Wall clock time and date at job start Wed Apr 1 2020 06:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46957 * 2 1 4 4 C 1.50700 * 109.47095 * 239.99487 * 2 1 3 5 5 O 1.21278 * 119.99805 * 336.12141 * 4 2 1 6 6 N 1.34775 * 119.99679 * 156.11664 * 4 2 1 7 7 C 1.46933 * 120.62792 * 175.13496 * 6 4 2 8 8 C 1.53190 * 108.77263 * 233.63453 * 7 6 4 9 9 C 1.53034 * 109.31262 * 305.36213 * 8 7 6 10 10 C 1.53006 * 109.46089 * 181.39099 * 9 8 7 11 11 H 1.09000 * 110.63650 * 298.31148 * 10 9 8 12 12 C 1.55157 * 110.72129 * 174.97717 * 10 9 8 13 13 C 1.55134 * 101.48479 * 205.96475 * 12 10 9 14 14 N 1.47428 * 104.71883 * 37.29677 * 13 12 10 15 15 C 1.36940 * 125.64499 * 155.81583 * 14 13 12 16 16 H 1.07996 * 119.99808 * 189.49754 * 15 14 13 17 17 C 1.38804 * 120.00019 * 9.49783 * 15 14 13 18 18 N 1.31624 * 120.00424 * 30.05213 * 17 15 14 19 19 Si 1.86798 * 120.00018 * 210.05039 * 17 15 14 20 20 H 1.48505 * 109.47258 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47364 * 119.99898 * 19 17 15 22 22 H 1.48498 * 109.47387 * 240.00190 * 19 17 15 23 23 C 1.47022 * 108.70631 * 335.55275 * 14 13 12 24 24 C 1.53036 * 109.54016 * 61.37134 * 9 8 7 25 25 C 1.46918 * 120.63423 * 355.15856 * 6 4 2 26 26 N 1.46496 * 109.46979 * 119.99212 * 2 1 3 27 27 C 1.34955 * 126.03586 * 35.00776 * 26 2 1 28 28 C 1.35317 * 107.74109 * 179.97438 * 27 26 2 29 29 C 1.39864 * 107.92362 * 359.97438 * 28 27 26 30 30 N 1.30836 * 108.20131 * 359.74179 * 29 28 27 31 31 H 1.08997 * 109.47220 * 64.59815 * 1 2 3 32 32 H 1.08998 * 109.47331 * 184.60186 * 1 2 3 33 33 H 1.09002 * 109.47243 * 304.59778 * 1 2 3 34 34 H 1.08990 * 109.58343 * 113.84395 * 7 6 4 35 35 H 1.09001 * 109.70129 * 353.48930 * 7 6 4 36 36 H 1.09003 * 109.49535 * 185.41352 * 8 7 6 37 37 H 1.08996 * 109.52917 * 65.33436 * 8 7 6 38 38 H 1.08997 * 109.46532 * 301.36189 * 9 8 7 39 39 H 1.08996 * 111.00315 * 324.20558 * 12 10 9 40 40 H 1.09002 * 111.00213 * 88.06284 * 12 10 9 41 41 H 1.08994 * 110.49973 * 278.45508 * 13 12 10 42 42 H 1.08999 * 110.33693 * 156.06043 * 13 12 10 43 43 H 0.97003 * 119.99050 * 5.66729 * 18 17 15 44 44 H 1.08994 * 109.88575 * 120.70175 * 23 14 13 45 45 H 1.09001 * 109.88301 * 241.72121 * 23 14 13 46 46 H 1.09001 * 109.49746 * 58.58318 * 24 9 8 47 47 H 1.09003 * 109.50250 * 178.68402 * 24 9 8 48 48 H 1.09001 * 109.58949 * 246.15433 * 25 6 4 49 49 H 1.09000 * 109.59018 * 6.58397 * 25 6 4 50 50 H 1.07995 * 126.12869 * 359.94690 * 27 26 2 51 51 H 1.08007 * 126.03144 * 179.97438 * 28 27 26 52 52 H 1.08006 * 125.89654 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 1.3290 -1.5247 -1.7901 6 7 3.2632 -0.4411 -1.7088 7 6 3.8084 -1.2003 -2.8424 8 6 5.1735 -1.7697 -2.4435 9 6 6.0742 -0.6318 -1.9578 10 6 7.4500 -1.1918 -1.5911 11 1 7.3669 -1.9140 -0.7789 12 6 8.4264 -0.0463 -1.2144 13 6 9.7986 -0.6868 -1.5511 14 7 9.5525 -1.4814 -2.7683 15 6 10.4978 -1.8399 -3.6920 16 1 10.1964 -2.2903 -4.6261 17 6 11.8433 -1.6243 -3.4276 18 7 12.2833 -1.6530 -2.1874 19 14 13.0297 -1.2935 -4.8320 20 1 12.2906 -1.3143 -6.1199 21 1 13.6603 0.0378 -4.6442 22 1 14.0817 -2.3415 -4.8487 23 6 8.1254 -1.8307 -2.8229 24 6 5.4475 0.0272 -0.7269 25 6 4.0854 0.6170 -1.1064 26 7 2.0183 -0.6904 1.1962 27 6 1.4402 -1.7558 1.7896 28 6 2.1967 -2.0926 2.8598 29 6 3.2743 -1.2031 2.9222 30 7 3.1715 -0.3659 1.9221 31 1 -0.3633 0.4408 -0.9283 32 1 -0.3634 -1.0243 0.0824 33 1 -0.3634 0.5835 0.8459 34 1 3.9248 -0.5403 -3.7020 35 1 3.1324 -2.0165 -3.0973 36 1 5.6319 -2.2537 -3.3059 37 1 5.0445 -2.4985 -1.6433 38 1 6.1830 0.1087 -2.7501 39 1 8.2443 0.8386 -1.8242 40 1 8.3583 0.1918 -0.1529 41 1 10.1287 -1.3321 -0.7371 42 1 10.5403 0.0876 -1.7471 43 1 11.6853 -1.9055 -1.4665 44 1 7.6815 -1.4346 -3.7361 45 1 8.0075 -2.9139 -2.7930 46 1 5.3154 -0.7182 0.0573 47 1 6.1008 0.8223 -0.3675 48 1 4.2244 1.4252 -1.8244 49 1 3.5915 0.9998 -0.2133 50 1 0.5356 -2.2505 1.4682 51 1 2.0026 -2.9049 3.5447 52 1 4.0581 -1.2091 3.6653 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039113936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:28 Heat of formation + Delta-G solvation = 47.833099 kcal Electronic energy + Delta-G solvation = -31654.024035 eV Core-core repulsion = 27654.970115 eV Total energy + Delta-G solvation = -3999.053919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 8.90 seconds Orbital eigenvalues (eV) -42.40369 -41.24546 -40.00752 -38.22761 -35.68851 -35.40159 -33.54577 -32.33699 -31.02042 -30.90923 -30.39570 -29.51312 -26.89240 -26.23507 -24.96652 -24.17798 -22.72408 -22.03818 -21.88393 -21.48614 -20.87211 -20.02000 -19.61008 -18.81481 -18.15808 -17.18478 -16.63568 -16.47265 -16.15235 -15.72312 -15.62922 -15.58003 -15.18663 -15.07942 -14.82917 -14.57772 -14.53935 -14.45234 -14.10393 -13.87183 -13.75865 -13.59273 -13.33164 -13.25710 -13.08187 -12.77228 -12.63074 -12.56681 -12.45008 -12.33413 -12.24269 -11.89601 -11.87314 -11.66606 -11.61879 -11.52217 -11.46820 -11.23091 -11.09740 -10.51385 -10.32417 -9.79384 -9.53682 -9.05221 -8.38913 -5.30248 0.73299 1.01842 1.55395 1.63862 1.80428 1.81722 1.92838 1.95979 2.62647 3.14816 3.18806 3.38038 3.48347 3.55846 3.64625 3.72425 3.84921 3.97998 3.99043 4.02565 4.13014 4.19825 4.29646 4.32690 4.37132 4.47160 4.48398 4.54089 4.64169 4.67716 4.68862 4.74312 4.76325 4.82620 4.86485 4.89451 4.91273 4.99933 5.02108 5.07829 5.11036 5.15527 5.20666 5.25719 5.32808 5.42684 5.51338 5.63177 5.73227 6.00815 6.19218 6.28762 6.72424 6.87161 6.88303 7.70321 8.28346 8.96278 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020049 B = 0.002417 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.270423 B =11580.878519 C =12343.490648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.145 3.855 3 H 0.137 0.863 4 C 0.501 3.499 5 O -0.566 6.566 6 N -0.597 5.597 7 C 0.115 3.885 8 C -0.122 4.122 9 C -0.063 4.063 10 C -0.076 4.076 11 H 0.064 0.936 12 C -0.109 4.109 13 C 0.144 3.856 14 N -0.630 5.630 15 C -0.349 4.349 16 H 0.060 0.940 17 C -0.081 4.081 18 N -0.947 5.947 19 Si 1.119 2.881 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.291 1.291 23 C 0.141 3.859 24 C -0.113 4.113 25 C 0.106 3.894 26 N -0.372 5.372 27 C 0.053 3.947 28 C -0.278 4.278 29 C 0.041 3.959 30 N -0.312 5.312 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.089 0.911 41 H -0.003 1.003 42 H 0.020 0.980 43 H 0.255 0.745 44 H 0.032 0.968 45 H 0.003 0.997 46 H 0.055 0.945 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.100 0.900 50 H 0.188 0.812 51 H 0.165 0.835 52 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.367 6.974 8.643 29.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.040 3.960 3 H 0.154 0.846 4 C 0.287 3.713 5 O -0.444 6.444 6 N -0.329 5.329 7 C -0.007 4.007 8 C -0.160 4.160 9 C -0.082 4.082 10 C -0.095 4.095 11 H 0.083 0.917 12 C -0.147 4.147 13 C 0.019 3.981 14 N -0.357 5.357 15 C -0.477 4.477 16 H 0.078 0.922 17 C -0.276 4.276 18 N -0.590 5.590 19 Si 0.943 3.057 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.218 1.218 23 C 0.016 3.984 24 C -0.151 4.151 25 C -0.015 4.015 26 N -0.157 5.157 27 C -0.092 4.092 28 C -0.307 4.307 29 C -0.145 4.145 30 N -0.133 5.133 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.015 0.985 42 H 0.038 0.962 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.021 0.979 46 H 0.073 0.927 47 H 0.108 0.892 48 H 0.110 0.890 49 H 0.118 0.882 50 H 0.205 0.795 51 H 0.182 0.818 52 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -25.659 7.964 7.146 27.801 hybrid contribution -1.241 -1.892 0.806 2.402 sum -26.900 6.073 7.952 28.701 Atomic orbital electron populations 1.22015 0.88696 1.04564 1.05107 1.21450 0.97890 0.97848 0.78858 0.84557 1.21197 0.81486 0.82763 0.85831 1.90692 1.56584 1.36022 1.61101 1.48283 1.15193 1.36322 1.33105 1.21605 0.94249 0.96451 0.88381 1.21878 0.94787 0.97928 1.01387 1.21041 0.91813 0.96942 0.98371 1.22037 0.94397 0.96844 0.96173 0.91727 1.22781 0.92874 0.97394 1.01681 1.21525 0.96353 0.92495 0.87728 1.44963 1.04687 1.60799 1.25295 1.20068 0.89054 1.42051 0.96530 0.92187 1.27117 0.97354 1.00100 1.03037 1.70849 1.37416 1.49727 1.01057 0.82834 0.73627 0.76789 0.72468 1.19824 1.21137 1.21784 1.21467 0.84115 0.95693 0.97146 1.21785 0.95739 1.00882 0.96701 1.22039 0.91129 0.89026 0.99355 1.48598 1.19893 1.25254 1.21938 1.22924 1.00664 0.90610 0.95008 1.21829 0.98929 1.06570 1.03409 1.24384 0.99650 0.93523 0.96992 1.77315 1.02490 1.25194 1.08252 0.88898 0.91062 0.88897 0.89611 0.90381 0.90808 0.93204 0.90257 0.90457 0.89256 0.98498 0.96172 0.93430 0.95026 0.97922 0.92651 0.89241 0.89046 0.88178 0.79484 0.81766 0.78094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.37 71.98 0.60 -0.94 16 2 C 0.14 2.17 2.84 44.25 0.13 2.29 16 3 H 0.14 1.56 6.33 -2.39 -0.02 1.54 16 4 C 0.50 10.55 7.14 87.66 0.63 11.18 16 5 O -0.57 -15.47 15.61 -3.02 -0.05 -15.52 16 6 N -0.60 -11.90 2.97 -818.91 -2.43 -14.33 16 7 C 0.12 2.48 6.41 86.36 0.55 3.03 16 8 C -0.12 -2.94 5.17 30.67 0.16 -2.78 16 9 C -0.06 -1.52 1.52 -10.77 -0.02 -1.53 16 10 C -0.08 -2.45 2.49 -9.60 -0.02 -2.47 16 11 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 12 C -0.11 -3.72 5.62 32.06 0.18 -3.54 16 13 C 0.14 7.01 5.22 86.93 0.45 7.47 16 14 N -0.63 -33.46 3.35 -691.55 -2.32 -35.78 16 15 C -0.35 -20.64 10.03 84.03 0.84 -19.79 16 16 H 0.06 3.54 7.99 -2.91 -0.02 3.52 16 17 C -0.08 -4.80 5.04 84.86 0.43 -4.38 16 18 N -0.95 -60.09 12.75 21.65 0.28 -59.82 16 19 Si 1.12 52.75 30.01 68.60 2.06 54.81 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 23 C 0.14 5.95 5.83 86.73 0.51 6.46 16 24 C -0.11 -2.26 5.21 30.67 0.16 -2.10 16 25 C 0.11 1.72 6.27 86.37 0.54 2.26 16 26 N -0.37 -6.58 3.51 -331.07 -1.16 -7.74 16 27 C 0.05 0.86 10.58 83.54 0.88 1.74 16 28 C -0.28 -4.39 10.80 21.99 0.24 -4.15 16 29 C 0.04 0.71 12.03 85.23 1.02 1.73 16 30 N -0.31 -6.16 11.87 -57.02 -0.68 -6.84 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.86 6.80 -2.39 -0.02 0.84 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 1.89 7.04 -2.39 -0.02 1.88 16 36 H 0.07 1.89 7.11 -2.39 -0.02 1.88 16 37 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 39 H 0.08 2.47 8.04 -2.39 -0.02 2.45 16 40 H 0.09 2.57 8.09 -2.39 -0.02 2.55 16 41 H 0.00 -0.14 6.96 -2.39 -0.02 -0.16 16 42 H 0.02 1.08 7.58 -2.39 -0.02 1.06 16 43 H 0.26 16.46 5.96 -92.71 -0.55 15.91 16 44 H 0.03 1.30 7.56 -2.39 -0.02 1.28 16 45 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 46 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.09 1.64 7.37 -2.39 -0.02 1.63 16 48 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.10 1.46 4.80 -2.39 -0.01 1.45 16 50 H 0.19 2.22 7.14 -2.91 -0.02 2.20 16 51 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 52 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -77.88 400.11 4.10 -73.78 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 1.12 Total: 16.96 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 7.28 Total: -5.53 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -6.31 Total: -124.51 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.05 Total: -15.52 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 2.06 Total: 54.81 kcal Total: -77.88 4.10 -73.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039113936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.615 kcal (2) G-P(sol) polarization free energy of solvation -77.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.90 seconds