Wall clock time and date at job start Wed Apr 1 2020 04:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46973 * 2 1 4 4 C 1.50696 * 109.47396 * 240.00022 * 2 1 3 5 5 O 1.21281 * 119.99710 * 333.56978 * 4 2 1 6 6 N 1.34771 * 120.00222 * 153.56779 * 4 2 1 7 7 C 1.47090 * 125.62642 * 5.31121 * 6 4 2 8 8 C 1.54470 * 107.30317 * 180.97985 * 7 6 4 9 9 C 1.54344 * 102.85665 * 21.47529 * 8 7 6 10 10 C 1.47575 * 125.62733 * 185.00300 * 6 4 2 11 11 C 1.52078 * 110.61557 * 83.53893 * 9 8 7 12 12 C 1.53189 * 109.67222 * 64.19098 * 11 9 8 13 13 C 1.53182 * 109.28283 * 59.96572 * 12 11 9 14 14 N 1.46933 * 108.92784 * 304.67443 * 13 12 11 15 15 C 1.36935 * 120.71636 * 234.28035 * 14 13 12 16 16 H 1.08005 * 120.00401 * 147.74802 * 15 14 13 17 17 C 1.38811 * 120.00148 * 327.75405 * 15 14 13 18 18 N 1.31621 * 120.00164 * 167.58943 * 17 15 14 19 19 Si 1.86796 * 119.99717 * 347.59413 * 17 15 14 20 20 H 1.48501 * 109.47699 * 86.21440 * 19 17 15 21 21 H 1.48502 * 109.47180 * 206.21529 * 19 17 15 22 22 H 1.48505 * 109.47363 * 326.21553 * 19 17 15 23 23 C 1.47112 * 118.57467 * 54.25856 * 14 13 12 24 24 C 1.50700 * 109.46774 * 119.99762 * 2 1 3 25 25 C 1.35321 * 126.12417 * 85.02950 * 24 2 1 26 26 C 1.39868 * 107.91975 * 179.75600 * 25 24 2 27 27 N 1.30838 * 108.20148 * 0.24011 * 26 25 24 28 28 N 1.34943 * 126.12937 * 265.19971 * 24 2 1 29 29 C 1.46508 * 126.03837 * 0.02562 * 28 24 2 30 30 H 1.08996 * 109.46994 * 295.66028 * 1 2 3 31 31 H 1.09003 * 109.46985 * 55.65343 * 1 2 3 32 32 H 1.08994 * 109.47320 * 175.65353 * 1 2 3 33 33 H 1.08999 * 109.87488 * 300.39959 * 7 6 4 34 34 H 1.08992 * 109.88070 * 61.40201 * 7 6 4 35 35 H 1.09003 * 110.73505 * 139.81732 * 8 7 6 36 36 H 1.08997 * 110.73788 * 263.13130 * 8 7 6 37 37 H 1.09003 * 110.37988 * 275.54423 * 10 6 4 38 38 H 1.08999 * 110.38189 * 37.89850 * 10 6 4 39 39 H 1.08997 * 109.43910 * 184.25329 * 11 9 8 40 40 H 1.08996 * 109.43520 * 304.17356 * 11 9 8 41 41 H 1.09003 * 109.50256 * 179.91090 * 12 11 9 42 42 H 1.09008 * 109.50427 * 299.97986 * 12 11 9 43 43 H 1.08999 * 109.56241 * 64.51200 * 13 12 11 44 44 H 1.09009 * 109.56139 * 184.73346 * 13 12 11 45 45 H 0.97003 * 119.99326 * 180.02562 * 18 17 15 46 46 H 1.09005 * 109.57443 * 187.93906 * 23 14 13 47 47 H 1.09003 * 109.57364 * 67.55556 * 23 14 13 48 48 H 1.07995 * 126.03991 * 0.02562 * 25 24 2 49 49 H 1.07993 * 125.89882 * 180.25701 * 26 25 24 50 50 H 1.08998 * 109.47032 * 270.25802 * 29 28 24 51 51 H 1.08994 * 109.46530 * 30.26395 * 29 28 24 52 52 H 1.09000 * 109.46979 * 150.25740 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 1.3478 -1.5579 -1.7633 6 7 3.2424 -0.4039 -1.7387 7 6 4.2169 0.5176 -1.1348 8 6 5.4397 0.5751 -2.0770 9 6 4.8558 0.1059 -3.4265 10 6 3.8108 -0.9424 -2.9895 11 6 4.1932 1.2648 -4.1551 12 6 5.2458 2.3188 -4.5124 13 6 6.3081 1.6866 -5.4170 14 7 6.8635 0.5037 -4.7452 15 6 8.2137 0.3763 -4.5559 16 1 8.5906 -0.1395 -3.6851 17 6 9.0980 0.9104 -5.4830 18 7 10.3778 1.0079 -5.1915 19 14 8.4717 1.4906 -7.1444 20 1 8.0025 2.8952 -7.0337 21 1 9.5690 1.4125 -8.1420 22 1 7.3455 0.6254 -7.5787 23 6 5.9378 -0.5408 -4.2800 24 6 2.0322 -0.7104 1.2305 25 6 2.2088 -2.0453 1.3648 26 6 2.6927 -2.2878 2.6546 27 7 2.7977 -1.1402 3.2741 28 7 2.3834 -0.1296 2.3969 29 6 2.3434 1.3049 2.6919 30 1 -0.3633 0.4450 0.9263 31 1 -0.3633 0.5798 -0.8485 32 1 -0.3633 -1.0246 -0.0779 33 1 3.7772 1.5102 -1.0374 34 1 4.5184 0.1482 -0.1548 35 1 5.8198 1.5938 -2.1542 36 1 6.2210 -0.1047 -1.7372 37 1 4.2886 -1.9048 -2.8060 38 1 3.0339 -1.0419 -3.7476 39 1 3.7228 0.8982 -5.0674 40 1 3.4363 1.7126 -3.5113 41 1 4.7683 3.1472 -5.0357 42 1 5.7160 2.6873 -3.6005 43 1 5.8530 1.3897 -6.3619 44 1 7.1032 2.4081 -5.6057 45 1 10.9956 1.3815 -5.8393 46 1 6.4831 -1.2734 -3.6850 47 1 5.4805 -1.0323 -5.1387 48 1 2.0150 -2.7911 0.6083 49 1 2.9375 -3.2551 3.0676 50 1 3.2973 1.7580 2.4220 51 1 1.5437 1.7718 2.1170 52 1 2.1594 1.4520 3.7561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040209197.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:21 Heat of formation + Delta-G solvation = 51.002390 kcal Electronic energy + Delta-G solvation = -32139.789621 eV Core-core repulsion = 28140.873133 eV Total energy + Delta-G solvation = -3998.916488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.50275 -41.49983 -39.95132 -37.55870 -35.31808 -34.70952 -33.91310 -32.83432 -32.53470 -30.67281 -30.12021 -27.86550 -27.60387 -27.12620 -25.31660 -24.08826 -23.56126 -22.90917 -22.25740 -21.33145 -20.10843 -19.33979 -18.65277 -18.17868 -18.04821 -17.29789 -17.09159 -16.49100 -16.22746 -15.74122 -15.70101 -15.38601 -15.29360 -15.13949 -14.72261 -14.66897 -14.36074 -14.25782 -14.07985 -13.82596 -13.74618 -13.62680 -13.43799 -13.31481 -13.26195 -13.22068 -12.93665 -12.88600 -12.45692 -12.35208 -12.17263 -12.05719 -11.99976 -11.74258 -11.51149 -11.47480 -11.21687 -11.14682 -10.99692 -10.62734 -10.26895 -9.69200 -9.55229 -8.81651 -8.13318 -5.52378 0.75971 1.29953 1.31045 1.42579 1.50971 1.70080 1.77984 1.95289 2.42747 3.11117 3.20752 3.34261 3.43704 3.60503 3.66580 3.72381 3.82680 3.87615 4.07266 4.16620 4.21204 4.28371 4.33335 4.36115 4.43363 4.50673 4.55570 4.62616 4.63599 4.68284 4.69738 4.71092 4.78496 4.79682 4.84041 4.84328 5.00600 5.02234 5.04169 5.08650 5.10454 5.18754 5.21851 5.25696 5.30795 5.41624 5.58483 5.63836 5.92518 5.99820 6.16657 6.45960 6.66041 6.95029 7.04037 7.63727 8.06366 9.06694 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.002793 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.635040 B =10023.778752 C =10496.590043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.034 4.034 3 H 0.130 0.870 4 C 0.541 3.459 5 O -0.568 6.568 6 N -0.607 5.607 7 C 0.110 3.890 8 C -0.107 4.107 9 C -0.076 4.076 10 C 0.123 3.877 11 C -0.086 4.086 12 C -0.126 4.126 13 C 0.111 3.889 14 N -0.615 5.615 15 C -0.239 4.239 16 H 0.050 0.950 17 C -0.036 4.036 18 N -0.964 5.964 19 Si 0.955 3.045 20 H -0.269 1.269 21 H -0.318 1.318 22 H -0.264 1.264 23 C 0.163 3.837 24 C 0.097 3.903 25 C -0.282 4.282 26 C 0.043 3.957 27 N -0.321 5.321 28 N -0.367 5.367 29 C 0.082 3.918 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.028 0.972 44 H 0.050 0.950 45 H 0.260 0.740 46 H 0.052 0.948 47 H 0.030 0.970 48 H 0.135 0.865 49 H 0.203 0.797 50 H 0.089 0.911 51 H 0.114 0.886 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.241 3.669 13.280 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.057 4.057 3 H 0.147 0.853 4 C 0.329 3.671 5 O -0.447 6.447 6 N -0.340 5.340 7 C -0.012 4.012 8 C -0.145 4.145 9 C -0.078 4.078 10 C 0.000 4.000 11 C -0.123 4.123 12 C -0.165 4.165 13 C -0.014 4.014 14 N -0.339 5.339 15 C -0.369 4.369 16 H 0.068 0.932 17 C -0.230 4.230 18 N -0.611 5.611 19 Si 0.785 3.215 20 H -0.195 1.195 21 H -0.248 1.248 22 H -0.189 1.189 23 C 0.037 3.963 24 C -0.032 4.032 25 C -0.312 4.312 26 C -0.141 4.141 27 N -0.143 5.143 28 N -0.149 5.149 29 C -0.057 4.057 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.046 0.954 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.048 0.952 48 H 0.153 0.847 49 H 0.220 0.780 50 H 0.107 0.893 51 H 0.132 0.868 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.202 3.993 14.132 26.619 hybrid contribution 0.655 -0.640 -1.673 1.908 sum -21.547 3.353 12.459 25.114 Atomic orbital electron populations 1.21655 0.89719 1.03448 1.03728 1.19899 0.99093 1.00170 0.86579 0.85257 1.20148 0.79528 0.82255 0.85129 1.90698 1.57282 1.33916 1.62842 1.48567 1.15750 1.45351 1.24334 1.22163 0.88774 0.93997 0.96307 1.22450 0.95904 1.02881 0.93217 1.21463 0.94687 0.95832 0.95800 1.22105 0.95587 0.96331 0.85958 1.21158 0.96892 0.94449 0.99808 1.21969 0.96282 0.98063 1.00151 1.21521 0.96036 0.88931 0.94864 1.44363 1.01972 1.18303 1.69266 1.18782 0.81423 1.33395 1.03271 0.93217 1.26013 0.94977 1.00882 1.01112 1.69906 1.03830 1.50563 1.36757 0.85862 0.76286 0.78797 0.80522 1.19528 1.24759 1.18878 1.20793 0.89903 0.90004 0.95572 1.20470 1.00547 0.93315 0.88866 1.21384 1.14803 0.95362 0.99636 1.24187 0.98664 0.97945 0.93344 1.77342 1.23184 0.96440 1.17299 1.48764 1.49674 1.08106 1.08404 1.22309 1.05123 0.73149 1.05146 0.89796 0.90258 0.92617 0.88626 0.91749 0.89625 0.92491 0.91955 0.90457 0.91995 0.90320 0.90103 0.91686 0.95364 0.93221 0.93084 0.92912 0.95212 0.84743 0.77998 0.89287 0.86798 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.81 71.98 0.63 -1.15 16 2 C -0.03 -0.55 2.22 -12.29 -0.03 -0.58 16 3 H 0.13 1.27 6.59 -2.38 -0.02 1.26 16 4 C 0.54 12.56 6.24 87.66 0.55 13.10 16 5 O -0.57 -17.29 16.33 -3.03 -0.05 -17.34 16 6 N -0.61 -13.68 3.32 -812.10 -2.69 -16.37 16 7 C 0.11 2.12 5.94 86.77 0.52 2.63 16 8 C -0.11 -2.76 5.68 31.55 0.18 -2.58 16 9 C -0.08 -2.06 0.55 -51.83 -0.03 -2.09 16 10 C 0.12 3.15 5.81 86.63 0.50 3.65 16 11 C -0.09 -2.10 4.69 30.35 0.14 -1.96 16 12 C -0.13 -3.59 5.91 30.72 0.18 -3.41 16 13 C 0.11 4.32 4.13 86.36 0.36 4.68 16 14 N -0.61 -26.97 2.63 -700.44 -1.84 -28.81 16 15 C -0.24 -13.02 10.07 84.03 0.85 -12.18 16 16 H 0.05 3.00 8.06 -2.91 -0.02 2.97 16 17 C -0.04 -2.03 5.35 84.86 0.45 -1.58 16 18 N -0.96 -59.88 13.97 21.65 0.30 -59.58 16 19 Si 0.96 45.99 24.25 68.60 1.66 47.65 16 20 H -0.27 -11.98 6.43 99.48 0.64 -11.34 16 21 H -0.32 -15.83 7.11 99.48 0.71 -15.13 16 22 H -0.26 -12.22 6.58 99.48 0.65 -11.57 16 23 C 0.16 5.86 5.20 86.01 0.45 6.30 16 24 C 0.10 1.87 5.85 41.41 0.24 2.11 16 25 C -0.28 -6.45 10.01 21.99 0.22 -6.23 16 26 C 0.04 0.92 12.03 85.24 1.03 1.95 16 27 N -0.32 -7.34 12.58 -57.03 -0.72 -8.06 16 28 N -0.37 -6.61 4.01 -356.02 -1.43 -8.04 16 29 C 0.08 0.72 11.06 127.77 1.41 2.13 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 1.04 7.70 -2.39 -0.02 1.03 16 33 H 0.10 1.29 7.68 -2.39 -0.02 1.27 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 2.32 6.09 -2.39 -0.01 2.30 16 36 H 0.06 1.72 7.87 -2.39 -0.02 1.70 16 37 H 0.06 1.70 8.01 -2.39 -0.02 1.68 16 38 H 0.08 2.00 8.00 -2.39 -0.02 1.98 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 1.58 7.83 -2.39 -0.02 1.56 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.06 1.89 6.32 -2.38 -0.02 1.88 16 43 H 0.03 1.09 6.96 -2.39 -0.02 1.08 16 44 H 0.05 2.17 4.36 -2.38 -0.01 2.16 16 45 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 46 H 0.05 2.00 7.76 -2.38 -0.02 1.99 16 47 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.13 3.36 7.94 -2.91 -0.02 3.34 16 49 H 0.20 3.14 8.06 -2.91 -0.02 3.11 16 50 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.11 0.35 7.56 -2.39 -0.02 0.33 16 52 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -74.39 396.99 3.67 -70.72 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.78 Total: 15.03 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 7.65 Total: 4.81 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -6.38 Total: -120.86 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.05 Total: -17.34 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.66 Total: 47.65 kcal Total: -74.39 3.67 -70.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040209197.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.720 kcal (2) G-P(sol) polarization free energy of solvation -74.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds