Wall clock time and date at job start Wed Apr 1 2020 04:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47573 * 2 1 4 4 C 1.53002 * 109.47105 * 120.00359 * 2 1 3 5 5 C 1.50699 * 109.46777 * 294.99585 * 4 2 1 6 6 O 1.21273 * 120.00451 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99396 * 180.02562 * 5 4 2 8 8 C 1.48189 * 127.80720 * 0.02645 * 7 5 4 9 9 C 1.54502 * 104.63361 * 140.72246 * 8 7 5 10 10 C 1.53832 * 104.79264 * 23.79634 * 9 8 7 11 11 C 1.48262 * 127.79950 * 180.02562 * 7 5 4 12 12 C 1.52488 * 110.21913 * 240.96725 * 10 9 8 13 13 C 1.53126 * 109.64796 * 178.05981 * 12 10 9 14 14 C 1.52750 * 109.36239 * 60.37168 * 13 12 10 15 15 N 1.46927 * 109.08968 * 305.08899 * 14 13 12 16 16 C 1.36944 * 120.67720 * 234.05065 * 15 14 13 17 17 H 1.07998 * 120.00079 * 152.46694 * 16 15 14 18 18 C 1.38816 * 119.99680 * 332.74832 * 16 15 14 19 19 N 1.31612 * 120.00082 * 159.11423 * 18 16 15 20 20 Si 1.86798 * 119.99796 * 339.11231 * 18 16 15 21 21 H 1.48499 * 109.47300 * 93.32079 * 20 18 16 22 22 H 1.48507 * 109.46976 * 213.31591 * 20 18 16 23 23 H 1.48503 * 109.47459 * 333.31464 * 20 18 16 24 24 C 1.47025 * 118.65144 * 53.77011 * 15 14 13 25 25 N 1.46507 * 109.46698 * 239.99839 * 2 1 3 26 26 C 1.36886 * 126.39193 * 119.71584 * 25 2 1 27 27 C 1.34668 * 106.81521 * 179.84138 * 26 25 2 28 28 N 1.34134 * 108.02094 * 0.42335 * 27 26 25 29 29 C 1.30503 * 109.25216 * 359.72838 * 28 27 26 30 30 H 1.09002 * 109.47012 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46888 * 299.99417 * 1 2 3 32 32 H 1.08999 * 109.47319 * 59.99936 * 1 2 3 33 33 H 1.09002 * 109.46986 * 174.99542 * 4 2 1 34 34 H 1.08998 * 109.46927 * 54.99787 * 4 2 1 35 35 H 1.08995 * 110.40276 * 21.93083 * 8 7 5 36 36 H 1.09005 * 110.39822 * 259.51196 * 8 7 5 37 37 H 1.09000 * 110.37277 * 264.96602 * 9 8 7 38 38 H 1.09000 * 110.46726 * 142.67211 * 9 8 7 39 39 H 1.09004 * 110.42272 * 100.37108 * 11 7 5 40 40 H 1.09007 * 110.42360 * 337.89740 * 11 7 5 41 41 H 1.08997 * 109.44356 * 298.11945 * 12 10 9 42 42 H 1.08996 * 109.43448 * 58.01302 * 12 10 9 43 43 H 1.09002 * 109.49584 * 180.43975 * 13 12 10 44 44 H 1.08995 * 109.50362 * 300.54714 * 13 12 10 45 45 H 1.09000 * 109.49606 * 185.18022 * 14 13 12 46 46 H 1.09006 * 109.42360 * 64.94894 * 14 13 12 47 47 H 0.97002 * 119.99982 * 179.97438 * 19 18 16 48 48 H 1.09008 * 109.56747 * 67.32753 * 24 15 14 49 49 H 1.08995 * 109.57569 * 187.70918 * 24 15 14 50 50 H 1.07996 * 126.59464 * 359.97438 * 26 25 2 51 51 H 1.07995 * 125.99097 * 180.11878 * 27 26 25 52 52 H 1.08001 * 125.64640 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 8 1.0111 1.0868 2.3633 7 7 1.9854 -0.3916 3.7000 8 6 2.7479 -1.6167 4.0371 9 6 3.6690 -1.1946 5.2036 10 6 2.9656 0.0158 5.8413 11 6 1.6865 0.2294 5.0127 12 6 3.8588 1.2488 5.7574 13 6 3.1275 2.4557 6.3517 14 6 2.7962 2.1762 7.8164 15 7 2.0395 0.9200 7.9067 16 6 0.8284 0.8782 8.5445 17 1 0.0900 0.1455 8.2539 18 6 0.5475 1.7813 9.5606 19 7 -0.7013 2.0314 9.8921 20 14 1.9422 2.6415 10.4574 21 1 2.2180 3.9476 9.8068 22 1 1.5562 2.8658 11.8737 23 1 3.1613 1.7950 10.4048 24 6 2.6060 -0.2899 7.2928 25 7 2.0183 -0.6907 -1.1962 26 6 2.8039 -0.1538 -2.1802 27 6 3.0188 -1.1296 -3.0831 28 7 2.3741 -2.2296 -2.6665 29 6 1.7726 -1.9740 -1.5369 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 3.1264 -0.7996 1.2055 34 1 1.6054 -1.7199 1.2951 35 1 3.3414 -1.9420 3.1828 36 1 2.0712 -2.4099 4.3551 37 1 4.6509 -0.9080 4.8271 38 1 3.7624 -2.0041 5.9276 39 1 0.8398 -0.2686 5.4851 40 1 1.4844 1.2938 4.8928 41 1 4.7775 1.0700 6.3160 42 1 4.1023 1.4499 4.7142 43 1 3.7650 3.3372 6.2834 44 1 2.2042 2.6301 5.7993 45 1 2.1959 2.9936 8.2160 46 1 3.7209 2.0872 8.3867 47 1 -0.8975 2.6622 10.6024 48 1 3.5025 -0.5893 7.8359 49 1 1.8713 -1.0943 7.3255 50 1 3.1809 0.8573 -2.2232 51 1 3.6033 -1.0406 -3.9868 52 1 1.1766 -2.6731 -0.9690 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040425914.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:54 Heat of formation + Delta-G solvation = 59.044082 kcal Electronic energy + Delta-G solvation = -31536.388482 eV Core-core repulsion = 27537.820708 eV Total energy + Delta-G solvation = -3998.567774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.35336 -40.50873 -38.92021 -36.34404 -35.72384 -33.19490 -31.73477 -31.17758 -30.93211 -29.52814 -29.19028 -28.58847 -25.80744 -25.40022 -23.80240 -23.32766 -22.10037 -21.59609 -20.99270 -20.67674 -19.17426 -18.37455 -17.92938 -16.87763 -16.50964 -16.23499 -15.80050 -15.40981 -15.36840 -15.02971 -14.51401 -14.27353 -14.08160 -13.89056 -13.79896 -13.71284 -13.52645 -13.43170 -13.20380 -13.10437 -12.77334 -12.27514 -12.25142 -12.06270 -11.94816 -11.80607 -11.70665 -11.62031 -11.44726 -11.06041 -10.92524 -10.57244 -10.52505 -10.20920 -10.09133 -10.00569 -9.88927 -9.81479 -9.69443 -9.46900 -8.76572 -8.71878 -8.64893 -7.02835 -5.98847 -3.35148 1.80940 2.34085 2.46728 2.94856 2.98500 3.29415 3.45487 3.47851 4.05772 4.22579 4.35093 4.46534 4.49287 4.57295 4.62562 4.68552 4.76678 4.85126 5.01170 5.03640 5.08251 5.18655 5.20436 5.24331 5.32137 5.36514 5.45129 5.47107 5.50979 5.54025 5.70452 5.80593 5.84492 5.87541 5.90241 5.95422 6.05761 6.08259 6.13133 6.30029 6.30674 6.40320 6.47599 6.49385 6.53747 6.61964 6.68307 6.91111 6.92632 7.49958 7.83914 7.90243 8.01655 8.27779 8.88284 9.67574 10.04694 11.16857 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023280 B = 0.002361 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.445218 B =11855.541998 C =12129.951688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.110 0.890 4 C -0.147 4.147 5 C 0.537 3.463 6 O -0.538 6.538 7 N -0.620 5.620 8 C 0.100 3.900 9 C -0.126 4.126 10 C -0.088 4.088 11 C 0.125 3.875 12 C -0.092 4.092 13 C -0.140 4.140 14 C 0.125 3.875 15 N -0.604 5.604 16 C -0.261 4.261 17 H 0.085 0.915 18 C 0.025 3.975 19 N -0.906 5.906 20 Si 0.883 3.117 21 H -0.289 1.289 22 H -0.304 1.304 23 H -0.271 1.271 24 C 0.164 3.836 25 N -0.453 5.453 26 C -0.054 4.054 27 C -0.034 4.034 28 N -0.497 5.497 29 C 0.181 3.819 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.024 0.976 47 H 0.263 0.737 48 H 0.027 0.973 49 H 0.065 0.935 50 H 0.172 0.828 51 H 0.168 0.832 52 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.525 -7.070 -19.058 22.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.046 3.954 3 H 0.128 0.872 4 C -0.188 4.188 5 C 0.325 3.675 6 O -0.416 6.416 7 N -0.353 5.353 8 C -0.024 4.024 9 C -0.164 4.164 10 C -0.090 4.090 11 C 0.004 3.996 12 C -0.130 4.130 13 C -0.179 4.179 14 C 0.000 4.000 15 N -0.328 5.328 16 C -0.389 4.389 17 H 0.103 0.897 18 C -0.175 4.175 19 N -0.549 5.549 20 Si 0.714 3.286 21 H -0.217 1.217 22 H -0.232 1.232 23 H -0.196 1.196 24 C 0.038 3.962 25 N -0.136 5.136 26 C -0.187 4.187 27 C -0.182 4.182 28 N -0.216 5.216 29 C -0.101 4.101 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.042 0.958 47 H 0.073 0.927 48 H 0.045 0.955 49 H 0.083 0.917 50 H 0.190 0.810 51 H 0.185 0.815 52 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 8.943 -7.086 -19.373 22.483 hybrid contribution 0.855 1.305 1.073 1.893 sum 9.797 -5.780 -18.300 21.547 Atomic orbital electron populations 1.22308 0.92174 1.03094 1.04919 1.21176 0.96400 0.96874 0.80991 0.87238 1.21966 1.03654 1.00855 0.92305 1.19690 0.79572 0.85339 0.82937 1.90720 1.40508 1.24634 1.85743 1.49133 1.54754 1.25497 1.05938 1.22471 0.94320 0.87467 0.98103 1.22569 0.98360 0.98574 0.96947 1.21638 0.94733 0.94726 0.97939 1.22467 0.97031 1.00305 0.79760 1.21342 0.97605 0.94504 0.99531 1.22039 1.00143 0.96606 0.99096 1.21244 0.95180 0.89930 0.93644 1.44349 1.21486 1.02631 1.64298 1.18861 0.89280 1.18498 1.12217 0.89746 1.25254 0.95854 0.98607 0.97745 1.69837 1.17258 1.35980 1.31835 0.86945 0.83647 0.79196 0.78797 1.21713 1.23237 1.19600 1.20911 0.96882 0.89950 0.88504 1.45808 1.38006 1.11392 1.18363 1.22792 1.02429 1.01271 0.92251 1.22299 1.04817 0.89600 1.01477 1.70312 1.12408 1.28298 1.10533 1.24876 1.03867 0.85511 0.95881 0.92140 0.88114 0.91813 0.88277 0.88135 0.90814 0.90663 0.91095 0.89916 0.90361 0.89288 0.92342 0.93223 0.92758 0.91457 0.91044 0.95821 0.92749 0.95495 0.91659 0.81030 0.81496 0.78308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 8.98 37.16 0.33 -1.13 16 2 C 0.15 1.25 2.70 -67.92 -0.18 1.06 16 3 H 0.11 0.99 7.90 -51.93 -0.41 0.58 16 4 C -0.15 -1.18 4.16 -27.88 -0.12 -1.30 16 5 C 0.54 6.47 7.63 -10.99 -0.08 6.39 16 6 O -0.54 -8.41 14.24 5.56 0.08 -8.33 16 7 N -0.62 -7.50 3.32 -169.41 -0.56 -8.07 16 8 C 0.10 0.89 6.92 -2.32 -0.02 0.87 16 9 C -0.13 -1.27 6.29 -25.51 -0.16 -1.43 16 10 C -0.09 -1.23 0.68 -154.06 -0.11 -1.34 16 11 C 0.13 1.92 5.78 -2.61 -0.02 1.91 16 12 C -0.09 -1.33 4.48 -26.93 -0.12 -1.45 16 13 C -0.14 -2.40 5.86 -26.79 -0.16 -2.55 16 14 C 0.13 2.62 4.17 -3.94 -0.02 2.60 16 15 N -0.60 -13.36 2.61 -172.84 -0.45 -13.81 16 16 C -0.26 -6.92 10.04 -15.05 -0.15 -7.07 16 17 H 0.08 2.39 8.05 -52.49 -0.42 1.97 16 18 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 19 N -0.91 -27.27 13.97 55.49 0.78 -26.49 16 20 Si 0.88 21.95 24.36 -169.99 -4.14 17.81 16 21 H -0.29 -7.00 6.63 56.52 0.37 -6.62 16 22 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 23 H -0.27 -6.58 6.64 56.52 0.38 -6.20 16 24 C 0.16 2.85 4.90 -3.94 -0.02 2.83 16 25 N -0.45 -3.92 2.62 -111.46 -0.29 -4.22 16 26 C -0.05 -0.47 11.54 -16.56 -0.19 -0.66 16 27 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 28 N -0.50 -5.74 11.25 -14.67 -0.17 -5.91 16 29 C 0.18 1.68 11.65 -90.38 -1.05 0.63 16 30 H 0.06 0.46 7.95 -51.93 -0.41 0.04 16 31 H 0.10 1.11 5.95 -51.93 -0.31 0.80 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.72 7.95 -51.93 -0.41 0.31 16 34 H 0.10 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.07 0.49 7.31 -51.93 -0.38 0.11 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.66 7.70 -51.93 -0.40 0.26 16 38 H 0.08 0.75 7.70 -51.93 -0.40 0.35 16 39 H 0.08 1.33 7.73 -51.93 -0.40 0.93 16 40 H 0.09 1.61 5.63 -51.93 -0.29 1.32 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 1.25 6.20 -51.93 -0.32 0.93 16 45 H 0.07 1.67 4.46 -51.93 -0.23 1.44 16 46 H 0.02 0.49 7.11 -51.93 -0.37 0.12 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.03 0.46 8.14 -51.92 -0.42 0.04 16 49 H 0.06 1.13 7.76 -51.93 -0.40 0.72 16 50 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 51 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 52 H 0.20 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 394.44 15.07 5.94 5.94 Total: -1.00 -33.02 394.44 -9.75 -42.77 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.58 Total: 0.87 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.36 Total: -0.57 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.69 Total: -58.49 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.08 Total: -8.33 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.14 Total: 17.81 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.02 -9.75 -42.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040425914.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.816 kcal (2) G-P(sol) polarization free energy of solvation -33.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds