Wall clock time and date at job start Wed Apr 1 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47619 * 2 1 4 4 C 1.50704 * 109.46638 * 239.99476 * 2 1 3 5 5 O 1.21280 * 120.00175 * 333.93151 * 4 2 1 6 6 N 1.34781 * 119.99395 * 153.93242 * 4 2 1 7 7 C 1.46920 * 120.63460 * 5.08268 * 6 4 2 8 8 C 1.53626 * 108.54149 * 126.36920 * 7 6 4 9 9 C 1.53040 * 109.24148 * 54.85995 * 8 7 6 10 10 C 1.52996 * 109.45221 * 178.49614 * 9 8 7 11 11 H 1.09000 * 110.64180 * 59.35631 * 10 9 8 12 12 C 1.55150 * 110.72195 * 182.50263 * 10 9 8 13 13 C 1.55126 * 101.48541 * 153.73543 * 12 10 9 14 14 N 1.47427 * 104.94056 * 323.22122 * 13 12 10 15 15 C 1.36937 * 125.64357 * 203.96867 * 14 13 12 16 16 H 1.08003 * 119.99600 * 180.02562 * 15 14 13 17 17 C 1.38809 * 120.00696 * 0.04044 * 15 14 13 18 18 N 1.31622 * 119.99514 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00318 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46883 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46637 * 120.00366 * 19 17 15 22 22 H 1.48496 * 109.47117 * 240.00214 * 19 17 15 23 23 C 1.47016 * 108.70543 * 24.00204 * 14 13 12 24 24 C 1.53041 * 109.53593 * 298.51335 * 9 8 7 25 25 C 1.46927 * 120.62350 * 185.36837 * 6 4 2 26 26 N 1.46506 * 109.47067 * 120.00373 * 2 1 3 27 27 C 1.34948 * 126.03881 * 34.99264 * 26 2 1 28 28 C 1.35313 * 107.74476 * 179.97438 * 27 26 2 29 29 C 1.39870 * 107.92011 * 359.97438 * 28 27 26 30 30 N 1.30835 * 108.20362 * 0.02562 * 29 28 27 31 31 H 1.09008 * 109.46754 * 295.04407 * 1 2 3 32 32 H 1.09000 * 109.47032 * 55.04193 * 1 2 3 33 33 H 1.08999 * 109.47458 * 175.04842 * 1 2 3 34 34 H 1.08994 * 109.58942 * 246.20732 * 7 6 4 35 35 H 1.09008 * 109.58491 * 6.63324 * 7 6 4 36 36 H 1.08998 * 109.63728 * 294.86610 * 8 7 6 37 37 H 1.09004 * 109.45718 * 174.74063 * 8 7 6 38 38 H 1.09000 * 109.45684 * 58.52665 * 9 8 7 39 39 H 1.08998 * 111.00589 * 271.93770 * 12 10 9 40 40 H 1.08998 * 111.00741 * 35.79390 * 12 10 9 41 41 H 1.09000 * 110.41790 * 204.29419 * 13 12 10 42 42 H 1.08999 * 110.30354 * 82.09207 * 13 12 10 43 43 H 0.97004 * 119.99689 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.88708 * 239.52592 * 23 14 13 45 45 H 1.09003 * 109.88138 * 118.35444 * 23 14 13 46 46 H 1.09003 * 109.49617 * 301.40906 * 24 9 8 47 47 H 1.09000 * 109.49465 * 181.31755 * 24 9 8 48 48 H 1.08995 * 109.59174 * 353.36977 * 25 6 4 49 49 H 1.09002 * 109.58780 * 113.65938 * 25 6 4 50 50 H 1.08000 * 126.12823 * 359.97438 * 27 26 2 51 51 H 1.07999 * 126.04009 * 180.02562 * 28 27 26 52 52 H 1.08004 * 125.89665 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2305 5 8 1.3448 -1.5534 -1.7671 6 7 3.2454 -0.4093 -1.7345 7 6 4.1354 0.5271 -1.0347 8 6 5.4950 -0.1563 -0.8236 9 6 6.0300 -0.6422 -2.1726 10 6 7.4015 -1.2904 -1.9732 11 1 7.3316 -2.1338 -1.2862 12 6 8.0000 -1.7381 -3.3328 13 6 9.5208 -1.6948 -3.0300 14 7 9.6993 -0.5287 -2.1459 15 6 10.8593 0.1813 -1.9859 16 1 10.8880 1.0237 -1.3106 17 6 11.9981 -0.1814 -2.6917 18 7 11.9629 -1.2075 -3.5153 19 14 13.5803 0.7876 -2.4739 20 1 13.3579 1.8858 -1.4994 21 1 14.6470 -0.1136 -1.9688 22 1 13.9937 1.3605 -3.7801 23 6 8.4260 -0.2548 -1.4639 24 6 5.0627 -1.6682 -2.7674 25 6 3.7005 -1.0063 -2.9975 26 7 2.0184 -0.6907 1.1962 27 6 1.4402 -1.7560 1.7895 28 6 2.1968 -2.0931 2.8595 29 6 3.2746 -1.2038 2.9218 30 7 3.1685 -0.3626 1.9254 31 1 -0.3633 0.4351 0.9311 32 1 -0.3633 0.5888 -0.8422 33 1 -0.3634 -1.0238 -0.0887 34 1 4.2650 1.4268 -1.6361 35 1 3.7030 0.7897 -0.0691 36 1 5.3773 -1.0063 -0.1514 37 1 6.1962 0.5565 -0.3896 38 1 6.1240 0.2047 -2.8523 39 1 7.6782 -2.7477 -3.5879 40 1 7.7404 -1.0352 -4.1244 41 1 10.0883 -1.5629 -3.9512 42 1 9.8313 -2.6075 -2.5215 43 1 12.7589 -1.4612 -4.0083 44 1 8.0858 0.7524 -1.7044 45 1 8.5530 -0.3580 -0.3862 46 1 4.9491 -2.5040 -2.0769 47 1 5.4560 -2.0311 -3.7169 48 1 2.9812 -1.7558 -3.3275 49 1 3.7930 -0.2295 -3.7565 50 1 0.5357 -2.2507 1.4680 51 1 2.0032 -2.9058 3.5439 52 1 4.0589 -1.2104 3.6643 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039113939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:11 Heat of formation + Delta-G solvation = 71.794702 kcal Electronic energy + Delta-G solvation = -31575.181474 eV Core-core repulsion = 27577.166608 eV Total energy + Delta-G solvation = -3998.014866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.67301 -40.30750 -38.55264 -36.69145 -34.88678 -33.74309 -31.78201 -31.28929 -30.30584 -29.76254 -29.20273 -27.71706 -25.90745 -24.68820 -23.74356 -23.10847 -21.75398 -21.27865 -20.52161 -19.97515 -19.34970 -19.15635 -17.91804 -17.42739 -16.81428 -16.32056 -15.38741 -15.03852 -14.89059 -14.80613 -14.49457 -14.12858 -14.10849 -13.91288 -13.69376 -13.63012 -13.23752 -13.03208 -12.92224 -12.74894 -12.73303 -12.45007 -12.29814 -11.92075 -11.69903 -11.56872 -11.35293 -11.17024 -11.01757 -10.89573 -10.87906 -10.78245 -10.53042 -10.39658 -10.05671 -9.86263 -9.76361 -9.69903 -9.57918 -9.40952 -8.86491 -8.79174 -8.61427 -6.78057 -5.61783 -3.03045 1.50421 1.73962 2.62314 2.65149 2.74054 3.40970 3.46284 3.48943 3.98276 3.99853 4.40781 4.51350 4.59075 4.72806 4.76418 4.83354 4.85890 5.01935 5.04301 5.16973 5.19267 5.29733 5.35413 5.41467 5.48287 5.49858 5.58359 5.59698 5.66756 5.69446 5.72704 5.79246 5.88331 5.92695 6.00866 6.05937 6.19061 6.20975 6.39805 6.41442 6.42610 6.49719 6.66052 6.66837 6.69898 6.84368 7.04984 7.08610 7.44062 7.57497 7.67318 7.75377 7.90372 8.40932 9.26318 9.87687 10.53541 11.42071 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017880 B = 0.002439 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.662012 B =11478.457545 C =12272.925538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.144 3.856 3 H 0.120 0.880 4 C 0.505 3.495 5 O -0.534 6.534 6 N -0.596 5.596 7 C 0.098 3.902 8 C -0.121 4.121 9 C -0.075 4.075 10 C -0.093 4.093 11 H 0.066 0.934 12 C -0.138 4.138 13 C 0.152 3.848 14 N -0.605 5.605 15 C -0.219 4.219 16 H 0.077 0.923 17 C -0.014 4.014 18 N -0.923 5.923 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.144 3.856 24 C -0.126 4.126 25 C 0.109 3.891 26 N -0.368 5.368 27 C 0.064 3.936 28 C -0.273 4.273 29 C 0.052 3.948 30 N -0.290 5.290 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.104 0.896 42 H 0.009 0.991 43 H 0.250 0.750 44 H 0.022 0.978 45 H 0.017 0.983 46 H 0.063 0.937 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.070 0.930 50 H 0.172 0.828 51 H 0.148 0.852 52 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.113 1.278 7.887 26.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.038 3.962 3 H 0.138 0.862 4 C 0.290 3.710 5 O -0.410 6.410 6 N -0.328 5.328 7 C -0.024 4.024 8 C -0.159 4.159 9 C -0.093 4.093 10 C -0.112 4.112 11 H 0.084 0.916 12 C -0.177 4.177 13 C 0.027 3.973 14 N -0.331 5.331 15 C -0.348 4.348 16 H 0.095 0.905 17 C -0.209 4.209 18 N -0.572 5.572 19 Si 0.744 3.256 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.018 3.982 24 C -0.164 4.164 25 C -0.013 4.013 26 N -0.152 5.152 27 C -0.081 4.081 28 C -0.302 4.302 29 C -0.134 4.134 30 N -0.111 5.111 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.122 0.878 42 H 0.027 0.973 43 H 0.061 0.939 44 H 0.039 0.961 45 H 0.035 0.965 46 H 0.082 0.918 47 H 0.098 0.902 48 H 0.108 0.892 49 H 0.089 0.911 50 H 0.189 0.811 51 H 0.166 0.834 52 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -24.783 1.922 6.802 25.771 hybrid contribution 0.654 -0.321 0.632 0.964 sum -24.129 1.601 7.434 25.299 Atomic orbital electron populations 1.22026 0.90304 1.04914 1.03822 1.21351 0.96733 0.97698 0.80414 0.86218 1.20646 0.81652 0.83220 0.85455 1.90700 1.56548 1.32248 1.61526 1.48203 1.15420 1.45093 1.24093 1.22124 0.91163 0.91554 0.97557 1.21952 0.94906 1.01112 0.97907 1.21158 0.94252 0.97769 0.96165 1.22152 0.92725 0.98067 0.98209 0.91560 1.23068 0.99869 0.99183 0.95572 1.21940 0.89593 0.88478 0.97299 1.44531 1.06407 1.33506 1.48692 1.19131 0.86742 1.08385 1.20505 0.90538 1.24790 0.98067 0.98446 0.99591 1.69828 1.27653 1.28515 1.31192 0.86011 0.83394 0.78955 0.77252 1.20546 1.21805 1.21786 1.21296 0.86743 0.95351 0.94842 1.21946 0.93727 0.98539 1.02163 1.21729 0.96754 0.98268 0.84500 1.48522 1.20139 1.24822 1.21739 1.22521 0.99985 0.90749 0.94870 1.21526 0.99163 1.06341 1.03173 1.23952 0.98980 0.93578 0.96921 1.77348 1.01954 1.24185 1.07572 0.90582 0.89598 0.90157 0.91155 0.88712 0.91608 0.90100 0.90959 0.92691 0.92313 0.87810 0.97349 0.93874 0.96057 0.96530 0.91840 0.90166 0.89211 0.91139 0.81119 0.83432 0.79812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.37 37.16 0.31 -0.68 16 2 C 0.14 1.27 2.76 -69.08 -0.19 1.08 16 3 H 0.12 0.91 6.69 -51.93 -0.35 0.56 16 4 C 0.51 5.85 7.12 -10.98 -0.08 5.77 16 5 O -0.53 -7.58 15.42 5.56 0.09 -7.50 16 6 N -0.60 -6.72 2.97 -172.50 -0.51 -7.23 16 7 C 0.10 1.03 6.18 -3.49 -0.02 1.01 16 8 C -0.12 -1.51 5.22 -26.39 -0.14 -1.64 16 9 C -0.07 -1.02 1.53 -90.58 -0.14 -1.15 16 10 C -0.09 -1.60 2.48 -88.79 -0.22 -1.82 16 11 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 12 C -0.14 -2.62 5.51 -24.47 -0.13 -2.75 16 13 C 0.15 3.76 5.89 -2.41 -0.01 3.75 16 14 N -0.61 -15.81 3.40 -169.94 -0.58 -16.39 16 15 C -0.22 -6.21 10.27 -15.06 -0.15 -6.37 16 16 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 17 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 18 N -0.92 -27.34 10.09 55.49 0.56 -26.78 16 19 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 C 0.14 3.01 5.88 -3.06 -0.02 2.99 16 24 C -0.13 -1.55 5.19 -26.61 -0.14 -1.69 16 25 C 0.11 1.24 6.44 -3.71 -0.02 1.22 16 26 N -0.37 -3.70 3.50 -55.99 -0.20 -3.89 16 27 C 0.06 0.58 10.60 -17.22 -0.18 0.40 16 28 C -0.27 -2.42 10.80 -40.01 -0.43 -2.85 16 29 C 0.05 0.51 12.03 -17.37 -0.21 0.30 16 30 N -0.29 -3.25 11.19 30.63 0.34 -2.90 16 31 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.58 6.96 -51.93 -0.36 0.22 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.96 4.34 -51.92 -0.23 0.74 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.04 7.27 -51.93 -0.38 0.67 16 38 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 39 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.06 1.09 8.05 -51.93 -0.42 0.68 16 41 H 0.10 2.89 5.87 -51.93 -0.30 2.58 16 42 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.02 0.44 7.67 -51.93 -0.40 0.04 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.08 0.97 7.27 -51.93 -0.38 0.59 16 48 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 49 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.17 1.17 7.40 -52.49 -0.39 0.78 16 51 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 52 H 0.18 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 399.43 15.07 6.02 6.02 Total: -1.00 -33.61 399.43 -9.78 -43.39 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.60 Total: 0.92 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -1.88 Total: -2.93 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.38 Total: -57.20 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.09 Total: -7.50 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.61 -9.78 -43.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039113939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.182 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds