Wall clock time and date at job start Wed Apr 1 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46957 * 2 1 4 4 C 1.50700 * 109.47095 * 239.99487 * 2 1 3 5 5 O 1.21278 * 119.99805 * 336.12141 * 4 2 1 6 6 N 1.34775 * 119.99679 * 156.11664 * 4 2 1 7 7 C 1.46933 * 120.62792 * 175.13496 * 6 4 2 8 8 C 1.53190 * 108.77263 * 233.63453 * 7 6 4 9 9 C 1.53034 * 109.31262 * 305.36213 * 8 7 6 10 10 C 1.53006 * 109.46089 * 181.39099 * 9 8 7 11 11 H 1.09000 * 110.63650 * 298.31148 * 10 9 8 12 12 C 1.55157 * 110.72129 * 174.97717 * 10 9 8 13 13 C 1.55134 * 101.48479 * 205.96475 * 12 10 9 14 14 N 1.47428 * 104.71883 * 37.29677 * 13 12 10 15 15 C 1.36940 * 125.64499 * 155.81583 * 14 13 12 16 16 H 1.07996 * 119.99808 * 189.49754 * 15 14 13 17 17 C 1.38804 * 120.00019 * 9.49783 * 15 14 13 18 18 N 1.31624 * 120.00424 * 30.05213 * 17 15 14 19 19 Si 1.86798 * 120.00018 * 210.05039 * 17 15 14 20 20 H 1.48505 * 109.47258 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47364 * 119.99898 * 19 17 15 22 22 H 1.48498 * 109.47387 * 240.00190 * 19 17 15 23 23 C 1.47022 * 108.70631 * 335.55275 * 14 13 12 24 24 C 1.53036 * 109.54016 * 61.37134 * 9 8 7 25 25 C 1.46918 * 120.63423 * 355.15856 * 6 4 2 26 26 N 1.46496 * 109.46979 * 119.99212 * 2 1 3 27 27 C 1.34955 * 126.03586 * 35.00776 * 26 2 1 28 28 C 1.35317 * 107.74109 * 179.97438 * 27 26 2 29 29 C 1.39864 * 107.92362 * 359.97438 * 28 27 26 30 30 N 1.30836 * 108.20131 * 359.74179 * 29 28 27 31 31 H 1.08997 * 109.47220 * 64.59815 * 1 2 3 32 32 H 1.08998 * 109.47331 * 184.60186 * 1 2 3 33 33 H 1.09002 * 109.47243 * 304.59778 * 1 2 3 34 34 H 1.08990 * 109.58343 * 113.84395 * 7 6 4 35 35 H 1.09001 * 109.70129 * 353.48930 * 7 6 4 36 36 H 1.09003 * 109.49535 * 185.41352 * 8 7 6 37 37 H 1.08996 * 109.52917 * 65.33436 * 8 7 6 38 38 H 1.08997 * 109.46532 * 301.36189 * 9 8 7 39 39 H 1.08996 * 111.00315 * 324.20558 * 12 10 9 40 40 H 1.09002 * 111.00213 * 88.06284 * 12 10 9 41 41 H 1.08994 * 110.49973 * 278.45508 * 13 12 10 42 42 H 1.08999 * 110.33693 * 156.06043 * 13 12 10 43 43 H 0.97003 * 119.99050 * 5.66729 * 18 17 15 44 44 H 1.08994 * 109.88575 * 120.70175 * 23 14 13 45 45 H 1.09001 * 109.88301 * 241.72121 * 23 14 13 46 46 H 1.09001 * 109.49746 * 58.58318 * 24 9 8 47 47 H 1.09003 * 109.50250 * 178.68402 * 24 9 8 48 48 H 1.09001 * 109.58949 * 246.15433 * 25 6 4 49 49 H 1.09000 * 109.59018 * 6.58397 * 25 6 4 50 50 H 1.07995 * 126.12869 * 359.94690 * 27 26 2 51 51 H 1.08007 * 126.03144 * 179.97438 * 28 27 26 52 52 H 1.08006 * 125.89654 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 1.3290 -1.5247 -1.7901 6 7 3.2632 -0.4411 -1.7088 7 6 3.8084 -1.2003 -2.8424 8 6 5.1735 -1.7697 -2.4435 9 6 6.0742 -0.6318 -1.9578 10 6 7.4500 -1.1918 -1.5911 11 1 7.3669 -1.9140 -0.7789 12 6 8.4264 -0.0463 -1.2144 13 6 9.7986 -0.6868 -1.5511 14 7 9.5525 -1.4814 -2.7683 15 6 10.4978 -1.8399 -3.6920 16 1 10.1964 -2.2903 -4.6261 17 6 11.8433 -1.6243 -3.4276 18 7 12.2833 -1.6530 -2.1874 19 14 13.0297 -1.2935 -4.8320 20 1 12.2906 -1.3143 -6.1199 21 1 13.6603 0.0378 -4.6442 22 1 14.0817 -2.3415 -4.8487 23 6 8.1254 -1.8307 -2.8229 24 6 5.4475 0.0272 -0.7269 25 6 4.0854 0.6170 -1.1064 26 7 2.0183 -0.6904 1.1962 27 6 1.4402 -1.7558 1.7896 28 6 2.1967 -2.0926 2.8598 29 6 3.2743 -1.2031 2.9222 30 7 3.1715 -0.3659 1.9221 31 1 -0.3633 0.4408 -0.9283 32 1 -0.3634 -1.0243 0.0824 33 1 -0.3634 0.5835 0.8459 34 1 3.9248 -0.5403 -3.7020 35 1 3.1324 -2.0165 -3.0973 36 1 5.6319 -2.2537 -3.3059 37 1 5.0445 -2.4985 -1.6433 38 1 6.1830 0.1087 -2.7501 39 1 8.2443 0.8386 -1.8242 40 1 8.3583 0.1918 -0.1529 41 1 10.1287 -1.3321 -0.7371 42 1 10.5403 0.0876 -1.7471 43 1 11.6853 -1.9055 -1.4665 44 1 7.6815 -1.4346 -3.7361 45 1 8.0075 -2.9139 -2.7930 46 1 5.3154 -0.7182 0.0573 47 1 6.1008 0.8223 -0.3675 48 1 4.2244 1.4252 -1.8244 49 1 3.5915 0.9998 -0.2133 50 1 0.5356 -2.2505 1.4682 51 1 2.0026 -2.9049 3.5447 52 1 4.0581 -1.2091 3.6653 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039113936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:36 Heat of formation + Delta-G solvation = 68.578884 kcal Electronic energy + Delta-G solvation = -31653.124430 eV Core-core repulsion = 27654.970115 eV Total energy + Delta-G solvation = -3998.154314 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -41.70376 -40.36835 -38.69166 -36.88763 -34.93262 -33.92333 -31.90741 -31.37235 -30.33752 -29.78441 -29.12814 -28.03063 -25.66417 -24.88383 -23.64977 -23.19702 -21.83000 -21.31814 -20.57611 -20.02702 -19.49860 -19.22478 -18.00327 -17.50372 -17.43408 -16.34611 -15.49559 -15.02816 -14.93879 -14.84512 -14.54203 -14.25973 -14.01900 -13.82685 -13.67732 -13.63060 -13.28639 -13.14250 -13.03798 -12.97043 -12.89300 -12.71252 -12.36477 -12.15049 -11.95615 -11.63249 -11.38062 -11.25344 -11.13620 -10.95221 -10.73407 -10.56729 -10.50366 -10.36423 -10.07873 -10.02425 -9.92527 -9.88488 -9.59725 -9.51106 -8.89601 -8.85988 -8.33407 -6.90575 -6.08101 -3.03584 1.45909 1.71149 2.59903 2.62167 2.68593 3.54010 3.57325 3.70633 3.93368 3.95686 4.32830 4.56403 4.61268 4.66993 4.70704 4.75134 4.77870 4.95233 5.01565 5.11493 5.13918 5.23110 5.27379 5.31854 5.35045 5.44224 5.49493 5.50570 5.56749 5.60839 5.61358 5.73272 5.76111 5.84600 5.93041 5.94022 6.06501 6.10159 6.19210 6.33379 6.34044 6.37643 6.45182 6.52754 6.63667 6.68828 6.91262 7.03188 7.07357 7.11168 7.40672 7.71307 7.82776 8.53037 9.07464 9.87793 10.43464 11.27035 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020049 B = 0.002417 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.270423 B =11580.878519 C =12343.490648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.143 3.857 3 H 0.121 0.879 4 C 0.505 3.495 5 O -0.533 6.533 6 N -0.595 5.595 7 C 0.111 3.889 8 C -0.128 4.128 9 C -0.074 4.074 10 C -0.092 4.092 11 H 0.068 0.932 12 C -0.129 4.129 13 C 0.144 3.856 14 N -0.606 5.606 15 C -0.336 4.336 16 H 0.067 0.933 17 C -0.027 4.027 18 N -0.920 5.920 19 Si 1.065 2.935 20 H -0.293 1.293 21 H -0.290 1.290 22 H -0.295 1.295 23 C 0.144 3.856 24 C -0.121 4.121 25 C 0.103 3.897 26 N -0.367 5.367 27 C 0.063 3.937 28 C -0.272 4.272 29 C 0.051 3.949 30 N -0.289 5.289 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.021 0.979 42 H 0.052 0.948 43 H 0.269 0.731 44 H 0.024 0.976 45 H 0.017 0.983 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.089 0.911 50 H 0.172 0.828 51 H 0.148 0.852 52 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.649 5.332 8.584 27.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.037 3.963 3 H 0.138 0.862 4 C 0.290 3.710 5 O -0.409 6.409 6 N -0.328 5.328 7 C -0.011 4.011 8 C -0.166 4.166 9 C -0.093 4.093 10 C -0.111 4.111 11 H 0.087 0.913 12 C -0.167 4.167 13 C 0.019 3.981 14 N -0.333 5.333 15 C -0.463 4.463 16 H 0.085 0.915 17 C -0.228 4.228 18 N -0.562 5.562 19 Si 0.895 3.105 20 H -0.219 1.219 21 H -0.217 1.217 22 H -0.223 1.223 23 C 0.019 3.981 24 C -0.159 4.159 25 C -0.020 4.020 26 N -0.151 5.151 27 C -0.083 4.083 28 C -0.301 4.301 29 C -0.136 4.136 30 N -0.109 5.109 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.042 0.958 45 H 0.035 0.965 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.089 0.911 49 H 0.107 0.893 50 H 0.189 0.811 51 H 0.166 0.834 52 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -23.910 6.315 7.074 25.722 hybrid contribution -1.761 -1.280 0.804 2.321 sum -25.671 5.035 7.878 27.321 Atomic orbital electron populations 1.22005 0.90279 1.04549 1.04034 1.21338 0.96700 0.97752 0.80484 0.86162 1.20663 0.81769 0.83210 0.85392 1.90710 1.55671 1.34538 1.59982 1.48180 1.15014 1.36239 1.33357 1.21713 0.95499 0.96314 0.87560 1.21982 0.94056 0.98368 1.02238 1.21141 0.94087 0.96845 0.97200 1.22150 0.92888 0.97578 0.98472 0.91328 1.22885 0.96878 0.97281 0.99655 1.21573 0.93672 0.93731 0.89170 1.44626 1.03223 1.60335 1.25148 1.19793 0.87989 1.42448 0.96114 0.91535 1.25650 0.95199 1.00388 1.01584 1.70728 1.37544 1.47427 1.00508 0.83548 0.75415 0.76888 0.74668 1.21928 1.21693 1.22283 1.21292 0.86075 0.96128 0.94653 1.21874 0.94607 1.01111 0.98313 1.21960 0.92453 0.89216 0.98343 1.48482 1.19944 1.24882 1.21776 1.22521 1.00046 0.90731 0.94962 1.21526 0.99204 1.06254 1.03113 1.23949 0.99022 0.93703 0.96893 1.77381 1.01744 1.24270 1.07504 0.89507 0.90410 0.90629 0.91117 0.89200 0.90005 0.91799 0.90924 0.91813 0.92133 0.96124 0.92931 0.91922 0.95802 0.96517 0.91225 0.90309 0.91093 0.89272 0.81108 0.83426 0.79852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.37 37.16 0.31 -0.64 16 2 C 0.14 1.22 2.84 -69.08 -0.20 1.03 16 3 H 0.12 0.86 6.33 -51.93 -0.33 0.53 16 4 C 0.50 5.72 7.14 -10.99 -0.08 5.64 16 5 O -0.53 -7.51 15.61 5.56 0.09 -7.42 16 6 N -0.60 -6.54 2.97 -172.77 -0.51 -7.05 16 7 C 0.11 1.27 6.41 -3.71 -0.02 1.25 16 8 C -0.13 -1.62 5.17 -26.62 -0.14 -1.76 16 9 C -0.07 -0.97 1.52 -90.58 -0.14 -1.11 16 10 C -0.09 -1.54 2.49 -88.78 -0.22 -1.76 16 11 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 12 C -0.13 -2.29 5.62 -24.46 -0.14 -2.43 16 13 C 0.14 3.42 5.22 -2.41 -0.01 3.41 16 14 N -0.61 -15.78 3.35 -169.93 -0.57 -16.35 16 15 C -0.34 -9.75 10.03 -15.06 -0.15 -9.90 16 16 H 0.07 1.93 7.99 -52.49 -0.42 1.51 16 17 C -0.03 -0.80 5.04 -17.43 -0.09 -0.88 16 18 N -0.92 -28.40 12.75 55.49 0.71 -27.69 16 19 Si 1.06 25.97 30.01 -169.99 -5.10 20.87 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 23 C 0.14 3.04 5.83 -3.06 -0.02 3.02 16 24 C -0.12 -1.37 5.21 -26.61 -0.14 -1.51 16 25 C 0.10 0.99 6.27 -3.71 -0.02 0.97 16 26 N -0.37 -3.57 3.51 -55.99 -0.20 -3.77 16 27 C 0.06 0.56 10.58 -17.22 -0.18 0.37 16 28 C -0.27 -2.36 10.80 -40.01 -0.43 -2.79 16 29 C 0.05 0.48 12.03 -17.37 -0.21 0.27 16 30 N -0.29 -3.11 11.87 30.62 0.36 -2.75 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.53 6.80 -51.93 -0.35 0.18 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.11 7.04 -51.93 -0.37 0.75 16 36 H 0.08 1.07 7.11 -51.93 -0.37 0.70 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 39 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 40 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 41 H 0.02 0.53 6.96 -51.93 -0.36 0.17 16 42 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 43 H 0.27 8.32 5.96 -40.82 -0.24 8.07 16 44 H 0.02 0.50 7.56 -51.93 -0.39 0.11 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.08 0.87 7.37 -51.93 -0.38 0.49 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.09 0.80 4.80 -51.93 -0.25 0.55 16 50 H 0.17 1.14 7.14 -52.49 -0.37 0.77 16 51 H 0.15 0.98 8.06 -52.48 -0.42 0.55 16 52 H 0.18 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 400.11 15.07 6.03 6.03 Total: -1.00 -34.96 400.11 -9.59 -44.55 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -8.52 Total: 0.39 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -1.88 Total: -6.82 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.21 Total: -57.60 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.09 Total: -7.42 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.10 Total: 20.87 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.96 -9.59 -44.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039113936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.128 kcal (2) G-P(sol) polarization free energy of solvation -34.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds