Wall clock time and date at job start Wed Apr 1 2020 04:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47740 * 2 1 4 4 C 1.53006 * 109.46854 * 239.99840 * 2 1 3 5 5 C 1.50701 * 109.47041 * 65.00318 * 4 2 1 6 6 C 1.39876 * 126.03893 * 90.02183 * 5 4 2 7 7 N 1.30837 * 108.19880 * 179.97438 * 6 5 4 8 8 N 1.40086 * 108.20708 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.03679 * 179.97438 * 8 7 6 10 10 C 1.34951 * 107.92513 * 359.75538 * 8 7 6 11 11 C 1.50708 * 109.47276 * 120.00093 * 2 1 3 12 12 O 1.21277 * 119.99886 * 113.06013 * 11 2 1 13 13 N 1.34775 * 119.99863 * 293.06170 * 11 2 1 14 14 C 1.47047 * 120.43136 * 176.49416 * 13 11 2 15 15 C 1.53337 * 108.67484 * 124.51814 * 14 13 11 16 16 C 1.52678 * 109.16691 * 52.38092 * 15 14 13 17 17 C 1.53484 * 113.61559 * 170.82809 * 16 15 14 18 18 N 1.47663 * 85.99097 * 269.02630 * 17 16 15 19 19 C 1.36942 * 134.45843 * 155.67791 * 18 17 16 20 20 H 1.07992 * 120.00283 * 187.51525 * 19 18 17 21 21 C 1.38808 * 119.99715 * 7.51145 * 19 18 17 22 22 N 1.31626 * 120.00336 * 9.24878 * 21 19 18 23 23 Si 1.86802 * 119.99957 * 189.25127 * 21 19 18 24 24 H 1.48496 * 109.47282 * 94.85083 * 23 21 19 25 25 H 1.48507 * 109.46824 * 214.85133 * 23 21 19 26 26 H 1.48494 * 109.46934 * 334.84631 * 23 21 19 27 27 C 1.47662 * 91.09040 * 335.68486 * 18 17 16 28 28 C 1.52667 * 113.18636 * 302.36684 * 16 15 14 29 29 C 1.46893 * 120.46661 * 356.51467 * 13 11 2 30 30 H 1.09003 * 109.47261 * 173.24942 * 1 2 3 31 31 H 1.09004 * 109.46679 * 293.25116 * 1 2 3 32 32 H 1.08996 * 109.47133 * 53.24531 * 1 2 3 33 33 H 1.09008 * 109.46781 * 185.00178 * 4 2 1 34 34 H 1.08990 * 109.47188 * 304.99971 * 4 2 1 35 35 H 1.07999 * 125.89785 * 359.95601 * 6 5 4 36 36 H 1.09004 * 109.46720 * 89.97580 * 9 8 7 37 37 H 1.08997 * 109.46941 * 209.97526 * 9 8 7 38 38 H 1.09001 * 109.47224 * 329.97965 * 9 8 7 39 39 H 1.08001 * 126.12811 * 180.23608 * 10 8 7 40 40 H 1.08997 * 109.68421 * 4.73870 * 14 13 11 41 41 H 1.08998 * 109.58105 * 244.24535 * 14 13 11 42 42 H 1.08995 * 109.53477 * 292.45605 * 15 14 13 43 43 H 1.09001 * 109.53261 * 172.30406 * 15 14 13 44 44 H 1.08998 * 113.79722 * 23.30281 * 17 16 15 45 45 H 1.09005 * 113.78606 * 154.76133 * 17 16 15 46 46 H 0.96994 * 119.99999 * 180.02562 * 22 21 19 47 47 H 1.08998 * 113.79228 * 270.04609 * 27 18 17 48 48 H 1.08996 * 113.79741 * 138.56925 * 27 18 17 49 49 H 1.09001 * 109.53281 * 177.49387 * 28 16 15 50 50 H 1.08996 * 109.53208 * 297.64106 * 28 16 15 51 51 H 1.09004 * 109.58786 * 115.75012 * 29 13 11 52 52 H 1.09002 * 109.71230 * 355.38206 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 6 2.3903 1.0665 -3.0902 7 7 1.7185 1.5022 -4.1249 8 7 0.5187 0.7832 -4.2023 9 6 -0.5263 0.9565 -5.2143 10 6 0.4978 -0.1007 -3.1827 11 6 2.0324 -0.7105 1.2305 12 8 2.6224 -1.7646 1.1236 13 7 1.8259 -0.1743 2.4497 14 6 2.2436 -0.8957 3.6610 15 6 3.1705 0.0123 4.4782 16 6 2.4859 1.3590 4.6988 17 6 3.2238 2.2687 5.6907 18 7 2.3779 1.6476 6.7296 19 6 2.4999 1.4613 8.0808 20 1 1.7776 0.8577 8.6101 21 6 3.5522 2.0482 8.7701 22 7 4.3252 2.9267 8.1674 23 14 3.8713 1.5911 10.5530 24 1 4.8935 0.5157 10.6130 25 1 4.3632 2.7834 11.2891 26 1 2.6108 1.1112 11.1741 27 6 1.3477 1.3079 5.7277 28 6 2.1011 2.0581 3.3972 29 6 1.1804 1.1381 2.5866 30 1 -0.3634 -1.0206 -0.1208 31 1 -0.3633 0.4057 0.9443 32 1 -0.3633 0.6149 -0.8233 33 1 3.1263 -0.7996 -1.2056 34 1 1.6053 -1.7198 -1.2952 35 1 3.3561 1.4246 -2.7657 36 1 -0.3262 0.2979 -6.0595 37 1 -1.4955 0.7084 -4.7818 38 1 -0.5344 1.9920 -5.5545 39 1 -0.2913 -0.8060 -2.9675 40 1 2.7761 -1.8048 3.3817 41 1 1.3661 -1.1514 4.2548 42 1 4.1041 0.1625 3.9362 43 1 3.3792 -0.4525 5.4417 44 1 4.2845 2.0395 5.7923 45 1 3.0288 3.3308 5.5420 46 1 5.0607 3.3365 8.6490 47 1 0.5953 2.0844 5.5900 48 1 0.9176 0.3150 5.8585 49 1 1.5795 2.9880 3.6234 50 1 3.0002 2.2755 2.8208 51 1 0.2284 1.0247 3.1052 52 1 1.0101 1.5688 1.5998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035829592.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:17 Heat of formation + Delta-G solvation = 94.487391 kcal Electronic energy + Delta-G solvation = -30900.299373 eV Core-core repulsion = 26903.268535 eV Total energy + Delta-G solvation = -3997.030837 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.52702 -40.40941 -38.80511 -35.74321 -35.36236 -33.34950 -32.45893 -31.19494 -30.59106 -29.91676 -28.04608 -26.86974 -25.94729 -25.07423 -24.12924 -23.37043 -22.34093 -21.34286 -21.05383 -20.31374 -19.13672 -17.75657 -17.03641 -16.69488 -16.50146 -16.00819 -15.62558 -15.39544 -14.85015 -14.72188 -14.63333 -14.24823 -14.01361 -13.79580 -13.74341 -13.48513 -13.37756 -13.07210 -12.95185 -12.62532 -12.45037 -12.31285 -12.28054 -12.07645 -11.99263 -11.70386 -11.35232 -11.27473 -11.15780 -10.95746 -10.84620 -10.82053 -10.70251 -10.33400 -10.14111 -9.71890 -9.70851 -9.66233 -9.42403 -9.31626 -8.71555 -8.60162 -8.37345 -6.84169 -5.76513 -3.06214 1.60283 2.23111 2.51978 2.74121 3.15945 3.40151 3.45274 3.47225 4.18484 4.46329 4.48151 4.53034 4.72260 4.74276 4.84086 4.87425 4.92992 4.98628 5.06800 5.17858 5.24446 5.25375 5.31114 5.36311 5.40665 5.49858 5.53290 5.54190 5.64842 5.69545 5.71956 5.89234 5.90273 5.95983 5.99414 6.04089 6.11882 6.21857 6.30384 6.34000 6.40337 6.48026 6.64102 6.68750 6.71250 6.82310 6.89989 7.22670 7.38594 7.42480 7.56007 7.57602 8.00469 8.29618 9.06751 9.73268 10.64901 11.41771 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027860 B = 0.002001 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.791061 B =13991.344805 C =14247.410829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 H 0.095 0.905 4 C -0.020 4.020 5 C -0.229 4.229 6 C 0.053 3.947 7 N -0.299 5.299 8 N -0.380 5.380 9 C 0.102 3.898 10 C 0.056 3.944 11 C 0.517 3.483 12 O -0.549 6.549 13 N -0.604 5.604 14 C 0.113 3.887 15 C -0.097 4.097 16 C -0.109 4.109 17 C 0.180 3.820 18 N -0.608 5.608 19 C -0.223 4.223 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.125 3.875 28 C -0.119 4.119 29 C 0.107 3.893 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.183 0.817 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.172 0.828 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.085 0.915 44 H 0.056 0.944 45 H 0.031 0.969 46 H 0.253 0.747 47 H 0.030 0.970 48 H 0.040 0.960 49 H 0.074 0.926 50 H 0.064 0.936 51 H 0.069 0.931 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.833 -4.669 -25.335 27.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.114 0.886 4 C -0.059 4.059 5 C -0.240 4.240 6 C -0.133 4.133 7 N -0.121 5.121 8 N -0.162 5.162 9 C -0.039 4.039 10 C -0.090 4.090 11 C 0.305 3.695 12 O -0.427 6.427 13 N -0.337 5.337 14 C -0.009 4.009 15 C -0.135 4.135 16 C -0.110 4.110 17 C 0.055 3.945 18 N -0.334 5.334 19 C -0.351 4.351 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.566 5.566 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.206 1.206 27 C -0.001 4.001 28 C -0.158 4.158 29 C -0.015 4.015 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.200 0.800 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.189 0.811 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.075 0.925 45 H 0.048 0.952 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.058 0.942 49 H 0.093 0.907 50 H 0.082 0.918 51 H 0.087 0.913 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.532 -4.342 -26.151 28.525 hybrid contribution 0.084 -0.387 1.828 1.871 sum -10.448 -4.730 -24.323 26.891 Atomic orbital electron populations 1.21887 0.93117 1.02558 1.02709 1.21282 0.97563 1.00952 0.92802 0.88646 1.19667 1.01562 0.96948 0.87693 1.20089 0.96721 1.04577 1.02649 1.23863 1.00159 0.96055 0.93192 1.77369 0.94046 1.19035 1.21621 1.48460 1.15996 1.28667 1.23087 1.21837 0.87790 1.04186 0.90130 1.22343 1.00100 0.96123 0.90393 1.20639 0.78922 0.85426 0.84470 1.90665 1.42120 1.23566 1.86354 1.48152 1.59627 1.19938 1.05978 1.21699 0.98800 0.95706 0.84650 1.21486 0.97292 0.94424 1.00283 1.22372 0.99182 0.96596 0.92827 1.22085 0.95973 0.93365 0.83102 1.46072 1.17000 1.67296 1.02998 1.19018 1.09440 1.24832 0.81764 0.90406 1.24796 0.99329 0.98275 0.98024 1.69852 1.20422 1.29948 1.36388 0.86156 0.78023 0.77415 0.84498 1.21603 1.21815 1.20638 1.22593 0.91974 0.97373 0.88116 1.21834 0.99394 0.98036 0.96541 1.21878 0.96091 0.82773 1.00790 0.92228 0.91719 0.91669 0.90418 0.90730 0.80040 0.90884 0.89516 0.89339 0.81132 0.89410 0.91581 0.92164 0.89671 0.92545 0.95159 0.93706 0.95272 0.94187 0.90710 0.91762 0.91286 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.29 37.16 0.31 -0.81 16 2 C -0.10 -0.99 1.86 -91.77 -0.17 -1.16 16 3 H 0.10 0.86 7.19 -51.93 -0.37 0.48 16 4 C -0.02 -0.19 4.48 -27.88 -0.12 -0.31 16 5 C -0.23 -2.02 4.82 -105.05 -0.51 -2.52 16 6 C 0.05 0.51 11.96 -17.36 -0.21 0.30 16 7 N -0.30 -3.21 12.58 30.63 0.39 -2.82 16 8 N -0.38 -3.12 4.01 -68.16 -0.27 -3.40 16 9 C 0.10 0.42 11.47 59.85 0.69 1.11 16 10 C 0.06 0.42 10.23 -17.22 -0.18 0.25 16 11 C 0.52 6.75 6.99 -10.98 -0.08 6.67 16 12 O -0.55 -9.02 15.39 5.56 0.09 -8.93 16 13 N -0.60 -7.80 2.94 -172.52 -0.51 -8.31 16 14 C 0.11 1.65 6.31 -3.57 -0.02 1.62 16 15 C -0.10 -1.62 5.21 -26.72 -0.14 -1.76 16 16 C -0.11 -1.89 0.77 -154.42 -0.12 -2.00 16 17 C 0.18 4.12 6.42 -3.16 -0.02 4.10 16 18 N -0.61 -15.21 3.52 -179.76 -0.63 -15.84 16 19 C -0.22 -6.20 10.68 -15.06 -0.16 -6.36 16 20 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 21 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 22 N -0.92 -27.36 11.84 55.49 0.66 -26.70 16 23 Si 0.91 22.21 29.56 -169.99 -5.03 17.18 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.13 2.44 7.72 -3.14 -0.02 2.42 16 28 C -0.12 -1.61 5.26 -26.73 -0.14 -1.75 16 29 C 0.11 1.19 4.83 -3.65 -0.02 1.18 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.50 5.91 -51.93 -0.31 0.19 16 32 H 0.06 0.45 6.86 -51.93 -0.36 0.09 16 33 H 0.08 0.81 8.06 -51.92 -0.42 0.39 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.09 1.34 6.98 -51.93 -0.36 0.98 16 41 H 0.07 0.93 7.49 -51.93 -0.39 0.54 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.62 8.01 -51.93 -0.42 1.21 16 44 H 0.06 1.43 7.72 -51.93 -0.40 1.03 16 45 H 0.03 0.73 8.09 -51.93 -0.42 0.31 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 47 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 48 H 0.04 0.75 7.41 -51.93 -0.38 0.36 16 49 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 50 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 52 H 0.08 0.74 4.92 -51.93 -0.26 0.48 16 LS Contribution 406.13 15.07 6.12 6.12 Total: -1.00 -34.95 406.13 -8.89 -43.84 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.70 Total: -1.79 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.01 Total: 0.65 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.37 Total: -57.07 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.95 -8.89 -43.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035829592.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.329 kcal (2) G-P(sol) polarization free energy of solvation -34.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds