -0.010 4.010 5 C -0.242 4.242 6 C 0.050 3.950 7 N -0.337 5.337 8 N -0.383 5.383 9 C 0.093 3.907 10 C 0.058 3.942 11 C 0.518 3.482 12 O -0.582 6.582 13 N -0.605 5.605 14 C 0.120 3.880 15 C -0.109 4.109 16 C -0.081 4.081 17 C 0.172 3.828 18 N -0.637 5.637 19 C -0.229 4.229 20 H 0.082 0.918 21 C -0.067 4.067 22 N -0.952 5.952 23 Si 0.972 3.028 24 H -0.286 1.286 25 H -0.297 1.297 26 H -0.270 1.270 27 C 0.128 3.872 28 C -0.094 4.094 29 C 0.115 3.885 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.194 0.806 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.198 0.802 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.009 0.991 46 H 0.247 0.753 47 H 0.039 0.961 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.065 0.935 51 H 0.078 0.922 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.013 -9.331 21.005 23.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.121 0.879 4 C -0.049 4.049 5 C -0.253 4.253 6 C -0.136 4.136 7 N -0.159 5.159 8 N -0.165 5.165 9 C -0.047 4.047 10 C -0.089 4.089 11 C 0.308 3.692 12 O -0.462 6.462 13 N -0.337 5.337 14 C -0.003 4.003 15 C -0.147 4.147 16 C -0.082 4.082 17 C 0.047 3.953 18 N -0.364 5.364 19 C -0.357 4.357 20 H 0.100 0.900 21 C -0.260 4.260 22 N -0.601 5.601 23 Si 0.800 3.200 24 H -0.213 1.213 25 H -0.224 1.224 26 H -0.194 1.194 27 C 0.003 3.997 28 C -0.132 4.132 29 C -0.007 4.007 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.211 0.789 36 H 0.102 0.898 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.214 0.786 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.026 0.974 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.083 0.917 51 H 0.096 0.904 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.374 -9.030 22.026 24.404 hybrid contribution 0.734 0.805 -1.876 2.169 sum -4.641 -8.226 20.150 22.253 Atomic orbital electron populations 1.21843 0.91667 1.03003 1.03233 1.21311 0.98663 1.00690 0.91193 0.87888 1.19512 1.00437 0.97038 0.87887 1.20049 0.97458 1.04903 1.02935 1.24092 0.98770 0.98156 0.92544 1.77297 1.03916 1.10559 1.24111 1.48765 1.14122 1.30251 1.23359 1.22143 1.02131 0.87733 0.92675 1.22823 0.99454 0.96974 0.89603 1.21165 0.77301 0.85719 0.84970 1.90647 1.48349 1.20719 1.86522 1.48164 1.55998 1.21472 1.08048 1.21416 0.96480 0.95809 0.86583 1.21649 0.97942 0.94051 1.01106 1.22126 0.96683 0.94763 0.94637 1.22086 0.88766 0.93616 0.90873 1.46333 1.14789 1.11680 1.63558 1.19390 0.94821 0.94708 1.26815 0.90008 1.25596 0.96163 1.01682 1.02573 1.70023 1.07589 1.32912 1.49619 0.85161 0.76872 0.79309 0.78622 1.21275 1.22413 1.19448 1.22764 0.97048 0.86507 0.93353 1.21434 0.99014 0.98040 0.94722 1.21934 0.94603 0.81382 1.02772 0.91524 0.92064 0.90619 0.91110 0.91649 0.78875 0.89776 0.87122 0.89316 0.78560 0.89764 0.90698 0.90528 0.91884 0.94864 0.97364 0.94444 0.94316 0.92598 0.91896 0.91680 0.90412 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.41 71.98 0.61 -1.50 16 2 C -0.10 -1.72 1.85 -11.54 -0.02 -1.75 16 3 H 0.10 1.66 7.17 -2.39 -0.02 1.64 16 4 C -0.01 -0.17 4.50 29.85 0.13 -0.04 16 5 C -0.24 -4.09 4.78 -20.14 -0.10 -4.19 16 6 C 0.05 0.89 10.73 85.24 0.91 1.81 16 7 N -0.34 -7.06 12.58 -57.02 -0.72 -7.77 16 8 N -0.38 -6.24 4.01 -369.55 -1.48 -7.72 16 9 C 0.09 0.77 11.47 127.77 1.47 2.23 16 10 C 0.06 0.87 11.40 83.54 0.95 1.82 16 11 C 0.52 12.54 6.92 87.66 0.61 13.14 16 12 O -0.58 -17.99 15.50 -3.04 -0.05 -18.04 16 13 N -0.60 -14.26 2.95 -819.49 -2.42 -16.68 16 14 C 0.12 2.97 6.27 86.26 0.54 3.51 16 15 C -0.11 -3.03 5.24 30.44 0.16 -2.87 16 16 C -0.08 -2.73 0.77 -52.03 -0.04 -2.77 16 17 C 0.17 7.98 6.53 86.31 0.56 8.54 16 18 N -0.64 -31.68 3.53 -722.62 -2.55 -34.23 16 19 C -0.23 -12.61 10.69 84.04 0.90 -11.71 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 21 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 22 N -0.95 -57.25 11.54 21.65 0.25 -57.00 16 23 Si 0.97 45.39 29.56 68.60 2.03 47.41 16 24 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 C 0.13 4.81 7.72 86.32 0.67 5.48 16 28 C -0.09 -2.75 5.22 30.60 0.16 -2.59 16 29 C 0.12 2.51 5.21 86.42 0.45 2.96 16 30 H 0.07 0.96 6.11 -2.38 -0.01 0.94 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 1.07 6.65 -2.39 -0.02 1.05 16 33 H 0.07 1.38 8.09 -2.39 -0.02 1.36 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.19 2.64 8.06 -2.91 -0.02 2.61 16 36 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.20 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.08 2.20 7.01 -2.38 -0.02 2.18 16 41 H 0.07 1.74 8.07 -2.39 -0.02 1.72 16 42 H 0.08 2.12 8.12 -2.39 -0.02 2.10 16 43 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.03 1.74 7.36 -2.39 -0.02 1.72 16 45 H 0.01 0.42 8.09 -2.39 -0.02 0.40 16 46 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 47 H 0.04 1.43 8.07 -2.39 -0.02 1.41 16 48 H 0.06 1.93 7.41 -2.39 -0.02 1.91 16 49 H 0.06 2.18 8.01 -2.39 -0.02 2.16 16 50 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.08 1.65 7.49 -2.39 -0.02 1.63 16 52 H 0.11 1.89 4.65 -2.39 -0.01 1.87 16 Total: -1.00 -74.88 405.77 4.39 -70.49 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.90 Total: 14.78 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 8.43 Total: 8.75 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -6.92 Total: -123.40 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.05 Total: -18.04 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -74.88 4.39 -70.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035829590.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.451 kcal (2) G-P(sol) polarization free energy of solvation -74.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds