Wall clock time and date at job start Wed Apr 1 2020 04:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47366 * 2 1 4 4 C 1.50710 * 109.47005 * 119.99720 * 2 1 3 5 5 O 1.21280 * 119.99340 * 34.37319 * 4 2 1 6 6 N 1.34774 * 120.00098 * 214.37169 * 4 2 1 7 7 C 1.47481 * 125.66063 * 4.66625 * 6 4 2 8 8 C 1.55283 * 104.77498 * 155.88211 * 7 6 4 9 9 C 1.54504 * 101.41539 * 36.68344 * 8 7 6 10 10 C 1.47187 * 125.65991 * 184.96634 * 6 4 2 11 11 C 1.52233 * 110.24612 * 83.58780 * 9 8 7 12 12 C 1.53171 * 109.65450 * 62.92460 * 11 9 8 13 13 C 1.53185 * 109.27566 * 60.17060 * 12 11 9 14 14 N 1.46932 * 108.92714 * 304.78118 * 13 12 11 15 15 C 1.36941 * 120.70063 * 234.14252 * 14 13 12 16 16 H 1.07999 * 120.00199 * 31.27398 * 15 14 13 17 17 C 1.38814 * 119.99886 * 211.27892 * 15 14 13 18 18 N 1.31614 * 119.99721 * 10.11033 * 17 15 14 19 19 Si 1.86800 * 119.99750 * 190.11145 * 17 15 14 20 20 H 1.48501 * 109.47305 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47059 * 119.99936 * 19 17 15 22 22 H 1.48500 * 109.46968 * 239.99585 * 19 17 15 23 23 C 1.47085 * 118.60113 * 54.15548 * 14 13 12 24 24 C 1.50699 * 109.47466 * 239.99620 * 2 1 3 25 25 C 1.35312 * 126.12621 * 274.97849 * 24 2 1 26 26 C 1.39871 * 107.91841 * 180.02562 * 25 24 2 27 27 N 1.30839 * 108.20325 * 0.02562 * 26 25 24 28 28 N 1.34944 * 126.12418 * 95.03050 * 24 2 1 29 29 C 1.46499 * 126.04207 * 359.95517 * 28 24 2 30 30 H 1.09005 * 109.47321 * 54.99991 * 1 2 3 31 31 H 1.08998 * 109.47285 * 174.99481 * 1 2 3 32 32 H 1.09002 * 109.47500 * 295.00138 * 1 2 3 33 33 H 1.09001 * 110.35158 * 274.84150 * 7 6 4 34 34 H 1.09003 * 110.35468 * 37.13018 * 7 6 4 35 35 H 1.09003 * 111.23178 * 278.59150 * 8 7 6 36 36 H 1.09002 * 110.89798 * 154.63747 * 8 7 6 37 37 H 1.09004 * 109.91105 * 300.88328 * 10 6 4 38 38 H 1.08998 * 109.90853 * 62.15121 * 10 6 4 39 39 H 1.09004 * 109.44261 * 182.97222 * 11 9 8 40 40 H 1.08999 * 109.44865 * 302.90276 * 11 9 8 41 41 H 1.08998 * 109.50675 * 180.11374 * 12 11 9 42 42 H 1.09005 * 109.49781 * 300.19607 * 12 11 9 43 43 H 1.09002 * 109.56021 * 64.61131 * 13 12 11 44 44 H 1.08995 * 109.56694 * 184.83177 * 13 12 11 45 45 H 0.97007 * 119.99680 * 179.97438 * 18 17 15 46 46 H 1.08994 * 109.58023 * 187.75039 * 23 14 13 47 47 H 1.09000 * 109.57270 * 67.35848 * 23 14 13 48 48 H 1.07996 * 126.04191 * 0.06577 * 25 24 2 49 49 H 1.08003 * 125.90005 * 179.97438 * 26 25 24 50 50 H 1.08997 * 109.47449 * 270.02609 * 29 28 24 51 51 H 1.09006 * 109.46725 * 30.02846 * 29 28 24 52 52 H 1.09003 * 109.47069 * 150.02132 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 1.4170 -1.6542 1.6794 6 7 3.1652 -0.2968 1.8322 7 6 3.9560 0.8891 1.4538 8 6 4.7284 1.2780 2.7436 9 6 5.0514 -0.1114 3.3372 10 6 3.8219 -0.9574 2.9719 11 6 6.3081 -0.6802 2.6934 12 6 7.5042 0.2214 3.0135 13 6 7.6968 0.2859 4.5319 14 7 6.4407 0.7274 5.1533 15 6 6.4195 1.8056 5.9973 16 1 7.1150 2.6189 5.8520 17 6 5.5039 1.8532 7.0396 18 7 4.7945 0.7865 7.3414 19 14 5.2789 3.4311 8.0138 20 1 6.1885 4.4764 7.4799 21 1 3.8718 3.8904 7.8939 22 1 5.5977 3.1806 9.4423 23 6 5.2067 -0.0131 4.8500 24 6 2.0323 -0.7105 -1.2304 25 6 2.2089 -2.0453 -1.3646 26 6 2.6882 -2.2883 -2.6560 27 7 2.7960 -1.1404 -3.2746 28 7 2.3877 -0.1293 -2.3953 29 6 2.3525 1.3056 -2.6886 30 1 -0.3634 0.5895 -0.8418 31 1 -0.3634 -1.0237 -0.0897 32 1 -0.3634 0.4343 0.9314 33 1 4.6517 0.6409 0.6523 34 1 3.2975 1.7019 1.1473 35 1 4.0998 1.8560 3.4211 36 1 5.6416 1.8214 2.5010 37 1 3.1376 -1.0030 3.8191 38 1 4.1338 -1.9627 2.6888 39 1 6.4940 -1.6812 3.0827 40 1 6.1715 -0.7306 1.6132 41 1 8.4022 -0.1868 2.5498 42 1 7.3183 1.2235 2.6269 43 1 7.9626 -0.7020 4.9083 44 1 8.4917 0.9928 4.7693 45 1 4.1549 0.8196 8.0701 46 1 4.3511 0.5144 5.2715 47 1 5.2674 -1.0143 5.2767 48 1 2.0136 -2.7913 -0.6085 49 1 2.9286 -3.2561 -3.0706 50 1 1.3787 1.5682 -3.1019 51 1 2.5214 1.8684 -1.7705 52 1 3.1314 1.5478 -3.4117 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040209194.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:02 Heat of formation + Delta-G solvation = 66.431095 kcal Electronic energy + Delta-G solvation = -32239.891069 eV Core-core repulsion = 28241.643620 eV Total energy + Delta-G solvation = -3998.247449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.59521 -40.19200 -38.54894 -35.82937 -34.37058 -33.19086 -33.03841 -31.28530 -29.99119 -29.38348 -29.21221 -26.94779 -26.27477 -25.35285 -24.08032 -23.03147 -22.07734 -21.42538 -20.89485 -20.20825 -18.84602 -18.00518 -17.29986 -16.99537 -16.68112 -15.77678 -15.63500 -15.20621 -14.90192 -14.71677 -14.22923 -14.08704 -13.81707 -13.58808 -13.37015 -13.33895 -13.18135 -12.99887 -12.73827 -12.73052 -12.62819 -12.51046 -12.35146 -12.15097 -12.04160 -11.77246 -11.43608 -11.20982 -10.99885 -10.84290 -10.80725 -10.64488 -10.44976 -10.19222 -10.09771 -9.88323 -9.79793 -9.60622 -9.45768 -9.39725 -8.66838 -8.53555 -8.47086 -6.64848 -5.82598 -3.30231 1.62738 2.18483 2.68013 2.71873 3.07200 3.32725 3.40927 3.42317 4.23528 4.31505 4.38917 4.44267 4.59756 4.83630 4.87392 4.87985 4.95753 5.00756 5.12476 5.22940 5.37945 5.38747 5.40266 5.47236 5.49525 5.56917 5.57608 5.62589 5.66577 5.77514 5.93507 5.97867 6.01595 6.04999 6.13461 6.18271 6.31758 6.34712 6.40189 6.45651 6.50944 6.64864 6.71901 6.76110 6.78099 6.86938 6.98717 7.29406 7.51497 7.60850 7.64332 7.75346 8.20931 8.42931 9.17901 9.79388 10.38426 11.25547 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.002986 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.257896 B = 9375.866181 C = 9895.193159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.044 4.044 3 H 0.097 0.903 4 C 0.540 3.460 5 O -0.534 6.534 6 N -0.607 5.607 7 C 0.095 3.905 8 C -0.106 4.106 9 C -0.092 4.092 10 C 0.121 3.879 11 C -0.094 4.094 12 C -0.135 4.135 13 C 0.144 3.856 14 N -0.589 5.589 15 C -0.251 4.251 16 H 0.064 0.936 17 C 0.005 3.995 18 N -0.903 5.903 19 Si 0.901 3.099 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.191 3.809 24 C 0.096 3.904 25 C -0.256 4.256 26 C 0.048 3.952 27 N -0.296 5.296 28 N -0.371 5.371 29 C 0.098 3.902 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.017 0.983 44 H 0.052 0.948 45 H 0.254 0.746 46 H 0.091 0.909 47 H 0.020 0.980 48 H 0.150 0.850 49 H 0.184 0.816 50 H 0.075 0.925 51 H 0.086 0.914 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 0.254 -18.579 19.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.067 4.067 3 H 0.115 0.885 4 C 0.326 3.674 5 O -0.410 6.410 6 N -0.341 5.341 7 C -0.028 4.028 8 C -0.144 4.144 9 C -0.094 4.094 10 C -0.002 4.002 11 C -0.132 4.132 12 C -0.174 4.174 13 C 0.017 3.983 14 N -0.311 5.311 15 C -0.380 4.380 16 H 0.082 0.918 17 C -0.193 4.193 18 N -0.547 5.547 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.065 3.935 24 C -0.032 4.032 25 C -0.285 4.285 26 C -0.138 4.138 27 N -0.117 5.117 28 N -0.154 5.154 29 C -0.044 4.044 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.109 0.891 47 H 0.038 0.962 48 H 0.168 0.832 49 H 0.201 0.799 50 H 0.094 0.906 51 H 0.104 0.896 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.724 0.459 -19.341 19.915 hybrid contribution -0.283 0.412 1.234 1.331 sum -5.008 0.870 -18.107 18.807 Atomic orbital electron populations 1.21646 0.90696 1.03969 1.02464 1.19873 0.98464 0.99349 0.89054 0.88497 1.19609 0.79637 0.84096 0.84037 1.90703 1.56213 1.28724 1.65396 1.48597 1.23882 1.28260 1.33315 1.22569 0.94219 0.86936 0.99067 1.22745 1.00146 0.97426 0.94095 1.21840 0.92499 0.93649 1.01432 1.22007 0.94236 0.95909 0.88006 1.21282 0.94655 0.98853 0.98366 1.22090 0.96570 0.99296 0.99452 1.20915 0.89929 0.97235 0.90171 1.43972 1.01100 1.33823 1.52222 1.19172 1.18216 0.95620 1.05027 0.91807 1.25159 1.00656 0.96890 0.96636 1.69965 1.27409 1.26851 1.30517 0.86238 0.77584 0.83072 0.79968 1.20276 1.21616 1.21656 1.20630 0.91462 0.95695 0.85736 1.20365 1.00940 0.93561 0.88298 1.21373 1.13029 0.94828 0.99317 1.23831 0.99260 0.97123 0.93560 1.77363 1.22488 0.95721 1.16149 1.48441 1.50882 1.06911 1.09131 1.21873 1.03857 0.75373 1.03288 0.91958 0.90669 0.91126 0.91867 0.91532 0.90247 0.89630 0.90787 0.91869 0.92477 0.93648 0.93211 0.92187 0.96543 0.92953 0.93584 0.89091 0.96209 0.83194 0.79913 0.90647 0.89576 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 8.74 37.15 0.32 -0.97 16 2 C -0.04 -0.49 2.62 -92.92 -0.24 -0.74 16 3 H 0.10 0.87 5.18 -51.93 -0.27 0.60 16 4 C 0.54 7.99 6.20 -10.98 -0.07 7.93 16 5 O -0.53 -9.60 16.35 5.56 0.09 -9.51 16 6 N -0.61 -9.00 3.33 -170.52 -0.57 -9.57 16 7 C 0.09 1.20 6.25 -2.30 -0.01 1.19 16 8 C -0.11 -1.65 5.74 -24.73 -0.14 -1.79 16 9 C -0.09 -1.57 0.55 -154.09 -0.09 -1.66 16 10 C 0.12 2.02 6.06 -3.33 -0.02 2.00 16 11 C -0.09 -1.48 4.55 -27.03 -0.12 -1.61 16 12 C -0.13 -2.16 5.90 -26.55 -0.16 -2.32 16 13 C 0.14 2.84 6.49 -3.71 -0.02 2.82 16 14 N -0.59 -13.72 2.84 -172.68 -0.49 -14.21 16 15 C -0.25 -6.47 9.59 -15.06 -0.14 -6.62 16 16 H 0.06 1.63 7.85 -52.49 -0.41 1.22 16 17 C 0.01 0.14 5.06 -17.43 -0.09 0.05 16 18 N -0.90 -25.23 11.04 55.49 0.61 -24.62 16 19 Si 0.90 20.93 29.57 -169.99 -5.03 15.90 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.19 4.22 3.77 -4.04 -0.02 4.21 16 24 C 0.10 1.14 5.85 -82.27 -0.48 0.66 16 25 C -0.26 -3.28 10.01 -40.01 -0.40 -3.68 16 26 C 0.05 0.55 12.03 -17.36 -0.21 0.35 16 27 N -0.30 -3.75 12.58 30.63 0.39 -3.36 16 28 N -0.37 -4.11 4.01 -63.89 -0.26 -4.37 16 29 C 0.10 0.67 11.27 59.85 0.67 1.34 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.85 8.02 -51.93 -0.42 0.43 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.76 7.74 -51.93 -0.40 0.36 16 34 H 0.07 0.69 6.85 -51.93 -0.36 0.33 16 35 H 0.08 1.39 7.91 -51.93 -0.41 0.98 16 36 H 0.09 1.32 6.00 -51.93 -0.31 1.01 16 37 H 0.07 1.37 7.80 -51.93 -0.40 0.97 16 38 H 0.06 1.05 7.83 -51.93 -0.41 0.64 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.04 0.66 7.46 -51.93 -0.39 0.27 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.96 6.23 -51.93 -0.32 0.63 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 1.02 7.94 -51.93 -0.41 0.61 16 45 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.09 2.29 6.00 -51.93 -0.31 1.98 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.15 2.02 7.63 -52.49 -0.40 1.62 16 49 H 0.18 1.54 8.06 -52.48 -0.42 1.12 16 50 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.09 0.44 6.98 -51.93 -0.36 0.08 16 52 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 400.61 15.07 6.04 6.04 Total: -1.00 -31.64 400.61 -8.96 -40.59 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.53 Total: 1.94 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -1.22 Total: 1.17 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.32 Total: -56.13 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.64 -8.96 -40.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040209194.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.023 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds