Wall clock time and date at job start Wed Apr 1 2020 05:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47085 * 2 1 4 4 C 1.53001 * 109.47324 * 240.00094 * 2 1 3 5 5 C 1.50700 * 109.47116 * 64.99913 * 4 2 1 6 6 O 1.21280 * 119.99775 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99942 * 180.02562 * 5 4 2 8 8 C 1.46952 * 120.44684 * 0.02562 * 7 5 4 9 9 C 1.54064 * 108.50130 * 125.62468 * 8 7 5 10 10 H 1.09000 * 110.71416 * 172.22498 * 9 8 7 11 11 C 1.53367 * 108.80977 * 294.57984 * 9 8 7 12 12 C 1.53018 * 109.24512 * 60.02181 * 11 9 8 13 13 C 1.52561 * 109.66194 * 60.81794 * 12 11 9 14 14 C 1.53370 * 109.33387 * 299.16212 * 13 12 11 15 15 H 1.09004 * 111.08121 * 177.90026 * 14 13 12 16 16 C 1.46957 * 120.44460 * 179.97438 * 7 5 4 17 17 N 1.47565 * 107.51869 * 51.29682 * 9 8 7 18 18 C 1.36938 * 121.61068 * 120.51967 * 17 9 8 19 19 H 1.08000 * 120.00324 * 203.60228 * 18 17 9 20 20 C 1.38813 * 120.00042 * 23.60929 * 18 17 9 21 21 N 1.31616 * 119.99908 * 27.99275 * 20 18 17 22 22 Si 1.86797 * 120.00151 * 207.99595 * 20 18 17 23 23 H 1.48506 * 109.46832 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47521 * 119.99624 * 22 20 18 25 25 H 1.48503 * 109.47017 * 239.99946 * 22 20 18 26 26 C 1.50696 * 109.47459 * 119.99793 * 2 1 3 27 27 C 1.39870 * 126.03902 * 60.02462 * 26 2 1 28 28 N 1.30834 * 108.20669 * 179.97438 * 27 26 2 29 29 N 1.40093 * 108.20280 * 0.02562 * 28 27 26 30 30 C 1.46494 * 126.03690 * 180.02562 * 29 28 27 31 31 C 1.34943 * 107.92296 * 359.75215 * 29 28 27 32 32 H 1.08997 * 109.47543 * 299.99843 * 1 2 3 33 33 H 1.09005 * 109.47114 * 60.00239 * 1 2 3 34 34 H 1.09001 * 109.47085 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.46831 * 304.99733 * 4 2 1 36 36 H 1.08997 * 109.47192 * 184.99699 * 4 2 1 37 37 H 1.08990 * 109.62344 * 245.46703 * 8 7 5 38 38 H 1.09000 * 109.61464 * 5.84033 * 8 7 5 39 39 H 1.08999 * 109.51030 * 179.97438 * 11 9 8 40 40 H 1.09004 * 109.50529 * 300.04827 * 11 9 8 41 41 H 1.08996 * 109.41391 * 180.68507 * 12 11 9 42 42 H 1.08990 * 109.41614 * 300.55472 * 12 11 9 43 43 H 1.09010 * 109.38021 * 179.26242 * 13 12 11 44 44 H 1.08999 * 109.56465 * 59.18410 * 13 12 11 45 45 H 1.09006 * 109.62613 * 114.56809 * 16 7 5 46 46 H 1.08997 * 109.78637 * 354.08839 * 16 7 5 47 47 H 0.96995 * 120.00349 * 5.74852 * 21 20 18 48 48 H 1.08004 * 125.89499 * 0.02562 * 27 26 2 49 49 H 1.09000 * 109.47457 * 89.97131 * 30 29 28 50 50 H 1.09001 * 109.47383 * 209.97464 * 30 29 28 51 51 H 1.09000 * 109.47215 * 329.97139 * 30 29 28 52 52 H 1.08006 * 126.12618 * 180.23823 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 8 1.0109 1.0869 -2.3633 7 7 1.9845 -0.3919 -3.7001 8 6 2.7469 -1.6393 -3.8488 9 6 1.9771 -2.5718 -4.8036 10 1 2.5736 -3.4507 -5.0482 11 6 0.6516 -2.9708 -4.1432 12 6 -0.1734 -1.7120 -3.8673 13 6 -0.4737 -0.9969 -5.1810 14 6 0.8446 -0.5861 -5.8484 15 1 0.6641 -0.1043 -6.8094 16 6 1.6004 0.3590 -4.9036 17 7 1.6650 -1.8004 -6.0222 18 6 2.1103 -2.1954 -7.2554 19 1 2.2133 -1.4711 -8.0499 20 6 2.4292 -3.5268 -7.4845 21 7 1.8317 -4.4748 -6.7941 22 14 3.7063 -3.9731 -8.7726 23 1 4.2255 -2.7337 -9.4049 24 1 4.8250 -4.7062 -8.1274 25 1 3.0833 -4.8339 -9.8099 26 6 2.0324 -0.7103 1.2304 27 6 1.7740 -2.0409 1.5756 28 7 2.3784 -2.2942 2.7080 29 7 3.0411 -1.1308 3.1202 30 6 3.8410 -0.9801 4.3381 31 6 2.8174 -0.1752 2.1940 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.6055 -1.7198 -1.2951 36 1 3.1263 -0.7994 -1.2056 37 1 3.7310 -1.4198 -4.2625 38 1 2.8572 -2.1189 -2.8762 39 1 0.0970 -3.6310 -4.8099 40 1 0.8535 -3.4874 -3.2048 41 1 -1.1110 -1.9914 -3.3868 42 1 0.3873 -1.0483 -3.2092 43 1 -1.0725 -0.1083 -4.9805 44 1 -1.0241 -1.6655 -5.8430 45 1 2.4942 0.7358 -5.4009 46 1 0.9556 1.1934 -4.6277 47 1 1.1104 -4.2505 -6.1857 48 1 1.1790 -2.7389 1.0054 49 1 4.8784 -1.2389 4.1259 50 1 3.7874 0.0526 4.6827 51 1 3.4525 -1.6420 5.1122 52 1 3.1954 0.8363 2.2185 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039794485.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:43 Heat of formation + Delta-G solvation = 73.189875 kcal Electronic energy + Delta-G solvation = -32637.595260 eV Core-core repulsion = 28639.640893 eV Total energy + Delta-G solvation = -3997.954367 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.35786 -41.97245 -39.53402 -36.29654 -35.74757 -34.63998 -33.78234 -33.46297 -32.01075 -30.64576 -29.35867 -27.83067 -27.32636 -27.07063 -25.29077 -23.73203 -23.09532 -22.82807 -21.96436 -21.04942 -20.45444 -20.01802 -18.74524 -18.05842 -17.30298 -16.92150 -16.59016 -16.25850 -16.14382 -15.83853 -15.65850 -15.38757 -15.22161 -15.03121 -14.61200 -14.37754 -14.28691 -14.11358 -13.95975 -13.72590 -13.67348 -13.54530 -13.35475 -13.21044 -13.15744 -12.66367 -12.53840 -12.44572 -12.29969 -12.02639 -11.94189 -11.89041 -11.85063 -11.77554 -11.64002 -11.29498 -11.25890 -11.04601 -10.58820 -10.39371 -10.31467 -9.51473 -9.25068 -8.64893 -8.15839 -5.26166 1.00820 1.62677 1.66223 1.69590 1.75291 1.84484 1.85074 2.11912 2.68996 3.23826 3.42081 3.52783 3.75002 3.96307 4.03307 4.07562 4.10082 4.14419 4.15558 4.23124 4.29182 4.34883 4.42524 4.47186 4.49535 4.57810 4.65310 4.70012 4.71983 4.72658 4.76410 4.79456 4.82136 4.85049 4.90230 4.94356 4.99616 5.08520 5.14412 5.22484 5.26584 5.32873 5.38031 5.46502 5.51546 5.58349 5.64520 5.76902 5.89253 6.20130 6.49242 6.54411 6.79205 7.10719 7.23986 7.82624 8.30872 9.10271 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.002982 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.008468 B = 9388.685368 C =10164.116025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.019 3.981 3 H 0.078 0.922 4 C -0.129 4.129 5 C 0.517 3.483 6 O -0.571 6.571 7 N -0.595 5.595 8 C 0.104 3.896 9 C 0.152 3.848 10 H 0.074 0.926 11 C -0.117 4.117 12 C -0.131 4.131 13 C -0.119 4.119 14 C 0.148 3.852 15 H 0.067 0.933 16 C 0.113 3.887 17 N -0.602 5.602 18 C -0.347 4.347 19 H 0.048 0.952 20 C -0.071 4.071 21 N -0.944 5.944 22 Si 1.110 2.890 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.299 1.299 26 C -0.239 4.239 27 C 0.047 3.953 28 N -0.336 5.336 29 N -0.383 5.383 30 C 0.094 3.906 31 C 0.062 3.938 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.028 0.972 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.029 0.971 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.266 0.734 48 H 0.188 0.812 49 H 0.083 0.917 50 H 0.114 0.886 51 H 0.087 0.913 52 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.582 9.428 20.351 22.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.001 4.001 3 H 0.096 0.904 4 C -0.168 4.168 5 C 0.309 3.691 6 O -0.451 6.451 7 N -0.327 5.327 8 C -0.020 4.020 9 C 0.045 3.955 10 H 0.092 0.908 11 C -0.156 4.156 12 C -0.169 4.169 13 C -0.159 4.159 14 C 0.041 3.959 15 H 0.085 0.915 16 C -0.012 4.012 17 N -0.325 5.325 18 C -0.476 4.476 19 H 0.066 0.934 20 C -0.268 4.268 21 N -0.587 5.587 22 Si 0.937 3.063 23 H -0.205 1.205 24 H -0.213 1.213 25 H -0.226 1.226 26 C -0.251 4.251 27 C -0.138 4.138 28 N -0.159 5.159 29 N -0.165 5.165 30 C -0.046 4.046 31 C -0.085 4.085 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.126 0.874 39 H 0.046 0.954 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.048 0.952 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.078 0.922 48 H 0.205 0.795 49 H 0.102 0.898 50 H 0.132 0.868 51 H 0.106 0.894 52 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 4.472 7.868 20.748 22.636 hybrid contribution -1.397 1.355 -0.718 2.074 sum 3.075 9.223 20.030 22.265 Atomic orbital electron populations 1.21864 0.94820 1.01538 1.01793 1.18952 0.95330 0.97744 0.88055 0.90398 1.21860 1.03794 1.00232 0.90957 1.20910 0.78244 0.85244 0.84729 1.90629 1.41762 1.26192 1.86521 1.48193 1.54354 1.24408 1.05757 1.22389 0.94246 0.84391 1.00991 1.21359 0.94425 0.94172 0.85587 0.90780 1.21900 0.97316 0.97062 0.99347 1.22005 0.99412 0.97658 0.97840 1.21792 0.97545 0.99307 0.97225 1.21324 0.90025 0.88346 0.96230 0.91490 1.21915 0.99276 0.94421 0.85570 1.44703 1.58485 1.26739 1.02569 1.20173 1.42606 0.94075 0.90788 0.93382 1.26803 1.03974 0.91645 1.04382 1.70817 1.23535 1.34465 1.29928 0.82904 0.74588 0.75141 0.73663 1.20455 1.21291 1.22632 1.20047 1.08866 0.95225 1.00943 1.23981 0.99066 0.96746 0.93991 1.77304 1.14839 1.07605 1.16104 1.48784 1.39997 1.07832 1.19897 1.22155 0.94512 1.05323 0.82642 1.22828 0.99043 0.96697 0.89944 0.92717 0.92635 0.92899 0.88020 0.87664 0.91974 0.87437 0.95366 0.91060 0.93649 0.88263 0.91922 0.95227 0.92339 0.89289 0.92245 0.79517 0.89825 0.86758 0.89408 0.78043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.82 71.98 0.64 -2.55 16 2 C 0.02 0.39 2.40 -11.54 -0.03 0.37 16 3 H 0.08 1.64 7.92 -2.39 -0.02 1.62 16 4 C -0.13 -2.82 3.34 29.85 0.10 -2.72 16 5 C 0.52 14.93 4.74 87.66 0.42 15.35 16 6 O -0.57 -19.09 13.36 -3.03 -0.04 -19.13 16 7 N -0.59 -18.88 1.65 -816.41 -1.35 -20.22 16 8 C 0.10 3.39 5.82 86.65 0.50 3.90 16 9 C 0.15 6.34 2.49 45.27 0.11 6.45 16 10 H 0.07 3.65 5.90 -2.39 -0.01 3.64 16 11 C -0.12 -4.51 5.33 30.72 0.16 -4.34 16 12 C -0.13 -4.61 5.54 30.45 0.17 -4.44 16 13 C -0.12 -4.55 5.55 30.57 0.17 -4.39 16 14 C 0.15 5.97 3.62 45.09 0.16 6.13 16 15 H 0.07 2.78 8.01 -2.38 -0.02 2.76 16 16 C 0.11 3.93 5.88 86.47 0.51 4.43 16 17 N -0.60 -28.13 2.43 -644.91 -1.57 -29.69 16 18 C -0.35 -18.58 9.62 84.03 0.81 -17.77 16 19 H 0.05 2.63 7.97 -2.91 -0.02 2.61 16 20 C -0.07 -3.87 4.75 84.86 0.40 -3.47 16 21 N -0.94 -54.73 12.20 21.65 0.26 -54.46 16 22 Si 1.11 49.88 30.00 68.60 2.06 51.94 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.30 -13.50 7.11 99.48 0.71 -12.80 16 26 C -0.24 -4.59 4.80 -20.14 -0.10 -4.69 16 27 C 0.05 1.01 11.54 85.24 0.98 1.99 16 28 N -0.34 -7.86 12.58 -57.02 -0.72 -8.57 16 29 N -0.38 -6.65 4.01 -369.57 -1.48 -8.13 16 30 C 0.09 0.78 11.47 127.77 1.47 2.25 16 31 C 0.06 0.98 11.38 83.54 0.95 1.93 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.50 5.95 -2.38 -0.01 1.49 16 34 H 0.05 1.11 8.03 -2.39 -0.02 1.09 16 35 H 0.10 2.11 7.68 -2.39 -0.02 2.09 16 36 H 0.11 2.04 7.92 -2.39 -0.02 2.02 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.11 2.78 5.90 -2.39 -0.01 2.77 16 39 H 0.03 1.28 6.51 -2.39 -0.02 1.26 16 40 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.10 3.23 2.48 -3.52 -0.01 3.22 16 43 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 44 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 46 H 0.09 3.01 7.00 -2.39 -0.02 2.99 16 47 H 0.27 15.40 5.12 -92.71 -0.47 14.92 16 48 H 0.19 3.43 8.06 -2.91 -0.02 3.40 16 49 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 51 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 52 H 0.20 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -69.82 388.57 5.80 -64.01 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 1.20 Total: 25.82 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 7.43 Total: -1.57 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -4.85 Total: -121.09 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.04 Total: -19.13 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 2.06 Total: 51.94 kcal Total: -69.82 5.80 -64.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039794485.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.204 kcal (2) G-P(sol) polarization free energy of solvation -69.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds