Wall clock time and date at job start Wed Apr 1 2020 04:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46555 * 2 1 4 4 C 1.50699 * 109.46888 * 240.00674 * 2 1 3 5 5 O 1.21287 * 120.00044 * 250.81284 * 4 2 1 6 6 N 1.34778 * 120.00233 * 70.81801 * 4 2 1 7 7 C 1.48212 * 127.05111 * 184.82302 * 6 4 2 8 8 C 1.55043 * 103.34003 * 219.01423 * 7 6 4 9 9 C 1.54158 * 102.73221 * 323.02800 * 8 7 6 10 10 C 1.47606 * 127.02679 * 4.87553 * 6 4 2 11 11 C 1.52493 * 110.05250 * 262.54078 * 9 8 7 12 12 C 1.53134 * 109.60517 * 178.25550 * 11 9 8 13 13 C 1.53192 * 109.28274 * 60.51789 * 12 11 9 14 14 N 1.46926 * 108.89507 * 304.92568 * 13 12 11 15 15 C 1.36935 * 120.68170 * 234.04298 * 14 13 12 16 16 H 1.08001 * 120.00241 * 25.35964 * 15 14 13 17 17 C 1.38808 * 119.99906 * 205.36610 * 15 14 13 18 18 N 1.31619 * 120.00177 * 17.60704 * 17 15 14 19 19 Si 1.86797 * 120.00133 * 197.61393 * 17 15 14 20 20 H 1.48497 * 109.47287 * 59.99208 * 19 17 15 21 21 H 1.48498 * 109.47404 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46888 * 299.99712 * 19 17 15 23 23 C 1.47040 * 118.63690 * 54.02038 * 14 13 12 24 24 C 1.50698 * 109.47400 * 120.00259 * 2 1 3 25 25 C 1.35317 * 126.12413 * 85.02630 * 24 2 1 26 26 C 1.39874 * 107.91972 * 179.97438 * 25 24 2 27 27 N 1.30843 * 108.19845 * 359.97438 * 26 25 24 28 28 N 1.34941 * 126.12827 * 264.71736 * 24 2 1 29 29 C 1.46508 * 126.03800 * 0.03600 * 28 24 2 30 30 H 1.09000 * 109.47323 * 64.33922 * 1 2 3 31 31 H 1.09004 * 109.46699 * 184.33466 * 1 2 3 32 32 H 1.09001 * 109.47320 * 304.33605 * 1 2 3 33 33 H 1.09008 * 110.62052 * 100.56401 * 7 6 4 34 34 H 1.09001 * 110.80375 * 337.56078 * 7 6 4 35 35 H 1.09005 * 110.76259 * 204.72024 * 8 7 6 36 36 H 1.08999 * 110.75821 * 81.33859 * 8 7 6 37 37 H 1.09003 * 109.97711 * 35.26151 * 10 6 4 38 38 H 1.09004 * 109.96761 * 274.03174 * 10 6 4 39 39 H 1.08998 * 109.44747 * 298.29849 * 11 9 8 40 40 H 1.08997 * 109.45058 * 58.24685 * 11 9 8 41 41 H 1.08997 * 109.49730 * 180.45750 * 12 11 9 42 42 H 1.09001 * 109.50151 * 300.57416 * 12 11 9 43 43 H 1.08996 * 109.56941 * 64.75408 * 13 12 11 44 44 H 1.09008 * 109.56378 * 185.10610 * 13 12 11 45 45 H 0.97000 * 120.00058 * 179.97438 * 18 17 15 46 46 H 1.09002 * 109.57603 * 187.42442 * 23 14 13 47 47 H 1.08995 * 109.58564 * 67.01386 * 23 14 13 48 48 H 1.08000 * 126.04298 * 359.94062 * 25 24 2 49 49 H 1.07993 * 125.90044 * 179.97438 * 26 25 24 50 50 H 1.08993 * 109.47031 * 89.99544 * 29 28 24 51 51 H 1.08994 * 109.46806 * 210.00208 * 29 28 24 52 52 H 1.08999 * 109.46460 * 329.99343 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.5599 -1.7978 -1.1302 6 7 1.8953 -0.1370 -2.4427 7 6 2.2388 -0.7321 -3.7559 8 6 2.8455 0.4593 -4.5408 9 6 1.9820 1.6482 -4.0747 10 6 1.3734 1.2126 -2.7338 11 6 0.8803 1.9249 -5.0921 12 6 0.0029 3.0788 -4.5983 13 6 0.8635 4.3359 -4.4379 14 7 1.9945 4.0284 -3.5520 15 6 2.2401 4.7916 -2.4419 16 1 1.4349 5.3375 -1.9728 17 6 3.5242 4.8638 -1.9196 18 7 4.5548 4.5032 -2.6544 19 14 3.7894 5.4727 -0.1736 20 1 3.0656 4.5881 0.7744 21 1 5.2403 5.4541 0.1421 22 1 3.2730 6.8594 -0.0492 23 6 2.8570 2.8841 -3.8816 24 6 2.0324 -0.7104 1.2304 25 6 2.2090 -2.0453 1.3646 26 6 2.6883 -2.2883 2.6560 27 7 2.7960 -1.1405 3.2746 28 7 2.3923 -0.1289 2.3937 29 6 2.3630 1.3066 2.6850 30 1 -0.3634 0.4450 -0.9263 31 1 -0.3633 -1.0248 0.0777 32 1 -0.3634 0.5796 0.8486 33 1 1.3439 -1.1050 -4.2543 34 1 2.9729 -1.5295 -3.6395 35 1 2.7440 0.3060 -5.6153 36 1 3.8900 0.6100 -4.2680 37 1 1.6722 1.9052 -1.9468 38 1 0.2865 1.1829 -2.8103 39 1 1.3287 2.1935 -6.0486 40 1 0.2682 1.0316 -5.2162 41 1 -0.7888 3.2697 -5.3228 42 1 -0.4385 2.8148 -3.6372 43 1 1.2377 4.6489 -5.4126 44 1 0.2644 5.1351 -4.0012 45 1 5.4522 4.5540 -2.2895 46 1 3.5602 2.7102 -3.0671 47 1 3.4040 3.0917 -4.8012 48 1 2.0139 -2.7913 0.6084 49 1 2.9280 -3.2562 3.0708 50 1 1.3912 1.5734 3.1001 51 1 3.1445 1.5470 3.4057 52 1 2.5318 1.8673 1.7656 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040209196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:16 Heat of formation + Delta-G solvation = 70.445520 kcal Electronic energy + Delta-G solvation = -32985.569203 eV Core-core repulsion = 28987.495832 eV Total energy + Delta-G solvation = -3998.073371 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.28982 -40.09363 -38.42602 -35.76891 -34.24210 -33.15104 -32.84704 -31.47190 -30.06788 -29.26642 -28.60855 -26.59165 -25.92065 -25.39264 -24.57589 -22.86084 -22.28755 -21.11246 -20.58854 -19.94496 -18.86540 -18.18765 -16.99910 -16.72593 -16.29876 -15.81960 -15.45581 -15.05304 -14.83959 -14.40351 -14.24008 -14.09364 -13.93590 -13.57643 -13.39543 -13.26055 -13.06531 -12.86011 -12.69030 -12.51889 -12.33639 -12.30182 -12.16599 -11.98941 -11.72731 -11.70730 -11.33561 -11.22448 -11.07842 -10.95894 -10.76724 -10.50430 -10.48335 -10.35027 -10.29821 -9.92102 -9.66078 -9.50604 -9.44287 -9.12448 -8.60399 -8.40801 -8.26356 -6.81491 -5.90407 -3.30742 1.97188 2.56536 2.78340 3.02975 3.23938 3.26341 3.31862 3.35202 4.36905 4.40555 4.57668 4.72041 4.88837 4.98739 5.04216 5.13499 5.17222 5.24321 5.28989 5.33252 5.39500 5.48245 5.51765 5.54562 5.55583 5.61575 5.66015 5.77911 5.87575 5.91427 5.94141 5.99598 6.06557 6.07279 6.11423 6.27820 6.31490 6.35252 6.37218 6.44092 6.58358 6.64167 6.70566 6.81099 6.88012 6.89866 7.12530 7.21542 7.54316 7.67597 7.77556 7.85848 8.31424 8.33974 9.09008 9.73050 10.29205 11.17721 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009517 B = 0.004876 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.536281 B = 5741.040550 C = 7600.266332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.046 4.046 3 H 0.107 0.893 4 C 0.545 3.455 5 O -0.536 6.536 6 N -0.616 5.616 7 C 0.108 3.892 8 C -0.125 4.125 9 C -0.092 4.092 10 C 0.117 3.883 11 C -0.095 4.095 12 C -0.137 4.137 13 C 0.144 3.856 14 N -0.592 5.592 15 C -0.252 4.252 16 H 0.067 0.933 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.896 3.104 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.185 3.815 24 C 0.090 3.910 25 C -0.234 4.234 26 C 0.035 3.965 27 N -0.301 5.301 28 N -0.371 5.371 29 C 0.096 3.904 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.017 0.983 44 H 0.052 0.948 45 H 0.255 0.745 46 H 0.093 0.907 47 H 0.021 0.979 48 H 0.158 0.842 49 H 0.180 0.820 50 H 0.075 0.925 51 H 0.088 0.912 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.737 -8.791 0.744 12.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.069 4.069 3 H 0.125 0.875 4 C 0.333 3.667 5 O -0.413 6.413 6 N -0.349 5.349 7 C -0.015 4.015 8 C -0.163 4.163 9 C -0.095 4.095 10 C -0.005 4.005 11 C -0.132 4.132 12 C -0.176 4.176 13 C 0.017 3.983 14 N -0.314 5.314 15 C -0.382 4.382 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.725 3.275 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.208 1.208 23 C 0.059 3.941 24 C -0.037 4.037 25 C -0.263 4.263 26 C -0.150 4.150 27 N -0.123 5.123 28 N -0.154 5.154 29 C -0.046 4.046 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.111 0.889 47 H 0.039 0.961 48 H 0.176 0.824 49 H 0.197 0.803 50 H 0.093 0.907 51 H 0.107 0.893 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.931 -8.628 2.084 11.904 hybrid contribution 0.092 0.192 0.070 0.224 sum -7.839 -8.436 2.154 11.716 Atomic orbital electron populations 1.21715 0.91006 1.03196 1.03318 1.19728 0.98048 1.00188 0.88926 0.87467 1.19574 0.78626 0.85561 0.82966 1.90666 1.43814 1.21474 1.85369 1.48841 1.63464 1.17439 1.05165 1.22446 0.99636 0.96759 0.82609 1.22734 1.00289 0.93851 0.99452 1.21813 0.96669 0.97738 0.93284 1.22303 0.97284 0.81926 0.98961 1.21391 0.96342 0.97577 0.97930 1.22073 0.97829 0.97541 1.00182 1.20909 0.89743 0.93939 0.93687 1.44108 1.30484 1.30318 1.26531 1.19143 0.92483 1.24423 1.02108 0.91524 1.24963 0.95500 1.00525 0.98614 1.69992 0.97909 1.51841 1.34755 0.86476 0.76925 0.78946 0.85105 1.21143 1.21609 1.20803 1.20836 0.90691 0.82271 1.00308 1.20339 1.01594 0.93568 0.88207 1.21516 1.11642 0.95088 0.98008 1.23842 1.00250 0.96909 0.94032 1.77299 1.22754 0.95807 1.16458 1.48427 1.50898 1.06748 1.09337 1.21903 1.03630 0.75364 1.03702 0.90841 0.91553 0.91398 0.91497 0.90291 0.90491 0.90529 0.89371 0.92042 0.92253 0.93402 0.93061 0.92305 0.96516 0.92921 0.93479 0.88853 0.96143 0.82450 0.80292 0.90689 0.89284 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 9.11 37.16 0.34 -1.24 16 2 C -0.05 -0.67 2.33 -92.92 -0.22 -0.88 16 3 H 0.11 1.60 6.15 -51.93 -0.32 1.28 16 4 C 0.55 8.94 7.09 -10.98 -0.08 8.86 16 5 O -0.54 -9.99 13.70 5.55 0.08 -9.92 16 6 N -0.62 -9.45 3.30 -169.79 -0.56 -10.01 16 7 C 0.11 1.48 7.11 -2.02 -0.01 1.47 16 8 C -0.12 -1.78 6.15 -25.05 -0.15 -1.93 16 9 C -0.09 -1.48 0.62 -154.05 -0.09 -1.57 16 10 C 0.12 1.82 4.49 -3.14 -0.01 1.80 16 11 C -0.09 -1.34 4.40 -26.92 -0.12 -1.46 16 12 C -0.14 -2.02 5.87 -26.56 -0.16 -2.18 16 13 C 0.14 2.66 6.50 -3.71 -0.02 2.64 16 14 N -0.59 -13.06 2.78 -172.56 -0.48 -13.54 16 15 C -0.25 -6.20 9.62 -15.06 -0.14 -6.35 16 16 H 0.07 1.61 7.88 -52.49 -0.41 1.20 16 17 C 0.00 0.07 4.93 -17.43 -0.09 -0.02 16 18 N -0.90 -24.45 11.05 55.49 0.61 -23.84 16 19 Si 0.90 20.09 29.59 -169.99 -5.03 15.06 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.19 3.89 3.62 -3.93 -0.01 3.87 16 24 C 0.09 1.42 5.79 -82.27 -0.48 0.94 16 25 C -0.23 -3.68 9.22 -40.01 -0.37 -4.05 16 26 C 0.03 0.51 12.03 -17.36 -0.21 0.30 16 27 N -0.30 -4.91 12.58 30.63 0.39 -4.53 16 28 N -0.37 -5.78 4.01 -63.89 -0.26 -6.04 16 29 C 0.10 1.21 11.27 59.85 0.67 1.88 16 30 H 0.07 0.82 6.52 -51.93 -0.34 0.48 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.08 1.12 7.83 -51.93 -0.41 0.72 16 35 H 0.08 0.94 7.83 -51.93 -0.41 0.54 16 36 H 0.08 1.22 7.84 -51.93 -0.41 0.81 16 37 H 0.09 1.59 6.72 -51.93 -0.35 1.25 16 38 H 0.06 0.87 5.83 -51.93 -0.30 0.56 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.87 6.65 -51.93 -0.35 0.52 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.05 0.96 7.92 -51.92 -0.41 0.55 16 45 H 0.26 6.84 8.31 -40.82 -0.34 6.51 16 46 H 0.09 2.28 5.90 -51.93 -0.31 1.97 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.16 2.51 6.47 -52.49 -0.34 2.17 16 49 H 0.18 1.97 8.06 -52.49 -0.42 1.54 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 52 H 0.09 1.15 6.97 -51.93 -0.36 0.78 16 LS Contribution 396.76 15.07 5.98 5.98 Total: -1.00 -30.06 396.76 -8.92 -38.98 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -8.49 Total: 5.75 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -1.16 Total: 2.09 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.30 Total: -57.95 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.06 -8.92 -38.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040209196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.423 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds