Wall clock time and date at job start Wed Apr 1 2020 04:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47366 * 2 1 4 4 C 1.50710 * 109.47005 * 119.99720 * 2 1 3 5 5 O 1.21280 * 119.99340 * 34.37319 * 4 2 1 6 6 N 1.34774 * 120.00098 * 214.37169 * 4 2 1 7 7 C 1.47481 * 125.66063 * 4.66625 * 6 4 2 8 8 C 1.55283 * 104.77498 * 155.88211 * 7 6 4 9 9 C 1.54504 * 101.41539 * 36.68344 * 8 7 6 10 10 C 1.47187 * 125.65991 * 184.96634 * 6 4 2 11 11 C 1.52233 * 110.24612 * 83.58780 * 9 8 7 12 12 C 1.53171 * 109.65450 * 62.92460 * 11 9 8 13 13 C 1.53185 * 109.27566 * 60.17060 * 12 11 9 14 14 N 1.46932 * 108.92714 * 304.78118 * 13 12 11 15 15 C 1.36941 * 120.70063 * 234.14252 * 14 13 12 16 16 H 1.07999 * 120.00199 * 31.27398 * 15 14 13 17 17 C 1.38814 * 119.99886 * 211.27892 * 15 14 13 18 18 N 1.31614 * 119.99721 * 10.11033 * 17 15 14 19 19 Si 1.86800 * 119.99750 * 190.11145 * 17 15 14 20 20 H 1.48501 * 109.47305 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47059 * 119.99936 * 19 17 15 22 22 H 1.48500 * 109.46968 * 239.99585 * 19 17 15 23 23 C 1.47085 * 118.60113 * 54.15548 * 14 13 12 24 24 C 1.50699 * 109.47466 * 239.99620 * 2 1 3 25 25 C 1.35312 * 126.12621 * 274.97849 * 24 2 1 26 26 C 1.39871 * 107.91841 * 180.02562 * 25 24 2 27 27 N 1.30839 * 108.20325 * 0.02562 * 26 25 24 28 28 N 1.34944 * 126.12418 * 95.03050 * 24 2 1 29 29 C 1.46499 * 126.04207 * 359.95517 * 28 24 2 30 30 H 1.09005 * 109.47321 * 54.99991 * 1 2 3 31 31 H 1.08998 * 109.47285 * 174.99481 * 1 2 3 32 32 H 1.09002 * 109.47500 * 295.00138 * 1 2 3 33 33 H 1.09001 * 110.35158 * 274.84150 * 7 6 4 34 34 H 1.09003 * 110.35468 * 37.13018 * 7 6 4 35 35 H 1.09003 * 111.23178 * 278.59150 * 8 7 6 36 36 H 1.09002 * 110.89798 * 154.63747 * 8 7 6 37 37 H 1.09004 * 109.91105 * 300.88328 * 10 6 4 38 38 H 1.08998 * 109.90853 * 62.15121 * 10 6 4 39 39 H 1.09004 * 109.44261 * 182.97222 * 11 9 8 40 40 H 1.08999 * 109.44865 * 302.90276 * 11 9 8 41 41 H 1.08998 * 109.50675 * 180.11374 * 12 11 9 42 42 H 1.09005 * 109.49781 * 300.19607 * 12 11 9 43 43 H 1.09002 * 109.56021 * 64.61131 * 13 12 11 44 44 H 1.08995 * 109.56694 * 184.83177 * 13 12 11 45 45 H 0.97007 * 119.99680 * 179.97438 * 18 17 15 46 46 H 1.08994 * 109.58023 * 187.75039 * 23 14 13 47 47 H 1.09000 * 109.57270 * 67.35848 * 23 14 13 48 48 H 1.07996 * 126.04191 * 0.06577 * 25 24 2 49 49 H 1.08003 * 125.90005 * 179.97438 * 26 25 24 50 50 H 1.08997 * 109.47449 * 270.02609 * 29 28 24 51 51 H 1.09006 * 109.46725 * 30.02846 * 29 28 24 52 52 H 1.09003 * 109.47069 * 150.02132 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 1.4170 -1.6542 1.6794 6 7 3.1652 -0.2968 1.8322 7 6 3.9560 0.8891 1.4538 8 6 4.7284 1.2780 2.7436 9 6 5.0514 -0.1114 3.3372 10 6 3.8219 -0.9574 2.9719 11 6 6.3081 -0.6802 2.6934 12 6 7.5042 0.2214 3.0135 13 6 7.6968 0.2859 4.5319 14 7 6.4407 0.7274 5.1533 15 6 6.4195 1.8056 5.9973 16 1 7.1150 2.6189 5.8520 17 6 5.5039 1.8532 7.0396 18 7 4.7945 0.7865 7.3414 19 14 5.2789 3.4311 8.0138 20 1 6.1885 4.4764 7.4799 21 1 3.8718 3.8904 7.8939 22 1 5.5977 3.1806 9.4423 23 6 5.2067 -0.0131 4.8500 24 6 2.0323 -0.7105 -1.2304 25 6 2.2089 -2.0453 -1.3646 26 6 2.6882 -2.2883 -2.6560 27 7 2.7960 -1.1404 -3.2746 28 7 2.3877 -0.1293 -2.3953 29 6 2.3525 1.3056 -2.6886 30 1 -0.3634 0.5895 -0.8418 31 1 -0.3634 -1.0237 -0.0897 32 1 -0.3634 0.4343 0.9314 33 1 4.6517 0.6409 0.6523 34 1 3.2975 1.7019 1.1473 35 1 4.0998 1.8560 3.4211 36 1 5.6416 1.8214 2.5010 37 1 3.1376 -1.0030 3.8191 38 1 4.1338 -1.9627 2.6888 39 1 6.4940 -1.6812 3.0827 40 1 6.1715 -0.7306 1.6132 41 1 8.4022 -0.1868 2.5498 42 1 7.3183 1.2235 2.6269 43 1 7.9626 -0.7020 4.9083 44 1 8.4917 0.9928 4.7693 45 1 4.1549 0.8196 8.0701 46 1 4.3511 0.5144 5.2715 47 1 5.2674 -1.0143 5.2767 48 1 2.0136 -2.7913 -0.6085 49 1 2.9286 -3.2561 -3.0706 50 1 1.3787 1.5682 -3.1019 51 1 2.5214 1.8684 -1.7705 52 1 3.1314 1.5478 -3.4117 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040209194.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:01 Heat of formation + Delta-G solvation = 47.840183 kcal Electronic energy + Delta-G solvation = -32240.697232 eV Core-core repulsion = 28241.643620 eV Total energy + Delta-G solvation = -3999.053612 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.48366 -41.43441 -39.87716 -37.32760 -35.32205 -34.77508 -33.91090 -32.76781 -31.72545 -30.59141 -30.11538 -27.65372 -27.58769 -27.15105 -25.18199 -24.29621 -23.63466 -22.45535 -22.13573 -21.28073 -20.00871 -19.41059 -18.56448 -18.18734 -18.03809 -16.88008 -16.73870 -16.57964 -16.26858 -15.76971 -15.62127 -15.40737 -15.06550 -14.80804 -14.69292 -14.62604 -14.24217 -14.15571 -13.98346 -13.85166 -13.65888 -13.44120 -13.34952 -13.27941 -13.16845 -12.95647 -12.89910 -12.74541 -12.54211 -12.32800 -12.15113 -12.12986 -11.85597 -11.73614 -11.62486 -11.35020 -11.17427 -11.04158 -10.92280 -10.53913 -10.25759 -9.70889 -9.53953 -8.58265 -7.83692 -5.34052 0.76011 1.30559 1.46431 1.48959 1.58426 1.69828 1.79005 1.97441 2.52100 3.24972 3.32710 3.41214 3.59272 3.67861 3.69177 3.78655 3.88557 3.95190 4.07122 4.25025 4.25470 4.33739 4.40482 4.45582 4.49588 4.58861 4.62186 4.62779 4.68246 4.71218 4.74518 4.76976 4.78938 4.81967 4.92839 4.98692 5.09198 5.11420 5.15223 5.18926 5.22339 5.29348 5.32394 5.41149 5.49116 5.62551 5.65627 5.70669 5.78022 5.99932 6.43647 6.48688 6.66760 7.04123 7.18698 7.88675 8.42641 9.22004 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.002986 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.257896 B = 9375.866181 C = 9895.193159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.032 4.032 3 H 0.129 0.871 4 C 0.535 3.465 5 O -0.574 6.574 6 N -0.609 5.609 7 C 0.102 3.898 8 C -0.101 4.101 9 C -0.083 4.083 10 C 0.127 3.873 11 C -0.088 4.088 12 C -0.122 4.122 13 C 0.137 3.863 14 N -0.604 5.604 15 C -0.251 4.251 16 H 0.069 0.931 17 C -0.049 4.049 18 N -0.938 5.938 19 Si 0.963 3.037 20 H -0.262 1.262 21 H -0.292 1.292 22 H -0.297 1.297 23 C 0.205 3.795 24 C 0.098 3.902 25 C -0.282 4.282 26 C 0.045 3.955 27 N -0.317 5.317 28 N -0.366 5.366 29 C 0.083 3.917 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.042 0.958 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.005 0.995 44 H 0.054 0.946 45 H 0.247 0.753 46 H 0.054 0.946 47 H -0.018 1.018 48 H 0.132 0.868 49 H 0.206 0.794 50 H 0.092 0.908 51 H 0.110 0.890 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.822 2.606 -21.776 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.055 4.055 3 H 0.147 0.853 4 C 0.324 3.676 5 O -0.453 6.453 6 N -0.342 5.342 7 C -0.019 4.019 8 C -0.139 4.139 9 C -0.085 4.085 10 C 0.003 3.997 11 C -0.126 4.126 12 C -0.160 4.160 13 C 0.012 3.988 14 N -0.327 5.327 15 C -0.381 4.381 16 H 0.086 0.914 17 C -0.244 4.244 18 N -0.584 5.584 19 Si 0.792 3.208 20 H -0.186 1.186 21 H -0.219 1.219 22 H -0.225 1.225 23 C 0.079 3.921 24 C -0.031 4.031 25 C -0.312 4.312 26 C -0.139 4.139 27 N -0.139 5.139 28 N -0.148 5.148 29 C -0.057 4.057 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.023 0.977 44 H 0.073 0.927 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.000 1.000 48 H 0.150 0.850 49 H 0.222 0.778 50 H 0.111 0.889 51 H 0.128 0.872 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.956 2.845 -22.590 23.110 hybrid contribution -0.477 -0.363 2.273 2.351 sum -4.433 2.482 -20.317 20.943 Atomic orbital electron populations 1.21658 0.89881 1.03338 1.03724 1.19853 0.98988 1.00140 0.86547 0.85284 1.20337 0.78911 0.83675 0.84723 1.90687 1.57306 1.30626 1.66701 1.48667 1.24152 1.28796 1.32540 1.22684 0.94691 0.86876 0.97659 1.22635 1.00551 0.95697 0.95044 1.21571 0.93668 0.95520 0.97771 1.21735 0.93649 0.96178 0.88114 1.21246 0.93475 0.98231 0.99648 1.21958 0.97858 1.00100 0.96115 1.21098 0.88404 0.96478 0.92832 1.44214 1.02658 1.33473 1.52371 1.19492 1.17482 0.96303 1.04831 0.91355 1.25871 1.01041 0.99520 0.98003 1.70153 1.28328 1.28844 1.31106 0.85263 0.77348 0.80170 0.78043 1.18631 1.21945 1.22473 1.20277 0.89956 0.92807 0.89088 1.20346 1.00636 0.93361 0.88779 1.21398 1.14689 0.95354 0.99712 1.24186 0.98678 0.98028 0.93049 1.77325 1.23326 0.96315 1.16973 1.48747 1.49668 1.08123 1.08303 1.22311 1.05283 0.73086 1.04978 0.89023 0.92662 0.91146 0.89697 0.88016 0.92781 0.88703 0.93966 0.92039 0.93313 0.90911 0.90156 0.91225 0.97652 0.92717 0.94391 0.92807 0.99958 0.84966 0.77767 0.88924 0.87186 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.74 71.98 0.63 -1.65 16 2 C -0.03 -0.63 2.62 -12.29 -0.03 -0.67 16 3 H 0.13 1.66 5.18 -2.39 -0.01 1.65 16 4 C 0.54 15.34 6.20 87.66 0.54 15.88 16 5 O -0.57 -21.14 16.35 -3.03 -0.05 -21.19 16 6 N -0.61 -17.25 3.33 -811.79 -2.70 -19.95 16 7 C 0.10 2.22 6.25 86.98 0.54 2.76 16 8 C -0.10 -2.97 5.74 31.89 0.18 -2.79 16 9 C -0.08 -2.84 0.55 -51.91 -0.03 -2.87 16 10 C 0.13 4.35 6.06 86.47 0.52 4.87 16 11 C -0.09 -2.61 4.55 30.40 0.14 -2.48 16 12 C -0.12 -3.55 5.90 30.71 0.18 -3.37 16 13 C 0.14 5.33 6.49 86.36 0.56 5.89 16 14 N -0.60 -28.64 2.84 -700.24 -1.99 -30.63 16 15 C -0.25 -13.09 9.59 84.03 0.81 -12.28 16 16 H 0.07 3.46 7.85 -2.91 -0.02 3.43 16 17 C -0.05 -2.67 5.06 84.86 0.43 -2.24 16 18 N -0.94 -54.95 11.04 21.65 0.24 -54.71 16 19 Si 0.96 43.76 29.57 68.60 2.03 45.79 16 20 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 23 C 0.20 9.52 3.77 86.06 0.32 9.84 16 24 C 0.10 2.09 5.85 41.40 0.24 2.33 16 25 C -0.28 -6.96 10.01 21.99 0.22 -6.74 16 26 C 0.05 0.99 12.03 85.24 1.02 2.01 16 27 N -0.32 -7.31 12.58 -57.02 -0.72 -8.02 16 28 N -0.37 -6.90 4.01 -356.03 -1.43 -8.33 16 29 C 0.08 0.76 11.27 127.77 1.44 2.20 16 30 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.05 1.22 8.02 -2.39 -0.02 1.20 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.58 7.74 -2.39 -0.02 1.56 16 34 H 0.10 1.55 6.85 -2.39 -0.02 1.54 16 35 H 0.05 1.86 7.91 -2.39 -0.02 1.85 16 36 H 0.09 2.62 6.00 -2.39 -0.01 2.61 16 37 H 0.04 1.69 7.80 -2.38 -0.02 1.68 16 38 H 0.06 2.11 7.83 -2.39 -0.02 2.09 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.82 7.46 -2.39 -0.02 1.80 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.07 1.94 6.23 -2.38 -0.01 1.93 16 43 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.05 2.07 7.94 -2.39 -0.02 2.05 16 45 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 46 H 0.05 2.89 6.00 -2.39 -0.01 2.88 16 47 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 48 H 0.13 3.68 7.63 -2.91 -0.02 3.66 16 49 H 0.21 3.17 8.06 -2.91 -0.02 3.15 16 50 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.11 0.48 6.98 -2.38 -0.02 0.46 16 52 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -73.22 400.61 4.02 -69.21 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.91 Total: 17.13 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 7.73 Total: 10.70 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -6.60 Total: -121.65 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.05 Total: -21.19 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -73.22 4.02 -69.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040209194.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.046 kcal (2) G-P(sol) polarization free energy of solvation -73.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds