Wall clock time and date at job start Wed Apr 1 2020 04:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46973 * 2 1 4 4 C 1.50696 * 109.47396 * 240.00022 * 2 1 3 5 5 O 1.21281 * 119.99710 * 333.56978 * 4 2 1 6 6 N 1.34771 * 120.00222 * 153.56779 * 4 2 1 7 7 C 1.47090 * 125.62642 * 5.31121 * 6 4 2 8 8 C 1.54470 * 107.30317 * 180.97985 * 7 6 4 9 9 C 1.54344 * 102.85665 * 21.47529 * 8 7 6 10 10 C 1.47575 * 125.62733 * 185.00300 * 6 4 2 11 11 C 1.52078 * 110.61557 * 83.53893 * 9 8 7 12 12 C 1.53189 * 109.67222 * 64.19098 * 11 9 8 13 13 C 1.53182 * 109.28283 * 59.96572 * 12 11 9 14 14 N 1.46933 * 108.92784 * 304.67443 * 13 12 11 15 15 C 1.36935 * 120.71636 * 234.28035 * 14 13 12 16 16 H 1.08005 * 120.00401 * 147.74802 * 15 14 13 17 17 C 1.38811 * 120.00148 * 327.75405 * 15 14 13 18 18 N 1.31621 * 120.00164 * 167.58943 * 17 15 14 19 19 Si 1.86796 * 119.99717 * 347.59413 * 17 15 14 20 20 H 1.48501 * 109.47699 * 86.21440 * 19 17 15 21 21 H 1.48502 * 109.47180 * 206.21529 * 19 17 15 22 22 H 1.48505 * 109.47363 * 326.21553 * 19 17 15 23 23 C 1.47112 * 118.57467 * 54.25856 * 14 13 12 24 24 C 1.50700 * 109.46774 * 119.99762 * 2 1 3 25 25 C 1.35321 * 126.12417 * 85.02950 * 24 2 1 26 26 C 1.39868 * 107.91975 * 179.75600 * 25 24 2 27 27 N 1.30838 * 108.20148 * 0.24011 * 26 25 24 28 28 N 1.34943 * 126.12937 * 265.19971 * 24 2 1 29 29 C 1.46508 * 126.03837 * 0.02562 * 28 24 2 30 30 H 1.08996 * 109.46994 * 295.66028 * 1 2 3 31 31 H 1.09003 * 109.46985 * 55.65343 * 1 2 3 32 32 H 1.08994 * 109.47320 * 175.65353 * 1 2 3 33 33 H 1.08999 * 109.87488 * 300.39959 * 7 6 4 34 34 H 1.08992 * 109.88070 * 61.40201 * 7 6 4 35 35 H 1.09003 * 110.73505 * 139.81732 * 8 7 6 36 36 H 1.08997 * 110.73788 * 263.13130 * 8 7 6 37 37 H 1.09003 * 110.37988 * 275.54423 * 10 6 4 38 38 H 1.08999 * 110.38189 * 37.89850 * 10 6 4 39 39 H 1.08997 * 109.43910 * 184.25329 * 11 9 8 40 40 H 1.08996 * 109.43520 * 304.17356 * 11 9 8 41 41 H 1.09003 * 109.50256 * 179.91090 * 12 11 9 42 42 H 1.09008 * 109.50427 * 299.97986 * 12 11 9 43 43 H 1.08999 * 109.56241 * 64.51200 * 13 12 11 44 44 H 1.09009 * 109.56139 * 184.73346 * 13 12 11 45 45 H 0.97003 * 119.99326 * 180.02562 * 18 17 15 46 46 H 1.09005 * 109.57443 * 187.93906 * 23 14 13 47 47 H 1.09003 * 109.57364 * 67.55556 * 23 14 13 48 48 H 1.07995 * 126.03991 * 0.02562 * 25 24 2 49 49 H 1.07993 * 125.89882 * 180.25701 * 26 25 24 50 50 H 1.08998 * 109.47032 * 270.25802 * 29 28 24 51 51 H 1.08994 * 109.46530 * 30.26395 * 29 28 24 52 52 H 1.09000 * 109.46979 * 150.25740 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 1.3478 -1.5579 -1.7633 6 7 3.2424 -0.4039 -1.7387 7 6 4.2169 0.5176 -1.1348 8 6 5.4397 0.5751 -2.0770 9 6 4.8558 0.1059 -3.4265 10 6 3.8108 -0.9424 -2.9895 11 6 4.1932 1.2648 -4.1551 12 6 5.2458 2.3188 -4.5124 13 6 6.3081 1.6866 -5.4170 14 7 6.8635 0.5037 -4.7452 15 6 8.2137 0.3763 -4.5559 16 1 8.5906 -0.1395 -3.6851 17 6 9.0980 0.9104 -5.4830 18 7 10.3778 1.0079 -5.1915 19 14 8.4717 1.4906 -7.1444 20 1 8.0025 2.8952 -7.0337 21 1 9.5690 1.4125 -8.1420 22 1 7.3455 0.6254 -7.5787 23 6 5.9378 -0.5408 -4.2800 24 6 2.0322 -0.7104 1.2305 25 6 2.2088 -2.0453 1.3648 26 6 2.6927 -2.2878 2.6546 27 7 2.7977 -1.1402 3.2741 28 7 2.3834 -0.1296 2.3969 29 6 2.3434 1.3049 2.6919 30 1 -0.3633 0.4450 0.9263 31 1 -0.3633 0.5798 -0.8485 32 1 -0.3633 -1.0246 -0.0779 33 1 3.7772 1.5102 -1.0374 34 1 4.5184 0.1482 -0.1548 35 1 5.8198 1.5938 -2.1542 36 1 6.2210 -0.1047 -1.7372 37 1 4.2886 -1.9048 -2.8060 38 1 3.0339 -1.0419 -3.7476 39 1 3.7228 0.8982 -5.0674 40 1 3.4363 1.7126 -3.5113 41 1 4.7683 3.1472 -5.0357 42 1 5.7160 2.6873 -3.6005 43 1 5.8530 1.3897 -6.3619 44 1 7.1032 2.4081 -5.6057 45 1 10.9956 1.3815 -5.8393 46 1 6.4831 -1.2734 -3.6850 47 1 5.4805 -1.0323 -5.1387 48 1 2.0150 -2.7911 0.6083 49 1 2.9375 -3.2551 3.0676 50 1 3.2973 1.7580 2.4220 51 1 1.5437 1.7718 2.1170 52 1 2.1594 1.4520 3.7561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040209197.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:23 Heat of formation + Delta-G solvation = 71.853048 kcal Electronic energy + Delta-G solvation = -32138.885468 eV Core-core repulsion = 28140.873133 eV Total energy + Delta-G solvation = -3998.012336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.68506 -40.41217 -38.77918 -36.16156 -34.47662 -33.26693 -33.00896 -31.33103 -30.91948 -29.57760 -29.33728 -27.00365 -26.64737 -25.38283 -24.34489 -23.03070 -22.09053 -21.54754 -21.29500 -20.44977 -19.08071 -18.16220 -17.32934 -17.09507 -16.78612 -16.07567 -15.72468 -15.49553 -15.24507 -14.90645 -14.24730 -14.05694 -13.98119 -13.83552 -13.68455 -13.52335 -13.42726 -13.17737 -12.98554 -12.90224 -12.69591 -12.60915 -12.37611 -12.28091 -12.15376 -12.07396 -11.63097 -11.50658 -11.50109 -10.95691 -10.91301 -10.79811 -10.54946 -10.48681 -10.05493 -9.97583 -9.89456 -9.64355 -9.49774 -9.47743 -8.74791 -8.68643 -8.62167 -6.94337 -5.97183 -3.41236 1.55928 2.11147 2.55010 2.62313 2.89718 3.26919 3.44607 3.46991 4.13978 4.19376 4.30280 4.48404 4.55205 4.61794 4.69581 4.78412 4.82678 4.92194 4.99313 5.07845 5.09110 5.19838 5.26684 5.30331 5.37990 5.39603 5.47506 5.47842 5.56786 5.60281 5.69314 5.77966 5.83968 5.87337 5.93811 5.95397 6.04611 6.10452 6.21230 6.27423 6.35077 6.43001 6.44088 6.50573 6.56060 6.61105 6.68675 6.69437 6.88851 7.43780 7.46395 7.96489 8.02646 8.30541 8.89683 9.67468 10.06775 11.18825 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.002793 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.635040 B =10023.778752 C =10496.590043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.043 4.043 3 H 0.098 0.902 4 C 0.543 3.457 5 O -0.534 6.534 6 N -0.608 5.608 7 C 0.100 3.900 8 C -0.108 4.108 9 C -0.085 4.085 10 C 0.118 3.882 11 C -0.092 4.092 12 C -0.135 4.135 13 C 0.119 3.881 14 N -0.603 5.603 15 C -0.259 4.259 16 H 0.084 0.916 17 C 0.024 3.976 18 N -0.914 5.914 19 Si 0.895 3.105 20 H -0.288 1.288 21 H -0.306 1.306 22 H -0.271 1.271 23 C 0.166 3.834 24 C 0.093 3.907 25 C -0.257 4.257 26 C 0.049 3.951 27 N -0.293 5.293 28 N -0.370 5.370 29 C 0.096 3.904 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.025 0.975 44 H 0.073 0.927 45 H 0.263 0.737 46 H 0.066 0.934 47 H 0.026 0.974 48 H 0.148 0.852 49 H 0.185 0.815 50 H 0.077 0.923 51 H 0.085 0.915 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.151 1.428 12.818 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.066 4.066 3 H 0.116 0.884 4 C 0.329 3.671 5 O -0.411 6.411 6 N -0.341 5.341 7 C -0.023 4.023 8 C -0.146 4.146 9 C -0.087 4.087 10 C -0.005 4.005 11 C -0.130 4.130 12 C -0.174 4.174 13 C -0.007 4.007 14 N -0.327 5.327 15 C -0.387 4.387 16 H 0.102 0.898 17 C -0.175 4.175 18 N -0.557 5.557 19 Si 0.726 3.274 20 H -0.216 1.216 21 H -0.234 1.234 22 H -0.196 1.196 23 C 0.039 3.961 24 C -0.035 4.035 25 C -0.286 4.286 26 C -0.137 4.137 27 N -0.114 5.114 28 N -0.153 5.153 29 C -0.045 4.045 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.043 0.957 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.044 0.956 48 H 0.166 0.834 49 H 0.201 0.799 50 H 0.096 0.904 51 H 0.104 0.896 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.062 1.730 13.640 23.503 hybrid contribution -0.306 0.136 -1.605 1.640 sum -19.368 1.866 12.035 22.879 Atomic orbital electron populations 1.21655 0.90701 1.04377 1.02121 1.19867 0.98442 0.99368 0.88970 0.88356 1.19611 0.80075 0.82739 0.84652 1.90707 1.56346 1.32419 1.61631 1.48536 1.15532 1.45244 1.24789 1.22192 0.90138 0.92654 0.97326 1.22550 0.95236 1.03853 0.92975 1.21671 0.95610 0.95369 0.96064 1.22292 0.95980 0.97006 0.85173 1.21184 0.97084 0.95468 0.99218 1.22073 0.97197 0.97116 1.01021 1.21447 0.95464 0.90017 0.93731 1.44286 1.03127 1.16362 1.68899 1.18875 0.79091 1.35724 1.05011 0.89799 1.25382 0.94916 0.99440 0.97724 1.69761 1.02390 1.47919 1.35638 0.86857 0.77241 0.78128 0.85146 1.21558 1.23420 1.19629 1.20694 0.89640 0.90700 0.95062 1.20375 1.01231 0.93545 0.88336 1.21332 1.13168 0.94697 0.99383 1.23838 0.99114 0.97165 0.93556 1.77390 1.22110 0.95729 1.16203 1.48463 1.50799 1.06996 1.09034 1.21895 1.03363 0.75320 1.03958 0.91960 0.91288 0.90420 0.91974 0.91959 0.89224 0.90264 0.91062 0.90501 0.92357 0.93083 0.92847 0.91576 0.95711 0.90903 0.92719 0.91535 0.95631 0.83405 0.79859 0.90432 0.89596 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 8.81 37.16 0.33 -0.79 16 2 C -0.04 -0.42 2.22 -92.93 -0.21 -0.62 16 3 H 0.10 0.76 6.59 -51.93 -0.34 0.41 16 4 C 0.54 6.94 6.24 -10.99 -0.07 6.87 16 5 O -0.53 -8.45 16.33 5.56 0.09 -8.36 16 6 N -0.61 -7.64 3.32 -170.62 -0.57 -8.21 16 7 C 0.10 1.13 5.94 -2.95 -0.02 1.11 16 8 C -0.11 -1.49 5.68 -25.26 -0.14 -1.64 16 9 C -0.08 -1.23 0.55 -153.97 -0.08 -1.32 16 10 C 0.12 1.60 5.81 -2.75 -0.02 1.59 16 11 C -0.09 -1.31 4.69 -27.10 -0.13 -1.43 16 12 C -0.13 -2.16 5.91 -26.54 -0.16 -2.32 16 13 C 0.12 2.43 4.13 -3.71 -0.02 2.41 16 14 N -0.60 -13.32 2.63 -172.75 -0.45 -13.77 16 15 C -0.26 -6.86 10.07 -15.06 -0.15 -7.01 16 16 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 17 C 0.02 0.68 5.35 -17.43 -0.09 0.59 16 18 N -0.91 -27.41 13.97 55.49 0.78 -26.63 16 19 Si 0.89 22.04 24.25 -169.99 -4.12 17.92 16 20 H -0.29 -6.78 6.43 56.52 0.36 -6.42 16 21 H -0.31 -7.74 7.11 56.52 0.40 -7.34 16 22 H -0.27 -6.57 6.58 56.52 0.37 -6.20 16 23 C 0.17 3.01 5.20 -4.10 -0.02 2.99 16 24 C 0.09 1.00 5.85 -82.26 -0.48 0.52 16 25 C -0.26 -3.01 10.01 -40.01 -0.40 -3.41 16 26 C 0.05 0.54 12.03 -17.36 -0.21 0.33 16 27 N -0.29 -3.55 12.58 30.62 0.39 -3.17 16 28 N -0.37 -3.81 4.01 -63.88 -0.26 -4.06 16 29 C 0.10 0.60 11.06 59.85 0.66 1.26 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.79 7.70 -51.93 -0.40 0.39 16 33 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.31 6.09 -51.93 -0.32 0.99 16 36 H 0.08 1.19 7.87 -51.93 -0.41 0.78 16 37 H 0.07 0.98 8.01 -51.93 -0.42 0.57 16 38 H 0.08 1.07 8.00 -51.93 -0.42 0.66 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.65 7.83 -51.93 -0.41 0.25 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.07 6.32 -51.92 -0.33 0.74 16 43 H 0.03 0.51 6.96 -51.93 -0.36 0.15 16 44 H 0.07 1.65 4.36 -51.92 -0.23 1.42 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.07 1.22 7.76 -51.93 -0.40 0.82 16 47 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.15 1.80 7.94 -52.49 -0.42 1.39 16 49 H 0.18 1.46 8.06 -52.49 -0.42 1.03 16 50 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.09 0.35 7.56 -51.93 -0.39 -0.04 16 52 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 396.99 15.07 5.98 5.98 Total: -1.00 -32.93 396.99 -8.03 -40.96 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -8.66 Total: 0.23 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.20 Total: -0.89 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.12 Total: -55.84 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.12 Total: 17.92 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.93 -8.03 -40.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040209197.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.812 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds