Wall clock time and date at job start Wed Apr 1 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47619 * 2 1 4 4 C 1.50704 * 109.46638 * 239.99476 * 2 1 3 5 5 O 1.21280 * 120.00175 * 333.93151 * 4 2 1 6 6 N 1.34781 * 119.99395 * 153.93242 * 4 2 1 7 7 C 1.46920 * 120.63460 * 5.08268 * 6 4 2 8 8 C 1.53626 * 108.54149 * 126.36920 * 7 6 4 9 9 C 1.53040 * 109.24148 * 54.85995 * 8 7 6 10 10 C 1.52996 * 109.45221 * 178.49614 * 9 8 7 11 11 H 1.09000 * 110.64180 * 59.35631 * 10 9 8 12 12 C 1.55150 * 110.72195 * 182.50263 * 10 9 8 13 13 C 1.55126 * 101.48541 * 153.73543 * 12 10 9 14 14 N 1.47427 * 104.94056 * 323.22122 * 13 12 10 15 15 C 1.36937 * 125.64357 * 203.96867 * 14 13 12 16 16 H 1.08003 * 119.99600 * 180.02562 * 15 14 13 17 17 C 1.38809 * 120.00696 * 0.04044 * 15 14 13 18 18 N 1.31622 * 119.99514 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00318 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46883 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46637 * 120.00366 * 19 17 15 22 22 H 1.48496 * 109.47117 * 240.00214 * 19 17 15 23 23 C 1.47016 * 108.70543 * 24.00204 * 14 13 12 24 24 C 1.53041 * 109.53593 * 298.51335 * 9 8 7 25 25 C 1.46927 * 120.62350 * 185.36837 * 6 4 2 26 26 N 1.46506 * 109.47067 * 120.00373 * 2 1 3 27 27 C 1.34948 * 126.03881 * 34.99264 * 26 2 1 28 28 C 1.35313 * 107.74476 * 179.97438 * 27 26 2 29 29 C 1.39870 * 107.92011 * 359.97438 * 28 27 26 30 30 N 1.30835 * 108.20362 * 0.02562 * 29 28 27 31 31 H 1.09008 * 109.46754 * 295.04407 * 1 2 3 32 32 H 1.09000 * 109.47032 * 55.04193 * 1 2 3 33 33 H 1.08999 * 109.47458 * 175.04842 * 1 2 3 34 34 H 1.08994 * 109.58942 * 246.20732 * 7 6 4 35 35 H 1.09008 * 109.58491 * 6.63324 * 7 6 4 36 36 H 1.08998 * 109.63728 * 294.86610 * 8 7 6 37 37 H 1.09004 * 109.45718 * 174.74063 * 8 7 6 38 38 H 1.09000 * 109.45684 * 58.52665 * 9 8 7 39 39 H 1.08998 * 111.00589 * 271.93770 * 12 10 9 40 40 H 1.08998 * 111.00741 * 35.79390 * 12 10 9 41 41 H 1.09000 * 110.41790 * 204.29419 * 13 12 10 42 42 H 1.08999 * 110.30354 * 82.09207 * 13 12 10 43 43 H 0.97004 * 119.99689 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.88708 * 239.52592 * 23 14 13 45 45 H 1.09003 * 109.88138 * 118.35444 * 23 14 13 46 46 H 1.09003 * 109.49617 * 301.40906 * 24 9 8 47 47 H 1.09000 * 109.49465 * 181.31755 * 24 9 8 48 48 H 1.08995 * 109.59174 * 353.36977 * 25 6 4 49 49 H 1.09002 * 109.58780 * 113.65938 * 25 6 4 50 50 H 1.08000 * 126.12823 * 359.97438 * 27 26 2 51 51 H 1.07999 * 126.04009 * 180.02562 * 28 27 26 52 52 H 1.08004 * 125.89665 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2305 5 8 1.3448 -1.5534 -1.7671 6 7 3.2454 -0.4093 -1.7345 7 6 4.1354 0.5271 -1.0347 8 6 5.4950 -0.1563 -0.8236 9 6 6.0300 -0.6422 -2.1726 10 6 7.4015 -1.2904 -1.9732 11 1 7.3316 -2.1338 -1.2862 12 6 8.0000 -1.7381 -3.3328 13 6 9.5208 -1.6948 -3.0300 14 7 9.6993 -0.5287 -2.1459 15 6 10.8593 0.1813 -1.9859 16 1 10.8880 1.0237 -1.3106 17 6 11.9981 -0.1814 -2.6917 18 7 11.9629 -1.2075 -3.5153 19 14 13.5803 0.7876 -2.4739 20 1 13.3579 1.8858 -1.4994 21 1 14.6470 -0.1136 -1.9688 22 1 13.9937 1.3605 -3.7801 23 6 8.4260 -0.2548 -1.4639 24 6 5.0627 -1.6682 -2.7674 25 6 3.7005 -1.0063 -2.9975 26 7 2.0184 -0.6907 1.1962 27 6 1.4402 -1.7560 1.7895 28 6 2.1968 -2.0931 2.8595 29 6 3.2746 -1.2038 2.9218 30 7 3.1685 -0.3626 1.9254 31 1 -0.3633 0.4351 0.9311 32 1 -0.3633 0.5888 -0.8422 33 1 -0.3634 -1.0238 -0.0887 34 1 4.2650 1.4268 -1.6361 35 1 3.7030 0.7897 -0.0691 36 1 5.3773 -1.0063 -0.1514 37 1 6.1962 0.5565 -0.3896 38 1 6.1240 0.2047 -2.8523 39 1 7.6782 -2.7477 -3.5879 40 1 7.7404 -1.0352 -4.1244 41 1 10.0883 -1.5629 -3.9512 42 1 9.8313 -2.6075 -2.5215 43 1 12.7589 -1.4612 -4.0083 44 1 8.0858 0.7524 -1.7044 45 1 8.5530 -0.3580 -0.3862 46 1 4.9491 -2.5040 -2.0769 47 1 5.4560 -2.0311 -3.7169 48 1 2.9812 -1.7558 -3.3275 49 1 3.7930 -0.2295 -3.7565 50 1 0.5357 -2.2507 1.4680 51 1 2.0032 -2.9058 3.5439 52 1 4.0589 -1.2104 3.6643 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039113939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:07 Heat of formation + Delta-G solvation = 52.563089 kcal Electronic energy + Delta-G solvation = -31576.015419 eV Core-core repulsion = 27577.166608 eV Total energy + Delta-G solvation = -3998.848811 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 7.20 seconds Orbital eigenvalues (eV) -42.39584 -41.20115 -39.85806 -38.06151 -35.63589 -35.22623 -33.47481 -32.24444 -31.12630 -30.89712 -30.37683 -29.26041 -27.21162 -26.01781 -24.95199 -24.14234 -22.67677 -22.00690 -21.84156 -21.44786 -20.78104 -19.97745 -18.87976 -18.76528 -18.13979 -17.20522 -16.86816 -16.39910 -16.05570 -15.75840 -15.63523 -15.56829 -15.05113 -14.98594 -14.63441 -14.54959 -14.28061 -14.19230 -14.05370 -13.80131 -13.53641 -13.44755 -13.33105 -13.28966 -13.13207 -12.93595 -12.74173 -12.57016 -12.49594 -12.25615 -12.22410 -11.96653 -11.85538 -11.65430 -11.61100 -11.43861 -11.30310 -11.11651 -10.97640 -10.74765 -10.33444 -9.76662 -9.52121 -8.87765 -7.77404 -5.21851 0.75972 1.02236 1.45676 1.46842 1.57329 1.82905 1.95143 1.96877 2.49393 3.20390 3.31804 3.39899 3.63638 3.66287 3.73424 3.83561 3.88666 3.99354 4.05908 4.14833 4.16921 4.26304 4.38674 4.40906 4.43817 4.53797 4.56152 4.66195 4.69365 4.71619 4.77715 4.81786 4.83595 4.88510 4.90738 4.94039 5.02919 5.09003 5.11805 5.16265 5.16600 5.21338 5.37894 5.44701 5.48113 5.54914 5.66864 5.74121 5.82943 6.02266 6.21048 6.31600 6.73377 6.89121 7.11268 7.79583 8.44058 9.24768 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017880 B = 0.002439 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.662012 B =11478.457545 C =12272.925538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.144 3.856 3 H 0.133 0.867 4 C 0.502 3.498 5 O -0.564 6.564 6 N -0.598 5.598 7 C 0.105 3.895 8 C -0.114 4.114 9 C -0.064 4.064 10 C -0.077 4.077 11 H 0.063 0.937 12 C -0.121 4.121 13 C 0.152 3.848 14 N -0.629 5.629 15 C -0.237 4.237 16 H 0.080 0.920 17 C -0.071 4.071 18 N -0.951 5.951 19 Si 0.981 3.019 20 H -0.266 1.266 21 H -0.293 1.293 22 H -0.290 1.290 23 C 0.141 3.859 24 C -0.118 4.118 25 C 0.112 3.888 26 N -0.374 5.374 27 C 0.055 3.945 28 C -0.279 4.279 29 C 0.042 3.958 30 N -0.318 5.318 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.071 0.929 42 H -0.022 1.022 43 H 0.246 0.754 44 H 0.031 0.969 45 H 0.013 0.987 46 H 0.050 0.950 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.190 0.810 51 H 0.166 0.834 52 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.852 2.484 8.423 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.039 3.961 3 H 0.151 0.849 4 C 0.289 3.711 5 O -0.442 6.442 6 N -0.330 5.330 7 C -0.017 4.017 8 C -0.152 4.152 9 C -0.083 4.083 10 C -0.096 4.096 11 H 0.081 0.919 12 C -0.159 4.159 13 C 0.027 3.973 14 N -0.355 5.355 15 C -0.366 4.366 16 H 0.098 0.902 17 C -0.263 4.263 18 N -0.601 5.601 19 Si 0.809 3.191 20 H -0.190 1.190 21 H -0.221 1.221 22 H -0.217 1.217 23 C 0.016 3.984 24 C -0.156 4.156 25 C -0.010 4.010 26 N -0.158 5.158 27 C -0.090 4.090 28 C -0.308 4.308 29 C -0.144 4.144 30 N -0.138 5.138 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.089 0.911 42 H -0.004 1.004 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.031 0.969 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.106 0.894 50 H 0.206 0.794 51 H 0.184 0.816 52 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -26.545 3.146 7.363 27.727 hybrid contribution 1.212 -0.743 0.513 1.511 sum -25.334 2.402 7.875 26.638 Atomic orbital electron populations 1.22030 0.88570 1.04794 1.05077 1.21475 0.98028 0.97702 0.78896 0.84907 1.21137 0.81351 0.82776 0.85881 1.90684 1.57356 1.33600 1.62577 1.48300 1.15578 1.45043 1.24043 1.22110 0.89682 0.91616 0.98277 1.21846 0.96081 1.00587 0.96701 1.21047 0.92197 0.97921 0.97105 1.22040 0.93761 0.97103 0.96716 0.91899 1.22898 0.95428 1.00923 0.96694 1.21753 0.93267 0.87032 0.95266 1.44870 1.07504 1.33527 1.49551 1.19510 0.87986 1.08687 1.20381 0.90187 1.25663 1.01332 0.99649 0.99641 1.70086 1.28081 1.29954 1.31996 0.84969 0.79060 0.77787 0.77290 1.18999 1.22056 1.21651 1.21467 0.85746 0.96917 0.94266 1.21854 0.94078 0.97723 1.01945 1.21700 0.95634 0.98632 0.85071 1.48643 1.20054 1.25233 1.21914 1.22943 1.00599 0.90544 0.94867 1.21836 0.98797 1.06640 1.03480 1.24387 0.99652 0.93429 0.96978 1.77286 1.02852 1.25240 1.08439 0.89104 0.88517 0.90938 0.89281 0.88144 0.93114 0.90458 0.90465 0.90432 0.91469 0.91135 1.00377 0.94412 0.95087 0.96937 0.93102 0.89579 0.89945 0.89386 0.79350 0.81628 0.78123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.37 71.98 0.60 -1.00 16 2 C 0.14 2.28 2.76 44.25 0.12 2.40 16 3 H 0.13 1.70 6.69 -2.39 -0.02 1.69 16 4 C 0.50 10.80 7.12 87.66 0.62 11.42 16 5 O -0.56 -15.37 15.42 -3.03 -0.05 -15.41 16 6 N -0.60 -12.29 2.97 -818.07 -2.43 -14.71 16 7 C 0.11 1.96 6.18 86.51 0.53 2.49 16 8 C -0.11 -2.65 5.22 30.82 0.16 -2.49 16 9 C -0.06 -1.61 1.53 -10.77 -0.02 -1.63 16 10 C -0.08 -2.59 2.48 -9.61 -0.02 -2.61 16 11 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 12 C -0.12 -4.48 5.51 32.06 0.18 -4.31 16 13 C 0.15 7.73 5.89 86.93 0.51 8.24 16 14 N -0.63 -33.28 3.40 -691.56 -2.35 -35.63 16 15 C -0.24 -13.57 10.27 84.03 0.86 -12.71 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 17 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 18 N -0.95 -57.95 10.09 21.65 0.22 -57.73 16 19 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 23 C 0.14 5.85 5.88 86.73 0.51 6.36 16 24 C -0.12 -2.68 5.19 30.67 0.16 -2.52 16 25 C 0.11 2.29 6.44 86.36 0.56 2.85 16 26 N -0.37 -6.93 3.50 -331.04 -1.16 -8.09 16 27 C 0.06 0.92 10.60 83.54 0.89 1.81 16 28 C -0.28 -4.51 10.80 21.99 0.24 -4.27 16 29 C 0.04 0.76 12.03 85.24 1.02 1.78 16 30 N -0.32 -6.69 11.19 -57.02 -0.64 -7.33 16 31 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.93 6.96 -2.39 -0.02 0.91 16 34 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 1.82 4.34 -2.38 -0.01 1.81 16 36 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.87 7.27 -2.38 -0.02 1.85 16 38 H 0.08 1.95 8.12 -2.39 -0.02 1.93 16 39 H 0.08 2.53 8.08 -2.39 -0.02 2.51 16 40 H 0.07 2.39 8.05 -2.39 -0.02 2.38 16 41 H 0.07 4.07 5.87 -2.39 -0.01 4.06 16 42 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 43 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 44 H 0.03 1.24 7.67 -2.39 -0.02 1.22 16 45 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.09 1.87 7.27 -2.39 -0.02 1.86 16 48 H 0.08 1.87 7.00 -2.39 -0.02 1.85 16 49 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.19 2.26 7.40 -2.91 -0.02 2.24 16 51 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 52 H 0.20 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -74.02 399.43 3.92 -70.09 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.90 Total: 18.25 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 7.39 Total: 2.19 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -6.35 Total: -123.49 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.05 Total: -15.41 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -74.02 3.92 -70.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039113939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.656 kcal (2) G-P(sol) polarization free energy of solvation -74.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.20 seconds