Wall clock time and date at job start Wed Apr 1 2020 04:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47573 * 2 1 4 4 C 1.53002 * 109.47105 * 120.00359 * 2 1 3 5 5 C 1.50699 * 109.46777 * 294.99585 * 4 2 1 6 6 O 1.21273 * 120.00451 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99396 * 180.02562 * 5 4 2 8 8 C 1.48189 * 127.80720 * 0.02645 * 7 5 4 9 9 C 1.54502 * 104.63361 * 140.72246 * 8 7 5 10 10 C 1.53832 * 104.79264 * 23.79634 * 9 8 7 11 11 C 1.48262 * 127.79950 * 180.02562 * 7 5 4 12 12 C 1.52488 * 110.21913 * 240.96725 * 10 9 8 13 13 C 1.53126 * 109.64796 * 178.05981 * 12 10 9 14 14 C 1.52750 * 109.36239 * 60.37168 * 13 12 10 15 15 N 1.46927 * 109.08968 * 305.08899 * 14 13 12 16 16 C 1.36944 * 120.67720 * 234.05065 * 15 14 13 17 17 H 1.07998 * 120.00079 * 152.46694 * 16 15 14 18 18 C 1.38816 * 119.99680 * 332.74832 * 16 15 14 19 19 N 1.31612 * 120.00082 * 159.11423 * 18 16 15 20 20 Si 1.86798 * 119.99796 * 339.11231 * 18 16 15 21 21 H 1.48499 * 109.47300 * 93.32079 * 20 18 16 22 22 H 1.48507 * 109.46976 * 213.31591 * 20 18 16 23 23 H 1.48503 * 109.47459 * 333.31464 * 20 18 16 24 24 C 1.47025 * 118.65144 * 53.77011 * 15 14 13 25 25 N 1.46507 * 109.46698 * 239.99839 * 2 1 3 26 26 C 1.36886 * 126.39193 * 119.71584 * 25 2 1 27 27 C 1.34668 * 106.81521 * 179.84138 * 26 25 2 28 28 N 1.34134 * 108.02094 * 0.42335 * 27 26 25 29 29 C 1.30503 * 109.25216 * 359.72838 * 28 27 26 30 30 H 1.09002 * 109.47012 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46888 * 299.99417 * 1 2 3 32 32 H 1.08999 * 109.47319 * 59.99936 * 1 2 3 33 33 H 1.09002 * 109.46986 * 174.99542 * 4 2 1 34 34 H 1.08998 * 109.46927 * 54.99787 * 4 2 1 35 35 H 1.08995 * 110.40276 * 21.93083 * 8 7 5 36 36 H 1.09005 * 110.39822 * 259.51196 * 8 7 5 37 37 H 1.09000 * 110.37277 * 264.96602 * 9 8 7 38 38 H 1.09000 * 110.46726 * 142.67211 * 9 8 7 39 39 H 1.09004 * 110.42272 * 100.37108 * 11 7 5 40 40 H 1.09007 * 110.42360 * 337.89740 * 11 7 5 41 41 H 1.08997 * 109.44356 * 298.11945 * 12 10 9 42 42 H 1.08996 * 109.43448 * 58.01302 * 12 10 9 43 43 H 1.09002 * 109.49584 * 180.43975 * 13 12 10 44 44 H 1.08995 * 109.50362 * 300.54714 * 13 12 10 45 45 H 1.09000 * 109.49606 * 185.18022 * 14 13 12 46 46 H 1.09006 * 109.42360 * 64.94894 * 14 13 12 47 47 H 0.97002 * 119.99982 * 179.97438 * 19 18 16 48 48 H 1.09008 * 109.56747 * 67.32753 * 24 15 14 49 49 H 1.08995 * 109.57569 * 187.70918 * 24 15 14 50 50 H 1.07996 * 126.59464 * 359.97438 * 26 25 2 51 51 H 1.07995 * 125.99097 * 180.11878 * 27 26 25 52 52 H 1.08001 * 125.64640 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 8 1.0111 1.0868 2.3633 7 7 1.9854 -0.3916 3.7000 8 6 2.7479 -1.6167 4.0371 9 6 3.6690 -1.1946 5.2036 10 6 2.9656 0.0158 5.8413 11 6 1.6865 0.2294 5.0127 12 6 3.8588 1.2488 5.7574 13 6 3.1275 2.4557 6.3517 14 6 2.7962 2.1762 7.8164 15 7 2.0395 0.9200 7.9067 16 6 0.8284 0.8782 8.5445 17 1 0.0900 0.1455 8.2539 18 6 0.5475 1.7813 9.5606 19 7 -0.7013 2.0314 9.8921 20 14 1.9422 2.6415 10.4574 21 1 2.2180 3.9476 9.8068 22 1 1.5562 2.8658 11.8737 23 1 3.1613 1.7950 10.4048 24 6 2.6060 -0.2899 7.2928 25 7 2.0183 -0.6907 -1.1962 26 6 2.8039 -0.1538 -2.1802 27 6 3.0188 -1.1296 -3.0831 28 7 2.3741 -2.2296 -2.6665 29 6 1.7726 -1.9740 -1.5369 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 3.1264 -0.7996 1.2055 34 1 1.6054 -1.7199 1.2951 35 1 3.3414 -1.9420 3.1828 36 1 2.0712 -2.4099 4.3551 37 1 4.6509 -0.9080 4.8271 38 1 3.7624 -2.0041 5.9276 39 1 0.8398 -0.2686 5.4851 40 1 1.4844 1.2938 4.8928 41 1 4.7775 1.0700 6.3160 42 1 4.1023 1.4499 4.7142 43 1 3.7650 3.3372 6.2834 44 1 2.2042 2.6301 5.7993 45 1 2.1959 2.9936 8.2160 46 1 3.7209 2.0872 8.3867 47 1 -0.8975 2.6622 10.6024 48 1 3.5025 -0.5893 7.8359 49 1 1.8713 -1.0943 7.3255 50 1 3.1809 0.8573 -2.2232 51 1 3.6033 -1.0406 -3.9868 52 1 1.1766 -2.6731 -0.9690 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040425914.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:53 Heat of formation + Delta-G solvation = 39.469721 kcal Electronic energy + Delta-G solvation = -31537.237290 eV Core-core repulsion = 27537.820708 eV Total energy + Delta-G solvation = -3999.416582 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.02157 -41.55339 -40.04357 -37.62883 -36.53930 -34.83330 -33.07607 -32.67175 -31.92148 -30.25141 -30.14083 -29.41474 -27.27046 -26.84191 -24.81758 -24.13334 -23.69843 -22.37694 -22.25893 -21.36768 -20.04298 -19.63995 -18.76802 -18.60394 -17.47372 -17.27351 -17.11402 -16.67185 -16.18051 -15.93751 -15.78953 -15.41414 -15.22805 -15.09561 -14.81219 -14.72543 -14.62560 -14.34563 -14.27901 -14.11737 -13.94258 -13.64924 -13.47749 -13.35829 -13.02892 -12.94801 -12.74604 -12.56134 -12.50034 -12.31597 -12.28439 -12.10567 -11.85030 -11.64890 -11.53002 -11.21387 -11.10184 -10.95143 -10.88402 -10.64949 -10.58715 -9.72806 -9.42255 -8.90292 -8.15830 -5.46372 1.16056 1.29914 1.40091 1.49342 1.54538 1.60934 2.14178 2.26239 2.42239 3.04214 3.30736 3.38737 3.47324 3.67346 3.74538 3.78679 3.82217 3.89497 4.03204 4.09541 4.19247 4.20513 4.32368 4.40376 4.44324 4.45998 4.51980 4.55208 4.60956 4.67882 4.72997 4.75888 4.78766 4.79199 4.86833 4.89307 4.99147 5.03628 5.03914 5.08645 5.15221 5.19382 5.24388 5.28986 5.40062 5.49945 5.54409 5.85254 5.87327 6.13574 6.28571 6.59078 6.92761 7.08936 7.17410 7.64040 8.04580 9.04063 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023280 B = 0.002361 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.445218 B =11855.541998 C =12129.951688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.156 3.844 3 H 0.102 0.898 4 C -0.132 4.132 5 C 0.532 3.468 6 O -0.583 6.583 7 N -0.620 5.620 8 C 0.098 3.902 9 C -0.117 4.117 10 C -0.081 4.081 11 C 0.130 3.870 12 C -0.085 4.085 13 C -0.135 4.135 14 C 0.121 3.879 15 N -0.618 5.618 16 C -0.238 4.238 17 H 0.052 0.948 18 C -0.039 4.039 19 N -0.959 5.959 20 Si 0.947 3.053 21 H -0.282 1.282 22 H -0.314 1.314 23 H -0.255 1.255 24 C 0.160 3.840 25 N -0.450 5.450 26 C -0.055 4.055 27 C -0.054 4.054 28 N -0.535 5.535 29 C 0.179 3.821 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.043 0.957 45 H 0.040 0.960 46 H 0.037 0.963 47 H 0.259 0.741 48 H 0.046 0.954 49 H 0.058 0.942 50 H 0.194 0.806 51 H 0.180 0.820 52 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.172 -8.719 -20.756 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.052 3.948 3 H 0.120 0.880 4 C -0.172 4.172 5 C 0.322 3.678 6 O -0.463 6.463 7 N -0.352 5.352 8 C -0.023 4.023 9 C -0.156 4.156 10 C -0.083 4.083 11 C 0.008 3.992 12 C -0.123 4.123 13 C -0.173 4.173 14 C -0.004 4.004 15 N -0.343 5.343 16 C -0.368 4.368 17 H 0.070 0.930 18 C -0.234 4.234 19 N -0.606 5.606 20 Si 0.777 3.223 21 H -0.209 1.209 22 H -0.244 1.244 23 H -0.180 1.180 24 C 0.035 3.965 25 N -0.133 5.133 26 C -0.188 4.188 27 C -0.201 4.201 28 N -0.253 5.253 29 C -0.103 4.103 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.137 0.863 34 H 0.144 0.856 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.068 0.932 48 H 0.064 0.936 49 H 0.077 0.923 50 H 0.211 0.789 51 H 0.198 0.802 52 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 12.662 -8.775 -21.115 26.138 hybrid contribution -0.363 1.782 1.504 2.359 sum 12.300 -6.993 -19.611 24.182 Atomic orbital electron populations 1.22220 0.92752 1.03604 1.03495 1.21039 0.95858 0.96631 0.81224 0.87992 1.21902 1.04878 1.00955 0.89459 1.20437 0.78573 0.84999 0.83803 1.90715 1.42392 1.26826 1.86409 1.49190 1.54940 1.26341 1.04768 1.22723 0.94341 0.86031 0.99212 1.22571 0.98918 0.96749 0.97315 1.21497 0.94432 0.96954 0.95458 1.22098 0.97112 0.97962 0.82076 1.21321 0.97666 0.92859 1.00440 1.21947 0.99994 0.99178 0.96228 1.21274 0.94617 0.88311 0.96177 1.44477 1.20514 1.04997 1.64270 1.18808 0.90404 1.16391 1.11221 0.93046 1.25896 0.97783 1.00492 0.99202 1.69979 1.19420 1.38068 1.33133 0.85900 0.81107 0.78679 0.76636 1.20943 1.24373 1.17951 1.21141 0.96999 0.87872 0.90487 1.45789 1.37936 1.11289 1.18292 1.23171 1.01851 1.02003 0.91738 1.22644 1.05334 0.89648 1.02434 1.70295 1.13734 1.29485 1.11832 1.25367 1.03460 0.85948 0.95541 0.90672 0.90638 0.92075 0.86267 0.85613 0.87066 0.89792 0.88931 0.88359 0.93312 0.92942 0.90410 0.91645 0.90637 0.93878 0.94149 0.94551 0.93174 0.93644 0.92339 0.78928 0.80238 0.75898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 8.98 71.98 0.65 -2.03 16 2 C 0.16 2.26 2.70 44.99 0.12 2.38 16 3 H 0.10 1.68 7.90 -2.39 -0.02 1.66 16 4 C -0.13 -1.66 4.16 29.85 0.12 -1.53 16 5 C 0.53 11.93 7.63 87.66 0.67 12.60 16 6 O -0.58 -18.41 14.24 -3.01 -0.04 -18.45 16 7 N -0.62 -13.74 3.32 -808.29 -2.68 -16.42 16 8 C 0.10 1.33 6.92 86.57 0.60 1.93 16 9 C -0.12 -1.81 6.29 31.39 0.20 -1.61 16 10 C -0.08 -2.09 0.68 -51.89 -0.04 -2.12 16 11 C 0.13 4.00 5.78 86.34 0.50 4.50 16 12 C -0.09 -2.19 4.48 30.47 0.14 -2.05 16 13 C -0.13 -4.45 5.86 30.55 0.18 -4.27 16 14 C 0.12 4.96 4.17 86.21 0.36 5.32 16 15 N -0.62 -27.41 2.61 -700.74 -1.83 -29.23 16 16 C -0.24 -13.16 10.04 84.03 0.84 -12.31 16 17 H 0.05 3.11 8.05 -2.91 -0.02 3.08 16 18 C -0.04 -2.29 5.23 84.86 0.44 -1.85 16 19 N -0.96 -60.63 13.97 21.65 0.30 -60.33 16 20 Si 0.95 46.47 24.36 68.60 1.67 48.14 16 21 H -0.28 -13.34 6.63 99.48 0.66 -12.68 16 22 H -0.31 -15.81 7.11 99.48 0.71 -15.11 16 23 H -0.26 -11.70 6.64 99.48 0.66 -11.04 16 24 C 0.16 5.33 4.90 86.16 0.42 5.75 16 25 N -0.45 -6.60 2.62 -506.53 -1.33 -7.92 16 26 C -0.05 -0.81 11.54 83.09 0.96 0.15 16 27 C -0.05 -0.95 11.87 83.52 0.99 0.04 16 28 N -0.53 -11.33 11.25 -200.31 -2.25 -13.59 16 29 C 0.18 2.84 11.65 180.26 2.10 4.94 16 30 H 0.07 0.98 7.95 -2.39 -0.02 0.96 16 31 H 0.07 1.68 5.95 -2.39 -0.01 1.67 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.12 1.12 7.95 -2.39 -0.02 1.10 16 34 H 0.13 1.01 8.08 -2.39 -0.02 0.99 16 35 H 0.11 0.76 7.31 -2.39 -0.02 0.74 16 36 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.09 1.12 7.70 -2.39 -0.02 1.11 16 38 H 0.10 1.29 7.70 -2.39 -0.02 1.27 16 39 H 0.05 1.75 7.73 -2.38 -0.02 1.73 16 40 H 0.05 1.99 5.63 -2.38 -0.01 1.98 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.04 1.63 6.20 -2.39 -0.01 1.62 16 45 H 0.04 1.90 4.46 -2.39 -0.01 1.89 16 46 H 0.04 1.41 7.11 -2.38 -0.02 1.39 16 47 H 0.26 15.67 8.31 -92.71 -0.77 14.89 16 48 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 49 H 0.06 2.00 7.76 -2.39 -0.02 1.98 16 50 H 0.19 1.86 8.06 -2.91 -0.02 1.83 16 51 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 52 H 0.22 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -77.57 394.44 3.90 -73.67 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.81 Total: 14.32 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 9.26 Total: 9.82 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -7.79 Total: -127.49 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.04 Total: -18.45 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.67 Total: 48.14 kcal Total: -77.57 3.90 -73.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040425914.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.135 kcal (2) G-P(sol) polarization free energy of solvation -77.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds