Wall clock time and date at job start Wed Apr 1 2020 04:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47740 * 2 1 4 4 C 1.53006 * 109.46854 * 239.99840 * 2 1 3 5 5 C 1.50701 * 109.47041 * 65.00318 * 4 2 1 6 6 C 1.39876 * 126.03893 * 90.02183 * 5 4 2 7 7 N 1.30837 * 108.19880 * 179.97438 * 6 5 4 8 8 N 1.40086 * 108.20708 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.03679 * 179.97438 * 8 7 6 10 10 C 1.34951 * 107.92513 * 359.75538 * 8 7 6 11 11 C 1.50708 * 109.47276 * 120.00093 * 2 1 3 12 12 O 1.21277 * 119.99886 * 113.06013 * 11 2 1 13 13 N 1.34775 * 119.99863 * 293.06170 * 11 2 1 14 14 C 1.47047 * 120.43136 * 176.49416 * 13 11 2 15 15 C 1.53337 * 108.67484 * 124.51814 * 14 13 11 16 16 C 1.52678 * 109.16691 * 52.38092 * 15 14 13 17 17 C 1.53484 * 113.61559 * 170.82809 * 16 15 14 18 18 N 1.47663 * 85.99097 * 269.02630 * 17 16 15 19 19 C 1.36942 * 134.45843 * 155.67791 * 18 17 16 20 20 H 1.07992 * 120.00283 * 187.51525 * 19 18 17 21 21 C 1.38808 * 119.99715 * 7.51145 * 19 18 17 22 22 N 1.31626 * 120.00336 * 9.24878 * 21 19 18 23 23 Si 1.86802 * 119.99957 * 189.25127 * 21 19 18 24 24 H 1.48496 * 109.47282 * 94.85083 * 23 21 19 25 25 H 1.48507 * 109.46824 * 214.85133 * 23 21 19 26 26 H 1.48494 * 109.46934 * 334.84631 * 23 21 19 27 27 C 1.47662 * 91.09040 * 335.68486 * 18 17 16 28 28 C 1.52667 * 113.18636 * 302.36684 * 16 15 14 29 29 C 1.46893 * 120.46661 * 356.51467 * 13 11 2 30 30 H 1.09003 * 109.47261 * 173.24942 * 1 2 3 31 31 H 1.09004 * 109.46679 * 293.25116 * 1 2 3 32 32 H 1.08996 * 109.47133 * 53.24531 * 1 2 3 33 33 H 1.09008 * 109.46781 * 185.00178 * 4 2 1 34 34 H 1.08990 * 109.47188 * 304.99971 * 4 2 1 35 35 H 1.07999 * 125.89785 * 359.95601 * 6 5 4 36 36 H 1.09004 * 109.46720 * 89.97580 * 9 8 7 37 37 H 1.08997 * 109.46941 * 209.97526 * 9 8 7 38 38 H 1.09001 * 109.47224 * 329.97965 * 9 8 7 39 39 H 1.08001 * 126.12811 * 180.23608 * 10 8 7 40 40 H 1.08997 * 109.68421 * 4.73870 * 14 13 11 41 41 H 1.08998 * 109.58105 * 244.24535 * 14 13 11 42 42 H 1.08995 * 109.53477 * 292.45605 * 15 14 13 43 43 H 1.09001 * 109.53261 * 172.30406 * 15 14 13 44 44 H 1.08998 * 113.79722 * 23.30281 * 17 16 15 45 45 H 1.09005 * 113.78606 * 154.76133 * 17 16 15 46 46 H 0.96994 * 119.99999 * 180.02562 * 22 21 19 47 47 H 1.08998 * 113.79228 * 270.04609 * 27 18 17 48 48 H 1.08996 * 113.79741 * 138.56925 * 27 18 17 49 49 H 1.09001 * 109.53281 * 177.49387 * 28 16 15 50 50 H 1.08996 * 109.53208 * 297.64106 * 28 16 15 51 51 H 1.09004 * 109.58786 * 115.75012 * 29 13 11 52 52 H 1.09002 * 109.71230 * 355.38206 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 6 2.3903 1.0665 -3.0902 7 7 1.7185 1.5022 -4.1249 8 7 0.5187 0.7832 -4.2023 9 6 -0.5263 0.9565 -5.2143 10 6 0.4978 -0.1007 -3.1827 11 6 2.0324 -0.7105 1.2305 12 8 2.6224 -1.7646 1.1236 13 7 1.8259 -0.1743 2.4497 14 6 2.2436 -0.8957 3.6610 15 6 3.1705 0.0123 4.4782 16 6 2.4859 1.3590 4.6988 17 6 3.2238 2.2687 5.6907 18 7 2.3779 1.6476 6.7296 19 6 2.4999 1.4613 8.0808 20 1 1.7776 0.8577 8.6101 21 6 3.5522 2.0482 8.7701 22 7 4.3252 2.9267 8.1674 23 14 3.8713 1.5911 10.5530 24 1 4.8935 0.5157 10.6130 25 1 4.3632 2.7834 11.2891 26 1 2.6108 1.1112 11.1741 27 6 1.3477 1.3079 5.7277 28 6 2.1011 2.0581 3.3972 29 6 1.1804 1.1381 2.5866 30 1 -0.3634 -1.0206 -0.1208 31 1 -0.3633 0.4057 0.9443 32 1 -0.3633 0.6149 -0.8233 33 1 3.1263 -0.7996 -1.2056 34 1 1.6053 -1.7198 -1.2952 35 1 3.3561 1.4246 -2.7657 36 1 -0.3262 0.2979 -6.0595 37 1 -1.4955 0.7084 -4.7818 38 1 -0.5344 1.9920 -5.5545 39 1 -0.2913 -0.8060 -2.9675 40 1 2.7761 -1.8048 3.3817 41 1 1.3661 -1.1514 4.2548 42 1 4.1041 0.1625 3.9362 43 1 3.3792 -0.4525 5.4417 44 1 4.2845 2.0395 5.7923 45 1 3.0288 3.3308 5.5420 46 1 5.0607 3.3365 8.6490 47 1 0.5953 2.0844 5.5900 48 1 0.9176 0.3150 5.8585 49 1 1.5795 2.9880 3.6234 50 1 3.0002 2.2755 2.8208 51 1 0.2284 1.0247 3.1052 52 1 1.0101 1.5688 1.5998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035829592.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:16 Heat of formation + Delta-G solvation = 73.125749 kcal Electronic energy + Delta-G solvation = -30901.225683 eV Core-core repulsion = 26903.268535 eV Total energy + Delta-G solvation = -3997.957147 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.15588 -41.56652 -40.18589 -37.04612 -36.14428 -34.41755 -33.86440 -32.27852 -31.99738 -30.81471 -28.68729 -28.51191 -26.79939 -26.51753 -25.36933 -24.59317 -23.54226 -22.54548 -21.87536 -21.06948 -20.16625 -18.89877 -18.67207 -17.94718 -17.34580 -16.96019 -16.82376 -16.38401 -16.17884 -16.11049 -15.63739 -15.32837 -15.18863 -15.04322 -14.86678 -14.47000 -14.08384 -13.99230 -13.81738 -13.64672 -13.54438 -13.45089 -13.17580 -13.11077 -12.97672 -12.89154 -12.80266 -12.77711 -12.58896 -12.16573 -12.14226 -11.99957 -11.92595 -11.68175 -11.48089 -11.37067 -11.14045 -11.01150 -10.76258 -10.51865 -10.28611 -9.51970 -9.21114 -8.87505 -7.91177 -5.21028 1.02588 1.44003 1.46005 1.54434 1.73325 1.77167 1.84685 2.17084 2.48353 3.31753 3.42811 3.54704 3.64346 3.76765 3.98804 3.99636 4.04963 4.12503 4.19919 4.22164 4.34411 4.40840 4.45651 4.49356 4.50920 4.61981 4.71215 4.73021 4.75067 4.76054 4.79129 4.83262 4.94174 4.95704 4.98079 5.02640 5.07976 5.08802 5.16990 5.23096 5.26525 5.31798 5.33413 5.37329 5.47083 5.57677 5.61993 5.76790 5.78216 5.95826 6.22764 6.55393 6.81100 6.93865 7.27748 7.63400 8.61784 9.27247 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027860 B = 0.002001 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.791061 B =13991.344805 C =14247.410829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.106 0.894 4 C -0.010 4.010 5 C -0.242 4.242 6 C 0.042 3.958 7 N -0.338 5.338 8 N -0.382 5.382 9 C 0.093 3.907 10 C 0.067 3.933 11 C 0.515 3.485 12 O -0.587 6.587 13 N -0.605 5.605 14 C 0.124 3.876 15 C -0.090 4.090 16 C -0.080 4.080 17 C 0.175 3.825 18 N -0.638 5.638 19 C -0.229 4.229 20 H 0.082 0.918 21 C -0.070 4.070 22 N -0.955 5.955 23 Si 0.974 3.026 24 H -0.290 1.290 25 H -0.296 1.296 26 H -0.266 1.266 27 C 0.129 3.871 28 C -0.115 4.115 29 C 0.112 3.888 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.189 0.811 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.202 0.798 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.018 0.982 45 H 0.017 0.983 46 H 0.247 0.753 47 H 0.047 0.953 48 H 0.052 0.948 49 H 0.086 0.914 50 H 0.066 0.934 51 H 0.085 0.915 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.857 -5.121 -26.987 30.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.124 0.876 4 C -0.050 4.050 5 C -0.254 4.254 6 C -0.144 4.144 7 N -0.160 5.160 8 N -0.164 5.164 9 C -0.047 4.047 10 C -0.080 4.080 11 C 0.305 3.695 12 O -0.468 6.468 13 N -0.337 5.337 14 C 0.001 3.999 15 C -0.129 4.129 16 C -0.081 4.081 17 C 0.049 3.951 18 N -0.364 5.364 19 C -0.358 4.358 20 H 0.100 0.900 21 C -0.263 4.263 22 N -0.604 5.604 23 Si 0.802 3.198 24 H -0.217 1.217 25 H -0.223 1.223 26 H -0.190 1.190 27 C 0.005 3.995 28 C -0.153 4.153 29 C -0.010 4.010 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.206 0.794 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.106 0.894 39 H 0.219 0.781 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.036 0.964 45 H 0.035 0.965 46 H 0.056 0.944 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.104 0.896 50 H 0.085 0.915 51 H 0.103 0.897 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.604 -4.790 -27.838 31.352 hybrid contribution 0.998 -0.279 2.278 2.503 sum -12.606 -5.069 -25.560 28.947 Atomic orbital electron populations 1.21872 0.91125 1.03144 1.03584 1.21292 0.99008 1.00729 0.90692 0.87599 1.19508 1.00414 0.96894 0.88138 1.20025 0.97492 1.04910 1.02930 1.24099 1.00659 0.96386 0.93211 1.77312 0.95552 1.20647 1.22496 1.48796 1.15786 1.28133 1.23653 1.22168 0.88015 1.04546 0.90010 1.22798 1.00176 0.95657 0.89375 1.21309 0.77968 0.85007 0.85206 1.90653 1.43773 1.25471 1.86870 1.48217 1.59536 1.20495 1.05424 1.21453 0.98398 0.94824 0.85199 1.21368 0.97780 0.94534 0.99202 1.22082 0.96672 0.95610 0.93785 1.22038 0.94251 0.93631 0.85130 1.46457 1.19582 1.67504 1.02905 1.19414 1.09057 1.23867 0.83430 0.90031 1.25612 0.99630 0.98864 1.02153 1.70030 1.21052 1.31515 1.37798 0.85124 0.78137 0.76643 0.79856 1.21712 1.22298 1.19026 1.22772 0.91913 0.98241 0.86586 1.21812 1.00429 0.98661 0.94441 1.22024 0.95525 0.81140 1.02290 0.92005 0.91156 0.90257 0.92210 0.91115 0.79375 0.89919 0.86604 0.89438 0.78082 0.90350 0.90600 0.92828 0.92641 0.96381 0.96496 0.94442 0.93505 0.92935 0.89558 0.91496 0.89673 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.29 71.98 0.60 -0.99 16 2 C -0.10 -1.56 1.86 -11.54 -0.02 -1.58 16 3 H 0.11 1.54 7.19 -2.39 -0.02 1.52 16 4 C -0.01 -0.18 4.48 29.85 0.13 -0.05 16 5 C -0.24 -3.79 4.82 -20.14 -0.10 -3.88 16 6 C 0.04 0.75 11.96 85.24 1.02 1.77 16 7 N -0.34 -6.84 12.58 -57.02 -0.72 -7.56 16 8 N -0.38 -5.36 4.01 -369.56 -1.48 -6.84 16 9 C 0.09 0.51 11.47 127.77 1.47 1.97 16 10 C 0.07 0.80 10.23 83.54 0.85 1.66 16 11 C 0.51 12.43 6.99 87.66 0.61 13.04 16 12 O -0.59 -18.87 15.39 -3.02 -0.05 -18.92 16 13 N -0.60 -14.17 2.94 -818.11 -2.41 -16.58 16 14 C 0.12 3.46 6.31 86.39 0.55 4.00 16 15 C -0.09 -3.05 5.21 30.60 0.16 -2.89 16 16 C -0.08 -2.74 0.77 -52.03 -0.04 -2.78 16 17 C 0.18 8.24 6.42 86.31 0.55 8.80 16 18 N -0.64 -32.33 3.52 -722.64 -2.54 -34.87 16 19 C -0.23 -12.91 10.68 84.03 0.90 -12.01 16 20 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 21 C -0.07 -4.04 5.48 84.86 0.47 -3.57 16 22 N -0.95 -58.90 11.84 21.65 0.26 -58.65 16 23 Si 0.97 46.55 29.56 68.60 2.03 48.58 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 27 C 0.13 4.86 7.72 86.33 0.67 5.52 16 28 C -0.11 -2.82 5.26 30.60 0.16 -2.66 16 29 C 0.11 2.06 4.83 86.42 0.42 2.48 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.74 5.91 -2.39 -0.01 0.73 16 32 H 0.08 0.72 6.86 -2.39 -0.02 0.70 16 33 H 0.06 1.23 8.06 -2.38 -0.02 1.21 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.19 2.81 8.06 -2.91 -0.02 2.78 16 36 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 37 H 0.12 -0.05 8.14 -2.39 -0.02 -0.06 16 38 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.20 1.03 8.06 -2.91 -0.02 1.00 16 40 H 0.08 2.37 6.98 -2.39 -0.02 2.36 16 41 H 0.08 1.99 7.49 -2.39 -0.02 1.97 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.05 2.19 8.01 -2.39 -0.02 2.17 16 44 H 0.02 0.96 7.72 -2.39 -0.02 0.94 16 45 H 0.02 0.84 8.09 -2.38 -0.02 0.82 16 46 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 47 H 0.05 1.65 8.07 -2.39 -0.02 1.63 16 48 H 0.05 1.85 7.41 -2.39 -0.02 1.83 16 49 H 0.09 2.00 8.12 -2.39 -0.02 1.98 16 50 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 51 H 0.09 1.39 8.07 -2.38 -0.02 1.37 16 52 H 0.12 1.47 4.92 -2.39 -0.01 1.46 16 Total: -1.00 -79.13 406.13 4.38 -74.75 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.90 Total: 11.24 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 8.39 Total: 8.84 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -6.89 Total: -124.49 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.05 Total: -18.92 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -79.13 4.38 -74.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035829592.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.875 kcal (2) G-P(sol) polarization free energy of solvation -79.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds