Wall clock time and date at job start Wed Apr 1 2020 05:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47085 * 2 1 4 4 C 1.53001 * 109.47324 * 240.00094 * 2 1 3 5 5 C 1.50700 * 109.47116 * 64.99913 * 4 2 1 6 6 O 1.21280 * 119.99775 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99942 * 180.02562 * 5 4 2 8 8 C 1.46952 * 120.44684 * 0.02562 * 7 5 4 9 9 C 1.54064 * 108.50130 * 125.62468 * 8 7 5 10 10 H 1.09000 * 110.71416 * 172.22498 * 9 8 7 11 11 C 1.53367 * 108.80977 * 294.57984 * 9 8 7 12 12 C 1.53018 * 109.24512 * 60.02181 * 11 9 8 13 13 C 1.52561 * 109.66194 * 60.81794 * 12 11 9 14 14 C 1.53370 * 109.33387 * 299.16212 * 13 12 11 15 15 H 1.09004 * 111.08121 * 177.90026 * 14 13 12 16 16 C 1.46957 * 120.44460 * 179.97438 * 7 5 4 17 17 N 1.47565 * 107.51869 * 51.29682 * 9 8 7 18 18 C 1.36938 * 121.61068 * 120.51967 * 17 9 8 19 19 H 1.08000 * 120.00324 * 203.60228 * 18 17 9 20 20 C 1.38813 * 120.00042 * 23.60929 * 18 17 9 21 21 N 1.31616 * 119.99908 * 27.99275 * 20 18 17 22 22 Si 1.86797 * 120.00151 * 207.99595 * 20 18 17 23 23 H 1.48506 * 109.46832 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47521 * 119.99624 * 22 20 18 25 25 H 1.48503 * 109.47017 * 239.99946 * 22 20 18 26 26 C 1.50696 * 109.47459 * 119.99793 * 2 1 3 27 27 C 1.39870 * 126.03902 * 60.02462 * 26 2 1 28 28 N 1.30834 * 108.20669 * 179.97438 * 27 26 2 29 29 N 1.40093 * 108.20280 * 0.02562 * 28 27 26 30 30 C 1.46494 * 126.03690 * 180.02562 * 29 28 27 31 31 C 1.34943 * 107.92296 * 359.75215 * 29 28 27 32 32 H 1.08997 * 109.47543 * 299.99843 * 1 2 3 33 33 H 1.09005 * 109.47114 * 60.00239 * 1 2 3 34 34 H 1.09001 * 109.47085 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.46831 * 304.99733 * 4 2 1 36 36 H 1.08997 * 109.47192 * 184.99699 * 4 2 1 37 37 H 1.08990 * 109.62344 * 245.46703 * 8 7 5 38 38 H 1.09000 * 109.61464 * 5.84033 * 8 7 5 39 39 H 1.08999 * 109.51030 * 179.97438 * 11 9 8 40 40 H 1.09004 * 109.50529 * 300.04827 * 11 9 8 41 41 H 1.08996 * 109.41391 * 180.68507 * 12 11 9 42 42 H 1.08990 * 109.41614 * 300.55472 * 12 11 9 43 43 H 1.09010 * 109.38021 * 179.26242 * 13 12 11 44 44 H 1.08999 * 109.56465 * 59.18410 * 13 12 11 45 45 H 1.09006 * 109.62613 * 114.56809 * 16 7 5 46 46 H 1.08997 * 109.78637 * 354.08839 * 16 7 5 47 47 H 0.96995 * 120.00349 * 5.74852 * 21 20 18 48 48 H 1.08004 * 125.89499 * 0.02562 * 27 26 2 49 49 H 1.09000 * 109.47457 * 89.97131 * 30 29 28 50 50 H 1.09001 * 109.47383 * 209.97464 * 30 29 28 51 51 H 1.09000 * 109.47215 * 329.97139 * 30 29 28 52 52 H 1.08006 * 126.12618 * 180.23823 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 8 1.0109 1.0869 -2.3633 7 7 1.9845 -0.3919 -3.7001 8 6 2.7469 -1.6393 -3.8488 9 6 1.9771 -2.5718 -4.8036 10 1 2.5736 -3.4507 -5.0482 11 6 0.6516 -2.9708 -4.1432 12 6 -0.1734 -1.7120 -3.8673 13 6 -0.4737 -0.9969 -5.1810 14 6 0.8446 -0.5861 -5.8484 15 1 0.6641 -0.1043 -6.8094 16 6 1.6004 0.3590 -4.9036 17 7 1.6650 -1.8004 -6.0222 18 6 2.1103 -2.1954 -7.2554 19 1 2.2133 -1.4711 -8.0499 20 6 2.4292 -3.5268 -7.4845 21 7 1.8317 -4.4748 -6.7941 22 14 3.7063 -3.9731 -8.7726 23 1 4.2255 -2.7337 -9.4049 24 1 4.8250 -4.7062 -8.1274 25 1 3.0833 -4.8339 -9.8099 26 6 2.0324 -0.7103 1.2304 27 6 1.7740 -2.0409 1.5756 28 7 2.3784 -2.2942 2.7080 29 7 3.0411 -1.1308 3.1202 30 6 3.8410 -0.9801 4.3381 31 6 2.8174 -0.1752 2.1940 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.6055 -1.7198 -1.2951 36 1 3.1263 -0.7994 -1.2056 37 1 3.7310 -1.4198 -4.2625 38 1 2.8572 -2.1189 -2.8762 39 1 0.0970 -3.6310 -4.8099 40 1 0.8535 -3.4874 -3.2048 41 1 -1.1110 -1.9914 -3.3868 42 1 0.3873 -1.0483 -3.2092 43 1 -1.0725 -0.1083 -4.9805 44 1 -1.0241 -1.6655 -5.8430 45 1 2.4942 0.7358 -5.4009 46 1 0.9556 1.1934 -4.6277 47 1 1.1104 -4.2505 -6.1857 48 1 1.1790 -2.7389 1.0054 49 1 4.8784 -1.2389 4.1259 50 1 3.7874 0.0526 4.6827 51 1 3.4525 -1.6420 5.1122 52 1 3.1954 0.8363 2.2185 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039794485.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:45 Heat of formation + Delta-G solvation = 89.676730 kcal Electronic energy + Delta-G solvation = -32636.880336 eV Core-core repulsion = 28639.640893 eV Total energy + Delta-G solvation = -3997.239443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.43293 -40.72434 -38.10732 -35.31338 -34.14389 -33.04553 -32.88413 -32.04922 -30.22840 -29.81461 -28.18733 -26.69020 -26.29986 -25.62137 -23.57408 -22.68691 -21.50919 -21.34690 -21.18625 -19.98539 -19.08090 -18.53517 -17.38462 -16.85213 -16.27010 -15.67171 -15.55700 -15.11797 -14.64416 -14.44865 -14.42289 -14.05622 -13.85705 -13.63759 -13.37356 -13.21476 -13.13840 -12.89392 -12.77738 -12.67010 -12.53985 -12.34709 -12.17799 -12.09420 -11.61323 -11.48028 -11.16585 -11.04133 -10.97081 -10.74769 -10.54127 -10.46152 -10.27782 -10.24589 -10.17181 -9.94010 -9.64393 -9.57060 -9.40847 -9.15963 -8.48742 -8.47086 -7.93524 -6.82656 -6.11483 -3.22955 1.73047 2.34846 2.67076 2.94022 3.42617 3.50130 3.51041 3.65226 4.28342 4.53739 4.64360 4.76114 4.81982 4.88103 4.99467 5.05976 5.09405 5.17783 5.29513 5.35694 5.55073 5.58497 5.60902 5.63508 5.66279 5.69084 5.70252 5.75420 5.77674 5.89752 5.97432 6.06779 6.15546 6.18491 6.27288 6.28741 6.36617 6.38188 6.44023 6.48917 6.54608 6.60222 6.71347 6.82564 6.82822 6.88157 6.98843 7.12561 7.18566 7.54958 7.85501 7.91934 8.51584 8.52905 9.04249 9.77794 10.24759 11.17765 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.002982 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.008468 B = 9388.685368 C =10164.116025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.008 3.992 3 H 0.080 0.920 4 C -0.134 4.134 5 C 0.515 3.485 6 O -0.553 6.553 7 N -0.591 5.591 8 C 0.092 3.908 9 C 0.155 3.845 10 H 0.109 0.891 11 C -0.125 4.125 12 C -0.137 4.137 13 C -0.124 4.124 14 C 0.154 3.846 15 H 0.077 0.923 16 C 0.102 3.898 17 N -0.586 5.586 18 C -0.344 4.344 19 H 0.060 0.940 20 C -0.024 4.024 21 N -0.917 5.917 22 Si 1.064 2.936 23 H -0.293 1.293 24 H -0.290 1.290 25 H -0.295 1.295 26 C -0.224 4.224 27 C 0.057 3.943 28 N -0.299 5.299 29 N -0.381 5.381 30 C 0.103 3.897 31 C 0.053 3.947 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.034 0.966 42 H 0.086 0.914 43 H 0.045 0.955 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.274 0.726 48 H 0.181 0.819 49 H 0.073 0.927 50 H 0.085 0.915 51 H 0.087 0.913 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.405 8.145 18.061 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.012 4.012 3 H 0.098 0.902 4 C -0.174 4.174 5 C 0.305 3.695 6 O -0.433 6.433 7 N -0.324 5.324 8 C -0.033 4.033 9 C 0.047 3.953 10 H 0.126 0.874 11 C -0.164 4.164 12 C -0.175 4.175 13 C -0.163 4.163 14 C 0.046 3.954 15 H 0.095 0.905 16 C -0.022 4.022 17 N -0.308 5.308 18 C -0.473 4.473 19 H 0.078 0.922 20 C -0.226 4.226 21 N -0.559 5.559 22 Si 0.894 3.106 23 H -0.219 1.219 24 H -0.217 1.217 25 H -0.223 1.223 26 C -0.236 4.236 27 C -0.129 4.129 28 N -0.120 5.120 29 N -0.164 5.164 30 C -0.038 4.038 31 C -0.092 4.092 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.101 0.899 47 H 0.087 0.913 48 H 0.198 0.802 49 H 0.091 0.909 50 H 0.104 0.896 51 H 0.106 0.894 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.298 6.565 18.417 19.828 hybrid contribution -0.990 1.672 -0.061 1.945 sum 2.308 8.237 18.356 20.252 Atomic orbital electron populations 1.21922 0.94168 1.01572 1.02711 1.19113 0.96003 0.97948 0.88176 0.90208 1.21808 1.02728 1.00404 0.92418 1.20351 0.79177 0.85395 0.84541 1.90622 1.41138 1.25212 1.86335 1.48177 1.54044 1.24574 1.05592 1.22578 0.95328 0.84961 1.00405 1.21388 0.93782 0.94690 0.85437 0.87377 1.22010 0.98298 0.96918 0.99200 1.22021 0.98933 0.98285 0.98306 1.21855 0.98164 0.99079 0.97185 1.21212 0.89486 0.88929 0.95783 0.90452 1.22161 0.99621 0.94949 0.85469 1.44536 1.57624 1.25914 1.02766 1.20013 1.43287 0.94357 0.89640 0.92193 1.25705 1.02637 0.91409 1.02877 1.70742 1.22634 1.33950 1.28530 0.83550 0.76466 0.74973 0.75586 1.21922 1.21705 1.22274 1.20125 1.07523 0.95347 1.00561 1.23779 0.99008 0.96154 0.93986 1.77360 1.13495 1.05837 1.15340 1.48432 1.40449 1.08504 1.19006 1.21811 0.94592 1.03386 0.84033 1.22327 1.00342 0.95708 0.90837 0.93275 0.90356 0.93292 0.88873 0.89261 0.91575 0.90817 0.91779 0.93640 0.94724 0.89651 0.93632 0.92675 0.92119 0.89942 0.91331 0.80158 0.90875 0.89640 0.89439 0.81111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.82 37.16 0.33 -1.46 16 2 C 0.01 0.09 2.40 -91.77 -0.22 -0.13 16 3 H 0.08 0.96 7.92 -51.93 -0.41 0.55 16 4 C -0.13 -1.67 3.34 -27.88 -0.09 -1.77 16 5 C 0.52 8.11 4.74 -10.99 -0.05 8.06 16 6 O -0.55 -9.89 13.36 5.56 0.07 -9.81 16 7 N -0.59 -9.96 1.65 -171.98 -0.28 -10.25 16 8 C 0.09 1.57 5.82 -3.24 -0.02 1.56 16 9 C 0.15 3.23 2.49 -66.60 -0.17 3.07 16 10 H 0.11 2.61 5.90 -51.93 -0.31 2.30 16 11 C -0.12 -2.42 5.33 -26.53 -0.14 -2.56 16 12 C -0.14 -2.49 5.54 -26.95 -0.15 -2.64 16 13 C -0.12 -2.36 5.55 -26.76 -0.15 -2.51 16 14 C 0.15 3.08 3.62 -66.88 -0.24 2.84 16 15 H 0.08 1.57 8.01 -51.93 -0.42 1.15 16 16 C 0.10 1.83 5.88 -3.52 -0.02 1.81 16 17 N -0.59 -13.48 2.43 -155.19 -0.38 -13.85 16 18 C -0.34 -9.01 9.62 -15.06 -0.14 -9.16 16 19 H 0.06 1.60 7.97 -52.49 -0.42 1.18 16 20 C -0.02 -0.65 4.75 -17.43 -0.08 -0.74 16 21 N -0.92 -25.84 12.20 55.49 0.68 -25.17 16 22 Si 1.06 24.33 30.00 -169.99 -5.10 19.23 16 23 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 26 C -0.22 -2.46 4.80 -105.05 -0.50 -2.97 16 27 C 0.06 0.66 11.54 -17.37 -0.20 0.46 16 28 N -0.30 -3.75 12.58 30.62 0.39 -3.37 16 29 N -0.38 -3.82 4.01 -68.17 -0.27 -4.10 16 30 C 0.10 0.58 11.47 59.84 0.69 1.27 16 31 C 0.05 0.51 11.38 -17.22 -0.20 0.32 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.13 5.95 -51.93 -0.31 0.83 16 34 H 0.05 0.57 8.03 -51.93 -0.42 0.15 16 35 H 0.09 1.13 7.68 -51.93 -0.40 0.73 16 36 H 0.09 1.04 7.92 -51.93 -0.41 0.63 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.07 5.90 -51.93 -0.31 0.76 16 39 H 0.06 1.42 6.51 -51.93 -0.34 1.08 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.48 2.48 -52.51 -0.13 1.35 16 43 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 44 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.08 1.46 7.00 -51.93 -0.36 1.09 16 47 H 0.27 7.64 5.12 -40.82 -0.21 7.43 16 48 H 0.18 1.81 8.06 -52.48 -0.42 1.38 16 49 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 51 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 52 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 388.57 15.07 5.86 5.86 Total: -1.00 -31.63 388.57 -8.71 -40.34 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -8.30 Total: 5.68 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -1.37 Total: -4.56 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.13 Total: -56.73 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.10 Total: 19.23 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.63 -8.71 -40.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039794485.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.021 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds