Wall clock time and date at job start Wed Apr 1 2020 04:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46605 * 2 1 4 4 C 1.52995 * 109.46920 * 119.99838 * 2 1 3 5 5 C 1.50698 * 109.47093 * 295.00207 * 4 2 1 6 6 C 1.39868 * 126.04329 * 90.02661 * 5 4 2 7 7 N 1.30831 * 108.20428 * 179.97438 * 6 5 4 8 8 N 1.40077 * 108.20798 * 359.97438 * 7 6 5 9 9 C 1.46503 * 126.03748 * 179.97438 * 8 7 6 10 10 C 1.34943 * 107.92584 * 359.75909 * 8 7 6 11 11 C 1.50702 * 109.47114 * 239.99952 * 2 1 3 12 12 O 1.21283 * 119.99922 * 250.77104 * 11 2 1 13 13 N 1.34776 * 120.00268 * 70.77016 * 11 2 1 14 14 C 1.46952 * 120.43966 * 355.62575 * 13 11 2 15 15 C 1.53590 * 108.51982 * 125.72007 * 14 13 11 16 16 H 1.09009 * 110.59951 * 172.17704 * 15 14 13 17 17 C 1.53370 * 108.68850 * 294.37387 * 15 14 13 18 18 C 1.53463 * 109.21805 * 60.41732 * 17 15 14 19 19 C 1.53011 * 109.91662 * 60.30261 * 18 17 15 20 20 C 1.53370 * 109.25317 * 299.64019 * 19 18 17 21 21 H 1.08992 * 111.08561 * 177.84910 * 20 19 18 22 22 C 1.46938 * 120.44716 * 175.60289 * 13 11 2 23 23 N 1.47564 * 107.77207 * 51.15824 * 15 14 13 24 24 C 1.36939 * 121.61358 * 120.44788 * 23 15 14 25 25 H 1.07999 * 120.00212 * 207.53672 * 24 23 15 26 26 C 1.38811 * 119.99658 * 27.53727 * 24 23 15 27 27 N 1.31619 * 120.00109 * 24.93896 * 26 24 23 28 28 Si 1.86808 * 120.00070 * 204.93887 * 26 24 23 29 29 H 1.48501 * 109.47099 * 89.99849 * 28 26 24 30 30 H 1.48492 * 109.47445 * 210.00159 * 28 26 24 31 31 H 1.48503 * 109.46927 * 330.00104 * 28 26 24 32 32 H 1.08990 * 109.47365 * 302.84647 * 1 2 3 33 33 H 1.09000 * 109.47088 * 62.84684 * 1 2 3 34 34 H 1.09008 * 109.46859 * 182.84191 * 1 2 3 35 35 H 1.09001 * 109.47283 * 55.00442 * 4 2 1 36 36 H 1.08995 * 109.46925 * 175.00128 * 4 2 1 37 37 H 1.08008 * 125.89464 * 0.02562 * 6 5 4 38 38 H 1.09001 * 109.47233 * 89.98061 * 9 8 7 39 39 H 1.09002 * 109.46986 * 209.97699 * 9 8 7 40 40 H 1.08994 * 109.47309 * 329.97527 * 9 8 7 41 41 H 1.08002 * 126.13251 * 180.23865 * 10 8 7 42 42 H 1.09003 * 109.63227 * 6.00799 * 14 13 11 43 43 H 1.09000 * 109.62656 * 245.42732 * 14 13 11 44 44 H 1.08996 * 109.50273 * 180.25270 * 17 15 14 45 45 H 1.09001 * 109.50379 * 300.36960 * 17 15 14 46 46 H 1.08995 * 109.16718 * 300.28604 * 18 17 15 47 47 H 1.08995 * 109.48418 * 180.52424 * 18 17 15 48 48 H 1.09005 * 109.50370 * 179.70559 * 19 18 17 49 49 H 1.09003 * 109.54310 * 59.60233 * 19 18 17 50 50 H 1.09002 * 109.62470 * 353.97535 * 22 13 11 51 51 H 1.08998 * 109.62550 * 114.34918 * 22 13 11 52 52 H 0.96993 * 120.00405 * 8.96383 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6412 0.0571 2.4765 6 6 0.4574 -0.1030 3.2039 7 7 0.4705 0.7472 4.1982 8 7 1.6651 1.4759 4.1353 9 6 2.0801 2.5324 5.0616 10 6 2.3684 1.0297 3.0736 11 6 2.0324 -0.7104 -1.2305 12 8 2.5607 -1.7975 -1.1299 13 7 1.8946 -0.1378 -2.4427 14 6 1.1716 1.1333 -2.5879 15 6 2.0861 2.1351 -3.3084 16 1 1.5383 3.0442 -3.5571 17 6 3.2857 2.4439 -2.4041 18 6 4.0578 1.1465 -2.1286 19 6 4.5621 0.5506 -3.4446 20 6 3.3643 0.2382 -4.3501 21 1 3.6923 -0.1536 -5.3128 22 6 2.4656 -0.7758 -3.6368 23 7 2.5933 1.4833 -4.5312 24 6 2.3549 2.0053 -5.7746 25 1 2.3204 1.3547 -6.6359 26 6 2.1576 3.3708 -5.9278 27 7 2.6593 4.2110 -5.0477 28 14 1.1801 4.0158 -7.3831 29 1 -0.2563 4.1011 -7.0159 30 1 1.6770 5.3649 -7.7544 31 1 1.3424 3.0940 -8.5360 32 1 -0.3633 0.5573 0.8633 33 1 -0.3633 0.4690 -0.9144 34 1 -0.3633 -1.0265 0.0510 35 1 1.6054 -1.7198 1.2951 36 1 3.1262 -0.7994 1.2056 37 1 -0.3311 -0.8075 2.9833 38 1 2.6419 2.0929 5.8859 39 1 2.7090 3.2505 4.5355 40 1 1.1983 3.0398 5.4527 41 1 3.3367 1.3869 2.7555 42 1 0.9091 1.5198 -1.6030 43 1 0.2672 0.9751 -3.1752 44 1 3.9420 3.1581 -2.9014 45 1 2.9331 2.8667 -1.4634 46 1 3.3955 0.4332 -1.6381 47 1 4.9063 1.3595 -1.4785 48 1 5.1136 -0.3673 -3.2407 49 1 5.2173 1.2661 -3.9414 50 1 3.0542 -1.6445 -3.3417 51 1 1.6627 -1.0876 -4.3048 52 1 3.2730 3.8921 -4.3676 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039959145.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:28 Heat of formation + Delta-G solvation = 73.243543 kcal Electronic energy + Delta-G solvation = -32905.312284 eV Core-core repulsion = 28907.360245 eV Total energy + Delta-G solvation = -3997.952040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.44531 -41.98619 -39.54544 -36.25642 -35.82117 -34.60436 -33.89179 -33.43822 -32.04139 -31.28859 -28.62484 -28.29912 -27.17612 -26.72004 -25.51238 -24.01721 -23.08833 -22.78289 -21.91935 -21.11912 -20.45615 -20.10255 -18.88568 -18.02633 -17.35697 -17.03337 -16.63732 -16.23392 -16.16727 -15.80637 -15.59912 -15.36912 -15.22363 -15.07495 -14.60591 -14.54160 -14.28493 -14.10282 -13.93441 -13.76189 -13.62902 -13.52912 -13.29723 -13.23939 -13.00143 -12.85271 -12.64752 -12.50542 -12.33019 -12.09846 -11.95206 -11.93405 -11.89792 -11.83195 -11.64202 -11.42149 -11.27988 -11.04887 -10.60662 -10.43264 -10.29949 -9.54154 -9.24312 -8.66931 -8.09679 -5.32521 0.99720 1.62383 1.62574 1.68157 1.73607 1.81896 1.85229 2.10764 2.68640 3.23259 3.40918 3.48197 3.74844 3.94659 3.99419 4.05852 4.08981 4.11868 4.13098 4.14667 4.25575 4.33332 4.37693 4.46399 4.48807 4.54630 4.56000 4.64529 4.70204 4.72043 4.73838 4.76016 4.80915 4.87963 4.93025 4.96821 4.97880 4.99502 5.11830 5.21197 5.23784 5.29828 5.31391 5.35666 5.41842 5.54039 5.61804 5.76290 5.89342 6.18274 6.48084 6.52788 6.78999 7.11169 7.18570 7.80539 8.29846 9.10933 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.003190 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.540937 B = 8775.034388 C = 9430.482471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.099 0.901 4 C -0.008 4.008 5 C -0.241 4.241 6 C 0.050 3.950 7 N -0.334 5.334 8 N -0.382 5.382 9 C 0.093 3.907 10 C 0.058 3.942 11 C 0.521 3.479 12 O -0.579 6.579 13 N -0.591 5.591 14 C 0.103 3.897 15 C 0.153 3.847 16 H 0.071 0.929 17 C -0.116 4.116 18 C -0.132 4.132 19 C -0.120 4.120 20 C 0.149 3.851 21 H 0.068 0.932 22 C 0.111 3.889 23 N -0.602 5.602 24 C -0.346 4.346 25 H 0.046 0.954 26 C -0.067 4.067 27 N -0.944 5.944 28 Si 1.108 2.892 29 H -0.284 1.284 30 H -0.299 1.299 31 H -0.281 1.281 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.195 0.805 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.196 0.804 42 H 0.110 0.890 43 H 0.061 0.939 44 H 0.031 0.969 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.049 0.951 48 H 0.063 0.937 49 H 0.031 0.969 50 H 0.087 0.913 51 H 0.058 0.942 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.976 -5.307 17.663 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.117 0.883 4 C -0.047 4.047 5 C -0.253 4.253 6 C -0.135 4.135 7 N -0.156 5.156 8 N -0.164 5.164 9 C -0.047 4.047 10 C -0.088 4.088 11 C 0.312 3.688 12 O -0.459 6.459 13 N -0.323 5.323 14 C -0.021 4.021 15 C 0.046 3.954 16 H 0.089 0.911 17 C -0.155 4.155 18 C -0.170 4.170 19 C -0.159 4.159 20 C 0.042 3.958 21 H 0.086 0.914 22 C -0.013 4.013 23 N -0.325 5.325 24 C -0.475 4.475 25 H 0.064 0.936 26 C -0.265 4.265 27 N -0.588 5.588 28 Si 0.934 3.066 29 H -0.210 1.210 30 H -0.226 1.226 31 H -0.206 1.206 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.212 0.788 38 H 0.103 0.897 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.213 0.787 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.050 0.950 45 H 0.089 0.911 46 H 0.113 0.887 47 H 0.068 0.932 48 H 0.081 0.919 49 H 0.050 0.950 50 H 0.106 0.894 51 H 0.076 0.924 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.961 -3.940 18.125 18.783 hybrid contribution 1.507 -1.349 -0.678 2.133 sum -1.454 -5.289 17.447 18.288 Atomic orbital electron populations 1.21887 0.91702 1.03131 1.03215 1.21371 0.98770 1.00574 0.91284 0.88255 1.19494 1.00509 0.97032 0.87642 1.20014 0.97538 1.04967 1.02769 1.24084 0.98703 0.98200 0.92544 1.77284 1.03821 1.10490 1.24049 1.48755 1.14051 1.30270 1.23334 1.22148 1.02162 0.87724 0.92643 1.22797 0.99449 0.96955 0.89645 1.20953 0.77732 0.85179 0.84895 1.90648 1.46383 1.22264 1.86625 1.48141 1.54033 1.23288 1.06872 1.22442 0.94375 0.83548 1.01771 1.21237 0.93425 0.94962 0.85806 0.91061 1.21974 0.97828 0.96932 0.98776 1.22158 0.99934 0.97988 0.96946 1.21866 0.97581 0.99503 0.96924 1.21235 0.90689 0.87573 0.96346 0.91421 1.21879 0.97251 0.95798 0.86420 1.44628 1.59852 1.25937 1.02047 1.20179 1.48290 0.92690 0.86382 0.93570 1.26829 1.02008 0.92618 1.05024 1.70817 1.30420 1.36964 1.20586 0.82928 0.75636 0.74746 0.73253 1.21030 1.22553 1.20642 0.90189 0.92027 0.91805 0.90926 0.91546 0.78825 0.89678 0.87206 0.89239 0.78693 0.87260 0.92039 0.95048 0.91122 0.88720 0.93194 0.91860 0.95020 0.89427 0.92401 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.42 71.98 0.61 -2.21 16 2 C -0.10 -2.24 1.75 -11.54 -0.02 -2.26 16 3 H 0.10 2.19 7.23 -2.39 -0.02 2.18 16 4 C -0.01 -0.16 4.48 29.85 0.13 -0.03 16 5 C -0.24 -4.70 4.78 -20.14 -0.10 -4.80 16 6 C 0.05 1.00 10.71 85.24 0.91 1.92 16 7 N -0.33 -7.58 12.57 -57.02 -0.72 -8.29 16 8 N -0.38 -6.93 4.01 -369.56 -1.48 -8.41 16 9 C 0.09 0.91 11.47 127.77 1.47 2.37 16 10 C 0.06 1.01 11.40 83.54 0.95 1.96 16 11 C 0.52 15.59 4.39 87.66 0.38 15.97 16 12 O -0.58 -20.45 15.45 -3.04 -0.05 -20.50 16 13 N -0.59 -19.06 1.65 -818.17 -1.35 -20.40 16 14 C 0.10 3.37 4.64 86.49 0.40 3.77 16 15 C 0.15 6.33 2.48 45.11 0.11 6.45 16 16 H 0.07 3.48 6.10 -2.38 -0.01 3.47 16 17 C -0.12 -4.37 5.36 30.87 0.17 -4.21 16 18 C -0.13 -4.54 5.57 30.75 0.17 -4.37 16 19 C -0.12 -4.48 5.58 30.72 0.17 -4.31 16 20 C 0.15 5.97 3.60 44.95 0.16 6.13 16 21 H 0.07 2.80 8.01 -2.39 -0.02 2.78 16 22 C 0.11 3.91 5.85 86.34 0.50 4.42 16 23 N -0.60 -27.96 2.39 -646.55 -1.55 -29.50 16 24 C -0.35 -18.40 9.62 84.03 0.81 -17.59 16 25 H 0.05 2.52 7.94 -2.91 -0.02 2.49 16 26 C -0.07 -3.64 4.79 84.86 0.41 -3.24 16 27 N -0.94 -54.19 12.20 21.65 0.26 -53.93 16 28 Si 1.11 49.43 29.99 68.60 2.06 51.48 16 29 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 30 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 31 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 32 H 0.08 1.43 6.59 -2.39 -0.02 1.42 16 33 H 0.06 1.28 5.75 -2.39 -0.01 1.26 16 34 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.07 1.61 8.12 -2.39 -0.02 1.59 16 36 H 0.07 1.49 8.11 -2.39 -0.02 1.47 16 37 H 0.20 3.04 8.06 -2.91 -0.02 3.01 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.20 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.11 2.92 4.61 -2.39 -0.01 2.91 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.03 1.40 6.33 -2.39 -0.02 1.38 16 45 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.10 3.06 2.34 -3.42 -0.01 3.05 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 49 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 50 H 0.09 3.02 7.01 -2.39 -0.02 3.00 16 51 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 52 H 0.27 15.21 5.08 -92.71 -0.47 14.74 16 Total: -1.00 -69.12 385.23 5.64 -63.48 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 1.22 Total: 26.11 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 7.24 Total: -0.03 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -4.83 Total: -120.54 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.05 Total: -20.50 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.06 Total: 51.48 kcal Total: -69.12 5.64 -63.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039959145.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.721 kcal (2) G-P(sol) polarization free energy of solvation -69.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds