Wall clock time and date at job start Wed Apr 1 2020 04:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46605 * 2 1 4 4 C 1.52995 * 109.46920 * 119.99838 * 2 1 3 5 5 C 1.50698 * 109.47093 * 295.00207 * 4 2 1 6 6 C 1.39868 * 126.04329 * 90.02661 * 5 4 2 7 7 N 1.30831 * 108.20428 * 179.97438 * 6 5 4 8 8 N 1.40077 * 108.20798 * 359.97438 * 7 6 5 9 9 C 1.46503 * 126.03748 * 179.97438 * 8 7 6 10 10 C 1.34943 * 107.92584 * 359.75909 * 8 7 6 11 11 C 1.50702 * 109.47114 * 239.99952 * 2 1 3 12 12 O 1.21283 * 119.99922 * 250.77104 * 11 2 1 13 13 N 1.34776 * 120.00268 * 70.77016 * 11 2 1 14 14 C 1.46952 * 120.43966 * 355.62575 * 13 11 2 15 15 C 1.53590 * 108.51982 * 125.72007 * 14 13 11 16 16 H 1.09009 * 110.59951 * 172.17704 * 15 14 13 17 17 C 1.53370 * 108.68850 * 294.37387 * 15 14 13 18 18 C 1.53463 * 109.21805 * 60.41732 * 17 15 14 19 19 C 1.53011 * 109.91662 * 60.30261 * 18 17 15 20 20 C 1.53370 * 109.25317 * 299.64019 * 19 18 17 21 21 H 1.08992 * 111.08561 * 177.84910 * 20 19 18 22 22 C 1.46938 * 120.44716 * 175.60289 * 13 11 2 23 23 N 1.47564 * 107.77207 * 51.15824 * 15 14 13 24 24 C 1.36939 * 121.61358 * 120.44788 * 23 15 14 25 25 H 1.07999 * 120.00212 * 207.53672 * 24 23 15 26 26 C 1.38811 * 119.99658 * 27.53727 * 24 23 15 27 27 N 1.31619 * 120.00109 * 24.93896 * 26 24 23 28 28 Si 1.86808 * 120.00070 * 204.93887 * 26 24 23 29 29 H 1.48501 * 109.47099 * 89.99849 * 28 26 24 30 30 H 1.48492 * 109.47445 * 210.00159 * 28 26 24 31 31 H 1.48503 * 109.46927 * 330.00104 * 28 26 24 32 32 H 1.08990 * 109.47365 * 302.84647 * 1 2 3 33 33 H 1.09000 * 109.47088 * 62.84684 * 1 2 3 34 34 H 1.09008 * 109.46859 * 182.84191 * 1 2 3 35 35 H 1.09001 * 109.47283 * 55.00442 * 4 2 1 36 36 H 1.08995 * 109.46925 * 175.00128 * 4 2 1 37 37 H 1.08008 * 125.89464 * 0.02562 * 6 5 4 38 38 H 1.09001 * 109.47233 * 89.98061 * 9 8 7 39 39 H 1.09002 * 109.46986 * 209.97699 * 9 8 7 40 40 H 1.08994 * 109.47309 * 329.97527 * 9 8 7 41 41 H 1.08002 * 126.13251 * 180.23865 * 10 8 7 42 42 H 1.09003 * 109.63227 * 6.00799 * 14 13 11 43 43 H 1.09000 * 109.62656 * 245.42732 * 14 13 11 44 44 H 1.08996 * 109.50273 * 180.25270 * 17 15 14 45 45 H 1.09001 * 109.50379 * 300.36960 * 17 15 14 46 46 H 1.08995 * 109.16718 * 300.28604 * 18 17 15 47 47 H 1.08995 * 109.48418 * 180.52424 * 18 17 15 48 48 H 1.09005 * 109.50370 * 179.70559 * 19 18 17 49 49 H 1.09003 * 109.54310 * 59.60233 * 19 18 17 50 50 H 1.09002 * 109.62470 * 353.97535 * 22 13 11 51 51 H 1.08998 * 109.62550 * 114.34918 * 22 13 11 52 52 H 0.96993 * 120.00405 * 8.96383 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6412 0.0571 2.4765 6 6 0.4574 -0.1030 3.2039 7 7 0.4705 0.7472 4.1982 8 7 1.6651 1.4759 4.1353 9 6 2.0801 2.5324 5.0616 10 6 2.3684 1.0297 3.0736 11 6 2.0324 -0.7104 -1.2305 12 8 2.5607 -1.7975 -1.1299 13 7 1.8946 -0.1378 -2.4427 14 6 1.1716 1.1333 -2.5879 15 6 2.0861 2.1351 -3.3084 16 1 1.5383 3.0442 -3.5571 17 6 3.2857 2.4439 -2.4041 18 6 4.0578 1.1465 -2.1286 19 6 4.5621 0.5506 -3.4446 20 6 3.3643 0.2382 -4.3501 21 1 3.6923 -0.1536 -5.3128 22 6 2.4656 -0.7758 -3.6368 23 7 2.5933 1.4833 -4.5312 24 6 2.3549 2.0053 -5.7746 25 1 2.3204 1.3547 -6.6359 26 6 2.1576 3.3708 -5.9278 27 7 2.6593 4.2110 -5.0477 28 14 1.1801 4.0158 -7.3831 29 1 -0.2563 4.1011 -7.0159 30 1 1.6770 5.3649 -7.7544 31 1 1.3424 3.0940 -8.5360 32 1 -0.3633 0.5573 0.8633 33 1 -0.3633 0.4690 -0.9144 34 1 -0.3633 -1.0265 0.0510 35 1 1.6054 -1.7198 1.2951 36 1 3.1262 -0.7994 1.2056 37 1 -0.3311 -0.8075 2.9833 38 1 2.6419 2.0929 5.8859 39 1 2.7090 3.2505 4.5355 40 1 1.1983 3.0398 5.4527 41 1 3.3367 1.3869 2.7555 42 1 0.9091 1.5198 -1.6030 43 1 0.2672 0.9751 -3.1752 44 1 3.9420 3.1581 -2.9014 45 1 2.9331 2.8667 -1.4634 46 1 3.3955 0.4332 -1.6381 47 1 4.9063 1.3595 -1.4785 48 1 5.1136 -0.3673 -3.2407 49 1 5.2173 1.2661 -3.9414 50 1 3.0542 -1.6445 -3.3417 51 1 1.6627 -1.0876 -4.3048 52 1 3.2730 3.8921 -4.3676 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039959145.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:30 Heat of formation + Delta-G solvation = 89.969890 kcal Electronic energy + Delta-G solvation = -32904.586976 eV Core-core repulsion = 28907.360245 eV Total energy + Delta-G solvation = -3997.226731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.43125 -40.81117 -38.08408 -35.22044 -34.18379 -33.22837 -32.79983 -32.01726 -30.43717 -30.22097 -27.72131 -26.89312 -25.90508 -25.65057 -23.88165 -22.70696 -21.49908 -21.31221 -21.16880 -20.19877 -18.97598 -18.60470 -17.55308 -16.83726 -16.20704 -15.80391 -15.45221 -15.21968 -14.63446 -14.46284 -14.19911 -14.13373 -13.81370 -13.67072 -13.53623 -13.22090 -13.00451 -12.97165 -12.87400 -12.57141 -12.46075 -12.26611 -12.18512 -12.06543 -11.89962 -11.60895 -11.24180 -11.05125 -10.99811 -10.74888 -10.65847 -10.53846 -10.30620 -10.28093 -10.18511 -9.94772 -9.66048 -9.56879 -9.38622 -9.14768 -8.50940 -8.45741 -7.96114 -6.84310 -6.07032 -3.30130 1.74119 2.36452 2.64989 2.93306 3.42266 3.48417 3.49121 3.65891 4.32411 4.52539 4.68714 4.71246 4.85738 4.94493 4.96614 4.99001 5.10302 5.12021 5.28094 5.37237 5.45782 5.49591 5.57907 5.60086 5.65593 5.66212 5.72657 5.75209 5.80640 5.86760 5.89781 6.05513 6.11047 6.15157 6.18840 6.25806 6.26729 6.31409 6.37401 6.43649 6.51985 6.53473 6.67458 6.80107 6.84695 6.85171 6.96172 7.10252 7.15820 7.55085 7.84658 7.91794 8.50790 8.51616 9.03497 9.75153 10.22955 11.17338 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.003190 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.540937 B = 8775.034388 C = 9430.482471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.019 4.019 5 C -0.228 4.228 6 C 0.055 3.945 7 N -0.301 5.301 8 N -0.379 5.379 9 C 0.102 3.898 10 C 0.056 3.944 11 C 0.519 3.481 12 O -0.556 6.556 13 N -0.590 5.590 14 C 0.089 3.911 15 C 0.156 3.844 16 H 0.106 0.894 17 C -0.124 4.124 18 C -0.138 4.138 19 C -0.123 4.123 20 C 0.154 3.846 21 H 0.078 0.922 22 C 0.102 3.898 23 N -0.586 5.586 24 C -0.342 4.342 25 H 0.058 0.942 26 C -0.022 4.022 27 N -0.918 5.918 28 Si 1.062 2.938 29 H -0.293 1.293 30 H -0.291 1.291 31 H -0.293 1.293 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.181 0.819 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.173 0.827 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.044 0.956 46 H 0.084 0.916 47 H 0.034 0.966 48 H 0.045 0.955 49 H 0.055 0.945 50 H 0.082 0.918 51 H 0.061 0.939 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.529 -4.962 15.930 16.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 H 0.112 0.888 4 C -0.058 4.058 5 C -0.239 4.239 6 C -0.132 4.132 7 N -0.123 5.123 8 N -0.161 5.161 9 C -0.039 4.039 10 C -0.090 4.090 11 C 0.309 3.691 12 O -0.436 6.436 13 N -0.322 5.322 14 C -0.036 4.036 15 C 0.048 3.952 16 H 0.123 0.877 17 C -0.164 4.164 18 C -0.176 4.176 19 C -0.163 4.163 20 C 0.046 3.954 21 H 0.096 0.904 22 C -0.022 4.022 23 N -0.308 5.308 24 C -0.471 4.471 25 H 0.076 0.924 26 C -0.224 4.224 27 N -0.560 5.560 28 Si 0.892 3.108 29 H -0.221 1.221 30 H -0.217 1.217 31 H -0.220 1.220 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.198 0.802 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.190 0.810 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.101 0.899 47 H 0.053 0.947 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.100 0.900 51 H 0.079 0.921 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.508 -3.573 16.357 16.929 hybrid contribution 1.296 -1.418 -0.170 1.928 sum -1.213 -4.991 16.186 16.982 Atomic orbital electron populations 1.21915 0.92985 1.02625 1.02896 1.21347 0.97852 1.00796 0.92750 0.88845 1.19650 1.01062 0.97287 0.87780 1.20080 0.97055 1.04156 1.02641 1.23800 0.98242 0.98239 0.92875 1.77329 1.02350 1.09453 1.23139 1.48422 1.14654 1.30108 1.22958 1.21834 1.01558 0.88060 0.92452 1.22379 0.98868 0.97595 0.90120 1.20359 0.78638 0.85484 0.84615 1.90650 1.45453 1.21093 1.86358 1.48127 1.53918 1.23398 1.06749 1.22622 0.95733 0.84436 1.00760 1.21261 0.92531 0.95431 0.85974 0.87670 1.22091 0.98928 0.96955 0.98388 1.22176 0.99347 0.98663 0.97413 1.21930 0.98330 0.99301 0.96715 1.21140 0.89983 0.88176 0.96101 0.90392 1.22104 0.97665 0.96430 0.86023 1.44464 1.58865 1.25234 1.02233 1.20026 1.49111 0.92726 0.85200 0.92378 1.25743 1.01209 0.92099 1.03367 1.70745 1.29134 1.36558 1.19560 0.83568 0.76423 0.75586 0.75224 1.22062 1.21710 1.21956 0.91409 0.91658 0.92188 0.90402 0.90945 0.80204 0.90938 0.89439 0.89384 0.81026 0.90305 0.91547 0.91635 0.93765 0.89852 0.94736 0.93619 0.92622 0.89990 0.92108 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.42 37.16 0.31 -1.36 16 2 C -0.11 -1.36 1.75 -91.77 -0.16 -1.52 16 3 H 0.09 1.21 7.23 -51.93 -0.38 0.83 16 4 C -0.02 -0.22 4.48 -27.89 -0.12 -0.35 16 5 C -0.23 -2.51 4.78 -105.05 -0.50 -3.01 16 6 C 0.05 0.60 10.71 -17.37 -0.19 0.42 16 7 N -0.30 -3.69 12.57 30.62 0.39 -3.30 16 8 N -0.38 -3.90 4.01 -68.16 -0.27 -4.17 16 9 C 0.10 0.63 11.47 59.85 0.69 1.32 16 10 C 0.06 0.57 11.40 -17.22 -0.20 0.37 16 11 C 0.52 8.39 4.39 -10.98 -0.05 8.34 16 12 O -0.56 -10.44 15.45 5.55 0.09 -10.35 16 13 N -0.59 -10.03 1.65 -172.54 -0.28 -10.31 16 14 C 0.09 1.52 4.64 -3.49 -0.02 1.51 16 15 C 0.16 3.24 2.48 -66.85 -0.17 3.07 16 16 H 0.11 2.53 6.10 -51.92 -0.32 2.21 16 17 C -0.12 -2.39 5.36 -26.30 -0.14 -2.53 16 18 C -0.14 -2.48 5.57 -26.49 -0.15 -2.63 16 19 C -0.12 -2.35 5.58 -26.53 -0.15 -2.49 16 20 C 0.15 3.08 3.60 -67.09 -0.24 2.84 16 21 H 0.08 1.58 8.01 -51.93 -0.42 1.16 16 22 C 0.10 1.84 5.85 -3.74 -0.02 1.82 16 23 N -0.59 -13.43 2.39 -155.71 -0.37 -13.81 16 24 C -0.34 -8.91 9.62 -15.06 -0.14 -9.06 16 25 H 0.06 1.54 7.94 -52.49 -0.42 1.13 16 26 C -0.02 -0.59 4.79 -17.43 -0.08 -0.67 16 27 N -0.92 -25.74 12.20 55.49 0.68 -25.06 16 28 Si 1.06 24.16 29.99 -169.99 -5.10 19.07 16 29 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 30 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 31 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 32 H 0.07 0.71 6.59 -51.93 -0.34 0.37 16 33 H 0.06 0.77 5.75 -51.93 -0.30 0.47 16 34 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 36 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 37 H 0.18 1.59 8.06 -52.48 -0.42 1.16 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.08 1.16 4.61 -51.93 -0.24 0.92 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.07 1.44 6.33 -51.93 -0.33 1.12 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.08 1.45 2.34 -52.45 -0.12 1.33 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 50 H 0.08 1.47 7.01 -51.93 -0.36 1.11 16 51 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 52 H 0.27 7.58 5.08 -40.82 -0.21 7.37 16 LS Contribution 385.23 15.07 5.81 5.81 Total: -1.00 -31.72 385.23 -8.54 -40.26 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -8.14 Total: 5.80 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.33 Total: -3.93 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.13 Total: -56.65 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -5.10 Total: 19.07 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.72 -8.54 -40.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039959145.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.233 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds