Wall clock time and date at job start Wed Apr 1 2020 04:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46555 * 2 1 4 4 C 1.50699 * 109.46888 * 240.00674 * 2 1 3 5 5 O 1.21287 * 120.00044 * 250.81284 * 4 2 1 6 6 N 1.34778 * 120.00233 * 70.81801 * 4 2 1 7 7 C 1.48212 * 127.05111 * 184.82302 * 6 4 2 8 8 C 1.55043 * 103.34003 * 219.01423 * 7 6 4 9 9 C 1.54158 * 102.73221 * 323.02800 * 8 7 6 10 10 C 1.47606 * 127.02679 * 4.87553 * 6 4 2 11 11 C 1.52493 * 110.05250 * 262.54078 * 9 8 7 12 12 C 1.53134 * 109.60517 * 178.25550 * 11 9 8 13 13 C 1.53192 * 109.28274 * 60.51789 * 12 11 9 14 14 N 1.46926 * 108.89507 * 304.92568 * 13 12 11 15 15 C 1.36935 * 120.68170 * 234.04298 * 14 13 12 16 16 H 1.08001 * 120.00241 * 25.35964 * 15 14 13 17 17 C 1.38808 * 119.99906 * 205.36610 * 15 14 13 18 18 N 1.31619 * 120.00177 * 17.60704 * 17 15 14 19 19 Si 1.86797 * 120.00133 * 197.61393 * 17 15 14 20 20 H 1.48497 * 109.47287 * 59.99208 * 19 17 15 21 21 H 1.48498 * 109.47404 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46888 * 299.99712 * 19 17 15 23 23 C 1.47040 * 118.63690 * 54.02038 * 14 13 12 24 24 C 1.50698 * 109.47400 * 120.00259 * 2 1 3 25 25 C 1.35317 * 126.12413 * 85.02630 * 24 2 1 26 26 C 1.39874 * 107.91972 * 179.97438 * 25 24 2 27 27 N 1.30843 * 108.19845 * 359.97438 * 26 25 24 28 28 N 1.34941 * 126.12827 * 264.71736 * 24 2 1 29 29 C 1.46508 * 126.03800 * 0.03600 * 28 24 2 30 30 H 1.09000 * 109.47323 * 64.33922 * 1 2 3 31 31 H 1.09004 * 109.46699 * 184.33466 * 1 2 3 32 32 H 1.09001 * 109.47320 * 304.33605 * 1 2 3 33 33 H 1.09008 * 110.62052 * 100.56401 * 7 6 4 34 34 H 1.09001 * 110.80375 * 337.56078 * 7 6 4 35 35 H 1.09005 * 110.76259 * 204.72024 * 8 7 6 36 36 H 1.08999 * 110.75821 * 81.33859 * 8 7 6 37 37 H 1.09003 * 109.97711 * 35.26151 * 10 6 4 38 38 H 1.09004 * 109.96761 * 274.03174 * 10 6 4 39 39 H 1.08998 * 109.44747 * 298.29849 * 11 9 8 40 40 H 1.08997 * 109.45058 * 58.24685 * 11 9 8 41 41 H 1.08997 * 109.49730 * 180.45750 * 12 11 9 42 42 H 1.09001 * 109.50151 * 300.57416 * 12 11 9 43 43 H 1.08996 * 109.56941 * 64.75408 * 13 12 11 44 44 H 1.09008 * 109.56378 * 185.10610 * 13 12 11 45 45 H 0.97000 * 120.00058 * 179.97438 * 18 17 15 46 46 H 1.09002 * 109.57603 * 187.42442 * 23 14 13 47 47 H 1.08995 * 109.58564 * 67.01386 * 23 14 13 48 48 H 1.08000 * 126.04298 * 359.94062 * 25 24 2 49 49 H 1.07993 * 125.90044 * 179.97438 * 26 25 24 50 50 H 1.08993 * 109.47031 * 89.99544 * 29 28 24 51 51 H 1.08994 * 109.46806 * 210.00208 * 29 28 24 52 52 H 1.08999 * 109.46460 * 329.99343 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.5599 -1.7978 -1.1302 6 7 1.8953 -0.1370 -2.4427 7 6 2.2388 -0.7321 -3.7559 8 6 2.8455 0.4593 -4.5408 9 6 1.9820 1.6482 -4.0747 10 6 1.3734 1.2126 -2.7338 11 6 0.8803 1.9249 -5.0921 12 6 0.0029 3.0788 -4.5983 13 6 0.8635 4.3359 -4.4379 14 7 1.9945 4.0284 -3.5520 15 6 2.2401 4.7916 -2.4419 16 1 1.4349 5.3375 -1.9728 17 6 3.5242 4.8638 -1.9196 18 7 4.5548 4.5032 -2.6544 19 14 3.7894 5.4727 -0.1736 20 1 3.0656 4.5881 0.7744 21 1 5.2403 5.4541 0.1421 22 1 3.2730 6.8594 -0.0492 23 6 2.8570 2.8841 -3.8816 24 6 2.0324 -0.7104 1.2304 25 6 2.2090 -2.0453 1.3646 26 6 2.6883 -2.2883 2.6560 27 7 2.7960 -1.1405 3.2746 28 7 2.3923 -0.1289 2.3937 29 6 2.3630 1.3066 2.6850 30 1 -0.3634 0.4450 -0.9263 31 1 -0.3633 -1.0248 0.0777 32 1 -0.3634 0.5796 0.8486 33 1 1.3439 -1.1050 -4.2543 34 1 2.9729 -1.5295 -3.6395 35 1 2.7440 0.3060 -5.6153 36 1 3.8900 0.6100 -4.2680 37 1 1.6722 1.9052 -1.9468 38 1 0.2865 1.1829 -2.8103 39 1 1.3287 2.1935 -6.0486 40 1 0.2682 1.0316 -5.2162 41 1 -0.7888 3.2697 -5.3228 42 1 -0.4385 2.8148 -3.6372 43 1 1.2377 4.6489 -5.4126 44 1 0.2644 5.1351 -4.0012 45 1 5.4522 4.5540 -2.2895 46 1 3.5602 2.7102 -3.0671 47 1 3.4040 3.0917 -4.8012 48 1 2.0139 -2.7913 0.6084 49 1 2.9280 -3.2562 3.0708 50 1 1.3912 1.5734 3.1001 51 1 3.1445 1.5470 3.4057 52 1 2.5318 1.8673 1.7656 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040209196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:15 Heat of formation + Delta-G solvation = 53.717279 kcal Electronic energy + Delta-G solvation = -32986.294594 eV Core-core repulsion = 28987.495832 eV Total energy + Delta-G solvation = -3998.798762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.45732 -41.36165 -39.76659 -37.22563 -35.39509 -34.76708 -33.95480 -32.86828 -31.69101 -30.50872 -29.75557 -27.66206 -27.41645 -26.93926 -25.73644 -24.10696 -23.82194 -22.28689 -21.93350 -21.15049 -20.12153 -19.55112 -18.49051 -18.19085 -17.49069 -17.04652 -16.78270 -16.52899 -16.15587 -15.72736 -15.53633 -15.40324 -15.30854 -14.88484 -14.69229 -14.50634 -14.42477 -14.14340 -13.80700 -13.75550 -13.54661 -13.41569 -13.31928 -13.15036 -13.06677 -12.88740 -12.82892 -12.76810 -12.51845 -12.33396 -12.21806 -12.18908 -11.82902 -11.79010 -11.66388 -11.36889 -11.01401 -10.96436 -10.74895 -10.48291 -10.28436 -9.65734 -9.44308 -8.64570 -7.83825 -5.25078 0.80253 1.44116 1.46116 1.47010 1.52988 1.53510 1.87042 2.08346 2.52058 3.25809 3.30115 3.40832 3.60600 3.66710 3.78884 3.90871 3.94480 4.01468 4.06162 4.28241 4.29972 4.31371 4.36818 4.42533 4.52568 4.54552 4.61053 4.64169 4.67065 4.75776 4.81610 4.83658 4.85088 4.92239 4.99871 5.05092 5.10691 5.14031 5.21035 5.21650 5.28518 5.28818 5.42434 5.45880 5.56135 5.65347 5.72085 5.75155 5.83470 5.99148 6.41116 6.52404 6.69991 7.08264 7.18500 7.92558 8.42658 9.21375 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009517 B = 0.004876 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.536281 B = 5741.040550 C = 7600.266332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.041 4.041 3 H 0.099 0.901 4 C 0.540 3.460 5 O -0.563 6.563 6 N -0.616 5.616 7 C 0.110 3.890 8 C -0.119 4.119 9 C -0.086 4.086 10 C 0.128 3.872 11 C -0.090 4.090 12 C -0.126 4.126 13 C 0.137 3.863 14 N -0.607 5.607 15 C -0.246 4.246 16 H 0.071 0.929 17 C -0.049 4.049 18 N -0.936 5.936 19 Si 0.945 3.055 20 H -0.264 1.264 21 H -0.307 1.307 22 H -0.278 1.278 23 C 0.198 3.802 24 C 0.082 3.918 25 C -0.249 4.249 26 C 0.037 3.963 27 N -0.326 5.326 28 N -0.379 5.379 29 C 0.089 3.911 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.008 0.992 44 H 0.051 0.949 45 H 0.244 0.756 46 H 0.052 0.948 47 H -0.012 1.012 48 H 0.153 0.847 49 H 0.211 0.789 50 H 0.098 0.902 51 H 0.094 0.906 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.715 -9.732 0.420 15.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.064 4.064 3 H 0.117 0.883 4 C 0.328 3.672 5 O -0.443 6.443 6 N -0.349 5.349 7 C -0.012 4.012 8 C -0.158 4.158 9 C -0.089 4.089 10 C 0.006 3.994 11 C -0.128 4.128 12 C -0.165 4.165 13 C 0.011 3.989 14 N -0.330 5.330 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.244 4.244 18 N -0.583 5.583 19 Si 0.774 3.226 20 H -0.189 1.189 21 H -0.234 1.234 22 H -0.204 1.204 23 C 0.072 3.928 24 C -0.046 4.046 25 C -0.278 4.278 26 C -0.148 4.148 27 N -0.148 5.148 28 N -0.162 5.162 29 C -0.052 4.052 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.026 0.974 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.006 0.994 48 H 0.171 0.829 49 H 0.228 0.772 50 H 0.117 0.883 51 H 0.113 0.887 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.959 -9.555 1.747 14.644 hybrid contribution 1.046 0.555 0.091 1.187 sum -9.913 -9.000 1.838 13.515 Atomic orbital electron populations 1.21704 0.88600 1.03758 1.04384 1.19745 0.99931 0.99059 0.87714 0.88313 1.19906 0.78267 0.85376 0.83665 1.90651 1.45071 1.22743 1.85793 1.48906 1.63050 1.17357 1.05587 1.22581 1.00810 0.95996 0.81781 1.22699 0.98420 0.93432 1.01252 1.21629 0.96919 0.95606 0.94706 1.22162 0.98501 0.81313 0.97463 1.21393 0.95682 0.98862 0.96824 1.21960 0.97708 0.95309 1.01508 1.21106 0.89031 0.96368 0.92357 1.44360 1.31341 1.30546 1.26717 1.19458 0.92271 1.23331 1.02583 0.91096 1.25580 0.95477 1.01791 1.01576 1.70172 0.97740 1.54274 1.36071 0.85665 0.75866 0.78949 0.82129 1.18906 1.23395 1.20413 1.20517 0.90852 0.84432 0.96988 1.20582 1.01484 0.93915 0.88626 1.21601 1.12511 0.95196 0.98486 1.24362 0.99046 0.97812 0.93533 1.77256 1.23762 0.96455 1.17347 1.48659 1.50760 1.07541 1.09240 1.22103 1.05277 0.74069 1.03725 0.89893 0.91252 0.90106 0.88224 0.91019 0.87693 0.93346 0.92324 0.89351 0.92223 0.89789 0.89923 0.91763 0.97379 0.92996 0.94671 0.92939 0.99376 0.82929 0.77202 0.88320 0.88695 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.11 71.98 0.66 -2.04 16 2 C -0.04 -1.17 2.33 -12.29 -0.03 -1.20 16 3 H 0.10 2.95 6.15 -2.39 -0.01 2.94 16 4 C 0.54 17.34 7.09 87.66 0.62 17.96 16 5 O -0.56 -20.91 13.70 -3.05 -0.04 -20.95 16 6 N -0.62 -18.03 3.30 -809.46 -2.67 -20.70 16 7 C 0.11 2.77 7.11 86.75 0.62 3.39 16 8 C -0.12 -3.25 6.15 31.69 0.19 -3.05 16 9 C -0.09 -2.63 0.62 -51.88 -0.03 -2.66 16 10 C 0.13 3.72 4.49 86.36 0.39 4.11 16 11 C -0.09 -2.20 4.40 30.47 0.13 -2.06 16 12 C -0.13 -3.23 5.87 30.70 0.18 -3.05 16 13 C 0.14 4.86 6.50 86.36 0.56 5.43 16 14 N -0.61 -26.88 2.78 -699.85 -1.94 -28.82 16 15 C -0.25 -12.22 9.62 84.03 0.81 -11.41 16 16 H 0.07 3.40 7.88 -2.91 -0.02 3.38 16 17 C -0.05 -2.58 4.93 84.86 0.42 -2.16 16 18 N -0.94 -53.31 11.05 21.65 0.24 -53.07 16 19 Si 0.94 41.99 29.59 68.60 2.03 44.02 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 21 H -0.31 -14.39 7.11 99.48 0.71 -13.68 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 C 0.20 8.54 3.62 86.16 0.31 8.85 16 24 C 0.08 2.53 5.79 41.41 0.24 2.77 16 25 C -0.25 -7.74 9.22 21.99 0.20 -7.54 16 26 C 0.04 1.05 12.03 85.24 1.03 2.08 16 27 N -0.33 -10.40 12.58 -57.02 -0.72 -11.12 16 28 N -0.38 -11.58 4.01 -356.03 -1.43 -13.01 16 29 C 0.09 2.17 11.27 127.77 1.44 3.61 16 30 H 0.08 1.60 6.52 -2.39 -0.02 1.58 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.93 8.14 -2.38 -0.02 1.92 16 34 H 0.07 1.95 7.83 -2.39 -0.02 1.93 16 35 H 0.10 2.27 7.83 -2.38 -0.02 2.25 16 36 H 0.05 1.59 7.84 -2.39 -0.02 1.57 16 37 H 0.06 2.10 6.72 -2.39 -0.02 2.08 16 38 H 0.09 2.14 5.83 -2.38 -0.01 2.12 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.06 1.61 6.65 -2.39 -0.02 1.60 16 43 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.05 1.82 7.92 -2.38 -0.02 1.81 16 45 H 0.24 13.88 8.31 -92.71 -0.77 13.11 16 46 H 0.05 2.70 5.90 -2.39 -0.01 2.69 16 47 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 48 H 0.15 4.85 6.47 -2.91 -0.02 4.83 16 49 H 0.21 4.27 8.06 -2.91 -0.02 4.25 16 50 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 51 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.08 2.12 6.97 -2.39 -0.02 2.10 16 Total: -1.00 -68.32 396.76 4.11 -64.21 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.91 Total: 26.44 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 7.74 Total: 13.01 kcal Atomic # 7 Polarization: -120.20 SS G_CDS: -6.52 Total: -126.72 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.04 Total: -20.95 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -68.32 4.11 -64.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040209196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.925 kcal (2) G-P(sol) polarization free energy of solvation -68.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds