Wall clock time and date at job start Wed Apr 1 2020 04:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47422 * 2 1 4 4 C 1.53009 * 109.47184 * 119.99990 * 2 1 3 5 5 C 1.50699 * 109.46985 * 294.99884 * 4 2 1 6 6 O 1.21286 * 119.99991 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99848 * 179.97438 * 5 4 2 8 8 C 1.48210 * 127.05149 * 359.96510 * 7 5 4 9 9 C 1.55038 * 103.33327 * 219.00558 * 8 7 5 10 10 C 1.54178 * 102.72473 * 323.00890 * 9 8 7 11 11 C 1.47610 * 127.02237 * 179.97438 * 7 5 4 12 12 C 1.52501 * 110.00806 * 140.67896 * 10 9 8 13 13 C 1.53131 * 109.59875 * 61.56937 * 12 10 9 14 14 C 1.53193 * 109.29259 * 60.51054 * 13 12 10 15 15 N 1.46920 * 108.89106 * 304.93686 * 14 13 12 16 16 C 1.36942 * 120.67471 * 234.03046 * 15 14 13 17 17 H 1.08001 * 119.99968 * 27.37591 * 16 15 14 18 18 C 1.38817 * 119.99989 * 207.37277 * 16 15 14 19 19 N 1.31611 * 119.99984 * 17.23178 * 18 16 15 20 20 Si 1.86795 * 119.99858 * 197.23361 * 18 16 15 21 21 H 1.48505 * 109.47151 * 90.00051 * 20 18 16 22 22 H 1.48501 * 109.47286 * 210.00036 * 20 18 16 23 23 H 1.48501 * 109.47218 * 330.00014 * 20 18 16 24 24 C 1.47034 * 118.64579 * 54.01638 * 15 14 13 25 25 N 1.46499 * 109.47309 * 239.99795 * 2 1 3 26 26 C 1.36884 * 126.39619 * 119.71518 * 25 2 1 27 27 C 1.34668 * 106.81756 * 179.84857 * 26 25 2 28 28 N 1.34130 * 108.01820 * 0.41502 * 27 26 25 29 29 C 1.30502 * 109.25785 * 359.73895 * 28 27 26 30 30 H 1.08999 * 109.46902 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46928 * 299.99916 * 1 2 3 32 32 H 1.08991 * 109.46756 * 59.99788 * 1 2 3 33 33 H 1.08997 * 109.47069 * 174.99895 * 4 2 1 34 34 H 1.09001 * 109.46568 * 54.99729 * 4 2 1 35 35 H 1.09009 * 110.62527 * 100.55270 * 8 7 5 36 36 H 1.09002 * 110.80069 * 337.54763 * 8 7 5 37 37 H 1.09002 * 110.75856 * 204.70308 * 9 8 7 38 38 H 1.09003 * 110.75692 * 81.32479 * 9 8 7 39 39 H 1.08991 * 109.97228 * 35.28867 * 11 7 5 40 40 H 1.09006 * 109.97474 * 274.05120 * 11 7 5 41 41 H 1.08997 * 109.44485 * 181.60710 * 12 10 9 42 42 H 1.08994 * 109.45368 * 301.55692 * 12 10 9 43 43 H 1.09004 * 109.49675 * 180.44977 * 13 12 10 44 44 H 1.09000 * 109.50365 * 300.52447 * 13 12 10 45 45 H 1.09005 * 109.56640 * 64.75655 * 14 13 12 46 46 H 1.08998 * 109.56916 * 184.99030 * 14 13 12 47 47 H 0.97002 * 120.00018 * 179.97438 * 19 18 16 48 48 H 1.09004 * 109.58154 * 187.42103 * 24 15 14 49 49 H 1.08998 * 109.58636 * 67.00465 * 24 15 14 50 50 H 1.07998 * 126.59125 * 359.97438 * 26 25 2 51 51 H 1.07996 * 125.99237 * 180.19037 * 27 26 25 52 52 H 1.07995 * 125.64621 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 8 1.0110 1.0870 2.3633 7 7 1.9845 -0.3919 3.7002 8 6 2.7465 -1.6227 4.0186 9 6 2.0375 -2.1641 5.2866 10 6 1.6792 -0.8746 6.0521 11 6 1.6781 0.2418 4.9977 12 6 0.2982 -1.0101 6.6848 13 6 0.3045 -2.1660 7.6891 14 6 1.3323 -1.8767 8.7875 15 7 2.6381 -1.6252 8.1628 16 6 3.7438 -2.3376 8.5442 17 1 3.6325 -3.3354 8.9421 18 6 5.0076 -1.7771 8.4192 19 7 5.1385 -0.4766 8.2651 20 14 6.5225 -2.8687 8.4697 21 1 6.8566 -3.3159 7.0936 22 1 7.6647 -2.1048 9.0329 23 1 6.2508 -4.0535 9.3229 24 6 2.7335 -0.5934 7.1197 25 7 2.0184 -0.6906 -1.1961 26 6 2.8041 -0.1538 -2.1801 27 6 3.0189 -1.1296 -3.0829 28 7 2.3743 -2.2296 -2.6663 29 6 1.7727 -1.9740 -1.5368 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8899 33 1 3.1263 -0.7995 1.2056 34 1 1.6054 -1.7198 1.2952 35 1 3.7884 -1.3846 4.2329 36 1 2.6778 -2.3423 3.2028 37 1 2.7148 -2.7856 5.8724 38 1 1.1373 -2.7177 5.0193 39 1 0.6973 0.7156 4.9581 40 1 2.4400 0.9829 5.2393 41 1 0.0423 -0.0838 7.1992 42 1 -0.4393 -1.2093 5.9074 43 1 -0.6854 -2.2665 8.1344 44 1 0.5688 -3.0914 7.1773 45 1 1.0236 -0.9981 9.3542 46 1 1.4044 -2.7350 9.4554 47 1 6.0216 -0.0849 8.1781 48 1 3.7257 -0.6200 6.6691 49 1 2.5557 0.3880 7.5592 50 1 3.1810 0.8574 -2.2230 51 1 3.6044 -1.0409 -3.9861 52 1 1.1774 -2.6733 -0.9685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040425919.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:06 Heat of formation + Delta-G solvation = 50.148600 kcal Electronic energy + Delta-G solvation = -31567.788287 eV Core-core repulsion = 27568.834776 eV Total energy + Delta-G solvation = -3998.953511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.29538 -40.33554 -38.76616 -36.13081 -35.58238 -33.22724 -31.66976 -31.01824 -30.07005 -29.46079 -29.24991 -28.41374 -25.49540 -25.38966 -23.54864 -22.91719 -22.27448 -21.54419 -20.89409 -20.38110 -19.15248 -18.15505 -17.77563 -16.69634 -16.39366 -16.12856 -15.86511 -15.38129 -14.93751 -14.57199 -14.49967 -14.12690 -14.03928 -13.97967 -13.77167 -13.52887 -13.38318 -13.17029 -13.03184 -12.81908 -12.44964 -12.31179 -12.19648 -11.94134 -11.81328 -11.70857 -11.54690 -11.19258 -11.07517 -11.01918 -10.76422 -10.45695 -10.22789 -10.14995 -10.13755 -9.95591 -9.89596 -9.83690 -9.60498 -9.47411 -8.70594 -8.58897 -8.56679 -6.77051 -5.88536 -3.30293 1.86715 2.40895 2.52748 3.01118 3.08361 3.29863 3.38525 3.39258 4.12271 4.34044 4.40778 4.42611 4.52527 4.68898 4.76807 4.89414 4.99597 5.05932 5.15913 5.16824 5.24618 5.29890 5.40650 5.45141 5.48715 5.53267 5.55393 5.57984 5.62064 5.74014 5.88353 5.93742 5.96172 6.04420 6.11575 6.15367 6.22425 6.24906 6.37296 6.42964 6.55185 6.56065 6.70190 6.77106 6.85024 6.93056 6.98362 7.21700 7.50752 7.58484 7.71012 7.89846 8.07491 8.34388 9.11461 9.74879 10.32051 11.19867 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013462 B = 0.002711 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.380497 B =10324.750259 C =11474.482159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 H 0.109 0.891 4 C -0.148 4.148 5 C 0.535 3.465 6 O -0.548 6.548 7 N -0.611 5.611 8 C 0.095 3.905 9 C -0.112 4.112 10 C -0.093 4.093 11 C 0.118 3.882 12 C -0.094 4.094 13 C -0.134 4.134 14 C 0.144 3.856 15 N -0.589 5.589 16 C -0.252 4.252 17 H 0.066 0.934 18 C 0.004 3.996 19 N -0.902 5.902 20 Si 0.899 3.101 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.187 3.813 25 N -0.453 5.453 26 C -0.054 4.054 27 C -0.034 4.034 28 N -0.497 5.497 29 C 0.182 3.818 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.017 0.983 46 H 0.052 0.948 47 H 0.254 0.746 48 H 0.090 0.910 49 H 0.019 0.981 50 H 0.172 0.828 51 H 0.168 0.832 52 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.017 -0.197 -14.623 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 H 0.127 0.873 4 C -0.189 4.189 5 C 0.323 3.677 6 O -0.428 6.428 7 N -0.344 5.344 8 C -0.027 4.027 9 C -0.151 4.151 10 C -0.096 4.096 11 C -0.005 4.005 12 C -0.131 4.131 13 C -0.173 4.173 14 C 0.017 3.983 15 N -0.311 5.311 16 C -0.381 4.381 17 H 0.084 0.916 18 C -0.195 4.195 19 N -0.546 5.546 20 Si 0.729 3.271 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.061 3.939 25 N -0.136 5.136 26 C -0.188 4.188 27 C -0.182 4.182 28 N -0.216 5.216 29 C -0.101 4.101 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.035 0.965 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.109 0.891 49 H 0.037 0.963 50 H 0.190 0.810 51 H 0.185 0.815 52 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.263 -0.209 -15.030 17.153 hybrid contribution 0.995 0.284 0.510 1.154 sum -7.268 0.076 -14.520 16.238 Atomic orbital electron populations 1.22296 0.92319 1.03030 1.04723 1.21166 0.96265 0.96884 0.81066 0.87265 1.21967 1.03923 1.00817 0.92173 1.19710 0.79519 0.85341 0.83117 1.90679 1.41246 1.24862 1.85985 1.48910 1.54172 1.25883 1.05419 1.22763 0.96442 0.85353 0.98171 1.22676 1.00333 0.97562 0.94483 1.21860 0.98345 0.93455 0.95933 1.22144 1.01278 0.96041 0.81013 1.21376 0.95129 0.98889 0.97753 1.22033 0.98816 0.98176 0.98260 1.20913 0.86432 0.98055 0.92878 1.44028 1.03900 1.43214 1.39956 1.19180 0.84397 0.95579 1.38956 0.91585 1.25016 0.97972 0.95176 1.01339 1.70021 1.22327 1.08769 1.53469 0.86339 0.82968 0.79949 0.77832 1.21415 1.21792 1.20431 1.20756 0.96257 0.90344 0.86560 1.45800 1.38043 1.11408 1.18343 1.22787 1.02446 1.01296 0.92233 1.22294 1.04783 0.89584 1.01505 1.70306 1.12397 1.28249 1.10604 1.24873 1.03868 0.85486 0.95851 0.92176 0.88230 0.91906 0.88105 0.88104 0.90275 0.90912 0.88106 0.92125 0.91066 0.91138 0.92577 0.93588 0.93218 0.92213 0.96548 0.92903 0.93589 0.89144 0.96258 0.81028 0.81500 0.78316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 8.98 37.16 0.33 -1.13 16 2 C 0.15 1.35 2.70 -67.93 -0.18 1.16 16 3 H 0.11 1.04 7.90 -51.93 -0.41 0.63 16 4 C -0.15 -1.38 4.11 -27.88 -0.11 -1.50 16 5 C 0.54 6.89 7.61 -10.99 -0.08 6.81 16 6 O -0.55 -8.47 14.31 5.55 0.08 -8.39 16 7 N -0.61 -8.39 3.30 -169.79 -0.56 -8.95 16 8 C 0.10 1.23 6.95 -2.02 -0.01 1.22 16 9 C -0.11 -1.68 5.00 -25.04 -0.13 -1.80 16 10 C -0.09 -1.53 0.63 -154.03 -0.10 -1.62 16 11 C 0.12 1.83 6.28 -3.14 -0.02 1.81 16 12 C -0.09 -1.43 4.34 -26.92 -0.12 -1.55 16 13 C -0.13 -2.10 5.88 -26.56 -0.16 -2.25 16 14 C 0.14 2.77 6.50 -3.71 -0.02 2.75 16 15 N -0.59 -13.30 2.50 -172.56 -0.43 -13.73 16 16 C -0.25 -6.32 9.59 -15.05 -0.14 -6.47 16 17 H 0.07 1.65 7.89 -52.49 -0.41 1.24 16 18 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 19 N -0.90 -24.50 11.18 55.49 0.62 -23.88 16 20 Si 0.90 20.41 29.59 -169.99 -5.03 15.38 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 C 0.19 3.96 3.65 -3.93 -0.01 3.94 16 25 N -0.45 -4.29 2.62 -111.46 -0.29 -4.58 16 26 C -0.05 -0.51 11.54 -16.56 -0.19 -0.70 16 27 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 28 N -0.50 -6.17 11.25 -14.67 -0.17 -6.34 16 29 C 0.18 1.85 11.65 -90.38 -1.05 0.80 16 30 H 0.06 0.47 7.94 -51.93 -0.41 0.05 16 31 H 0.10 1.07 5.95 -51.93 -0.31 0.76 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 0.79 7.85 -51.93 -0.41 0.38 16 35 H 0.08 1.13 8.14 -51.92 -0.42 0.70 16 36 H 0.07 0.74 7.25 -51.93 -0.38 0.37 16 37 H 0.10 1.77 7.48 -51.93 -0.39 1.39 16 38 H 0.06 0.83 7.62 -51.93 -0.40 0.43 16 39 H 0.07 1.10 7.60 -51.93 -0.39 0.71 16 40 H 0.07 1.18 7.68 -51.93 -0.40 0.78 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.95 7.13 -51.93 -0.37 0.58 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.05 1.01 7.94 -51.93 -0.41 0.60 16 47 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 48 H 0.09 2.15 6.06 -51.93 -0.31 1.84 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 51 H 0.17 1.38 8.06 -52.49 -0.42 0.95 16 52 H 0.20 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 402.15 15.07 6.06 6.06 Total: -1.00 -29.95 402.15 -10.81 -40.75 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -8.79 Total: 2.77 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -2.30 Total: 0.90 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.83 Total: -57.48 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.08 Total: -8.39 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.95 -10.81 -40.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040425919.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.903 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds