Wall clock time and date at job start Wed Apr 1 2020 04:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47422 * 2 1 4 4 C 1.53009 * 109.47184 * 119.99990 * 2 1 3 5 5 C 1.50699 * 109.46985 * 294.99884 * 4 2 1 6 6 O 1.21286 * 119.99991 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99848 * 179.97438 * 5 4 2 8 8 C 1.48210 * 127.05149 * 359.96510 * 7 5 4 9 9 C 1.55038 * 103.33327 * 219.00558 * 8 7 5 10 10 C 1.54178 * 102.72473 * 323.00890 * 9 8 7 11 11 C 1.47610 * 127.02237 * 179.97438 * 7 5 4 12 12 C 1.52501 * 110.00806 * 140.67896 * 10 9 8 13 13 C 1.53131 * 109.59875 * 61.56937 * 12 10 9 14 14 C 1.53193 * 109.29259 * 60.51054 * 13 12 10 15 15 N 1.46920 * 108.89106 * 304.93686 * 14 13 12 16 16 C 1.36942 * 120.67471 * 234.03046 * 15 14 13 17 17 H 1.08001 * 119.99968 * 27.37591 * 16 15 14 18 18 C 1.38817 * 119.99989 * 207.37277 * 16 15 14 19 19 N 1.31611 * 119.99984 * 17.23178 * 18 16 15 20 20 Si 1.86795 * 119.99858 * 197.23361 * 18 16 15 21 21 H 1.48505 * 109.47151 * 90.00051 * 20 18 16 22 22 H 1.48501 * 109.47286 * 210.00036 * 20 18 16 23 23 H 1.48501 * 109.47218 * 330.00014 * 20 18 16 24 24 C 1.47034 * 118.64579 * 54.01638 * 15 14 13 25 25 N 1.46499 * 109.47309 * 239.99795 * 2 1 3 26 26 C 1.36884 * 126.39619 * 119.71518 * 25 2 1 27 27 C 1.34668 * 106.81756 * 179.84857 * 26 25 2 28 28 N 1.34130 * 108.01820 * 0.41502 * 27 26 25 29 29 C 1.30502 * 109.25785 * 359.73895 * 28 27 26 30 30 H 1.08999 * 109.46902 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46928 * 299.99916 * 1 2 3 32 32 H 1.08991 * 109.46756 * 59.99788 * 1 2 3 33 33 H 1.08997 * 109.47069 * 174.99895 * 4 2 1 34 34 H 1.09001 * 109.46568 * 54.99729 * 4 2 1 35 35 H 1.09009 * 110.62527 * 100.55270 * 8 7 5 36 36 H 1.09002 * 110.80069 * 337.54763 * 8 7 5 37 37 H 1.09002 * 110.75856 * 204.70308 * 9 8 7 38 38 H 1.09003 * 110.75692 * 81.32479 * 9 8 7 39 39 H 1.08991 * 109.97228 * 35.28867 * 11 7 5 40 40 H 1.09006 * 109.97474 * 274.05120 * 11 7 5 41 41 H 1.08997 * 109.44485 * 181.60710 * 12 10 9 42 42 H 1.08994 * 109.45368 * 301.55692 * 12 10 9 43 43 H 1.09004 * 109.49675 * 180.44977 * 13 12 10 44 44 H 1.09000 * 109.50365 * 300.52447 * 13 12 10 45 45 H 1.09005 * 109.56640 * 64.75655 * 14 13 12 46 46 H 1.08998 * 109.56916 * 184.99030 * 14 13 12 47 47 H 0.97002 * 120.00018 * 179.97438 * 19 18 16 48 48 H 1.09004 * 109.58154 * 187.42103 * 24 15 14 49 49 H 1.08998 * 109.58636 * 67.00465 * 24 15 14 50 50 H 1.07998 * 126.59125 * 359.97438 * 26 25 2 51 51 H 1.07996 * 125.99237 * 180.19037 * 27 26 25 52 52 H 1.07995 * 125.64621 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 8 1.0110 1.0870 2.3633 7 7 1.9845 -0.3919 3.7002 8 6 2.7465 -1.6227 4.0186 9 6 2.0375 -2.1641 5.2866 10 6 1.6792 -0.8746 6.0521 11 6 1.6781 0.2418 4.9977 12 6 0.2982 -1.0101 6.6848 13 6 0.3045 -2.1660 7.6891 14 6 1.3323 -1.8767 8.7875 15 7 2.6381 -1.6252 8.1628 16 6 3.7438 -2.3376 8.5442 17 1 3.6325 -3.3354 8.9421 18 6 5.0076 -1.7771 8.4192 19 7 5.1385 -0.4766 8.2651 20 14 6.5225 -2.8687 8.4697 21 1 6.8566 -3.3159 7.0936 22 1 7.6647 -2.1048 9.0329 23 1 6.2508 -4.0535 9.3229 24 6 2.7335 -0.5934 7.1197 25 7 2.0184 -0.6906 -1.1961 26 6 2.8041 -0.1538 -2.1801 27 6 3.0189 -1.1296 -3.0829 28 7 2.3743 -2.2296 -2.6663 29 6 1.7727 -1.9740 -1.5368 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8899 33 1 3.1263 -0.7995 1.2056 34 1 1.6054 -1.7198 1.2952 35 1 3.7884 -1.3846 4.2329 36 1 2.6778 -2.3423 3.2028 37 1 2.7148 -2.7856 5.8724 38 1 1.1373 -2.7177 5.0193 39 1 0.6973 0.7156 4.9581 40 1 2.4400 0.9829 5.2393 41 1 0.0423 -0.0838 7.1992 42 1 -0.4393 -1.2093 5.9074 43 1 -0.6854 -2.2665 8.1344 44 1 0.5688 -3.0914 7.1773 45 1 1.0236 -0.9981 9.3542 46 1 1.4044 -2.7350 9.4554 47 1 6.0216 -0.0849 8.1781 48 1 3.7257 -0.6200 6.6691 49 1 2.5557 0.3880 7.5592 50 1 3.1810 0.8574 -2.2230 51 1 3.6044 -1.0409 -3.9861 52 1 1.1774 -2.6733 -0.9685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040425919.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:04 Heat of formation + Delta-G solvation = 35.810762 kcal Electronic energy + Delta-G solvation = -31568.410023 eV Core-core repulsion = 27568.834776 eV Total energy + Delta-G solvation = -3999.575247 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.02477 -41.49814 -39.99018 -37.40439 -36.51443 -34.89104 -32.98424 -31.93765 -31.68625 -30.48207 -30.16267 -29.27671 -27.27479 -26.64921 -24.48150 -24.00978 -23.83618 -22.31893 -22.17306 -21.27937 -20.20578 -19.54899 -18.71585 -18.33091 -17.44370 -17.18447 -16.83677 -16.63320 -16.15348 -15.75462 -15.61857 -15.50617 -15.24356 -14.96828 -14.71625 -14.63511 -14.52846 -14.26454 -14.17472 -13.90487 -13.86641 -13.56980 -13.32306 -13.10173 -12.89203 -12.81765 -12.69887 -12.55424 -12.47722 -12.36309 -12.26181 -12.11877 -11.81661 -11.64034 -11.32377 -11.19519 -11.01394 -10.94668 -10.88809 -10.59421 -10.49718 -9.73966 -9.42831 -8.64152 -7.84196 -5.27968 1.15360 1.48226 1.50849 1.52030 1.58295 1.60495 2.11979 2.25673 2.53520 3.28718 3.37264 3.40894 3.64934 3.70382 3.75256 3.87795 3.89236 3.98049 4.03787 4.10434 4.28482 4.32148 4.38965 4.40542 4.47216 4.50964 4.60355 4.62363 4.64478 4.72829 4.76901 4.79710 4.81877 4.87387 4.94420 4.95882 5.04859 5.15092 5.20146 5.20982 5.30743 5.36809 5.39825 5.43700 5.52294 5.64197 5.70090 5.78100 5.84626 6.28566 6.41805 6.52847 7.03873 7.16845 7.18378 7.89949 8.42172 9.21760 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013462 B = 0.002711 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.380497 B =10324.750259 C =11474.482159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.156 3.844 3 H 0.103 0.897 4 C -0.138 4.138 5 C 0.536 3.464 6 O -0.575 6.575 7 N -0.612 5.612 8 C 0.101 3.899 9 C -0.106 4.106 10 C -0.085 4.085 11 C 0.124 3.876 12 C -0.091 4.091 13 C -0.121 4.121 14 C 0.137 3.863 15 N -0.604 5.604 16 C -0.251 4.251 17 H 0.067 0.933 18 C -0.046 4.046 19 N -0.935 5.935 20 Si 0.958 3.042 21 H -0.281 1.281 22 H -0.302 1.302 23 H -0.271 1.271 24 C 0.200 3.800 25 N -0.452 5.452 26 C -0.055 4.055 27 C -0.054 4.054 28 N -0.536 5.536 29 C 0.179 3.821 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.060 0.940 36 H 0.112 0.888 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.006 0.994 46 H 0.052 0.948 47 H 0.247 0.753 48 H 0.059 0.941 49 H -0.016 1.016 50 H 0.194 0.806 51 H 0.180 0.820 52 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.424 -1.986 -16.200 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.053 3.947 3 H 0.121 0.879 4 C -0.178 4.178 5 C 0.326 3.674 6 O -0.456 6.456 7 N -0.345 5.345 8 C -0.021 4.021 9 C -0.144 4.144 10 C -0.087 4.087 11 C 0.000 4.000 12 C -0.128 4.128 13 C -0.160 4.160 14 C 0.011 3.989 15 N -0.327 5.327 16 C -0.381 4.381 17 H 0.085 0.915 18 C -0.242 4.242 19 N -0.581 5.581 20 Si 0.787 3.213 21 H -0.208 1.208 22 H -0.230 1.230 23 H -0.196 1.196 24 C 0.074 3.926 25 N -0.134 5.134 26 C -0.189 4.189 27 C -0.201 4.201 28 N -0.255 5.255 29 C -0.103 4.103 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.145 0.855 35 H 0.079 0.921 36 H 0.130 0.870 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.024 0.976 46 H 0.071 0.929 47 H 0.056 0.944 48 H 0.077 0.923 49 H 0.002 0.998 50 H 0.211 0.789 51 H 0.197 0.803 52 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -9.693 -2.018 -16.620 19.346 hybrid contribution 1.396 0.897 1.058 1.969 sum -8.297 -1.121 -15.561 17.671 Atomic orbital electron populations 1.22212 0.92035 1.03741 1.03787 1.21071 0.96359 0.96482 0.80819 0.87911 1.21937 1.04453 1.01326 0.90079 1.20309 0.78562 0.85082 0.83487 1.90680 1.42374 1.26181 1.86322 1.48928 1.54442 1.26008 1.05088 1.22728 0.95027 0.85631 0.98700 1.22567 1.00865 0.96317 0.94628 1.21608 0.97483 0.94830 0.94808 1.21891 1.00599 0.95378 0.82125 1.21369 0.94642 0.98566 0.98259 1.21896 0.98767 0.98310 0.96977 1.21085 0.85986 0.97537 0.94243 1.44271 1.04577 1.43041 1.40771 1.19450 0.85353 0.95680 1.37655 0.91526 1.25662 1.00390 0.96072 1.02042 1.70183 1.22188 1.10313 1.55420 0.85404 0.79551 0.78429 0.77917 1.20801 1.22952 1.19562 1.20462 0.96382 0.88463 0.87289 1.45809 1.37960 1.11329 1.18314 1.23177 1.01866 1.02059 0.91751 1.22641 1.05325 0.89653 1.02503 1.70285 1.13758 1.29437 1.11985 1.25379 1.03470 0.85953 0.95497 0.90653 0.90008 0.91913 0.87394 0.85503 0.92148 0.86957 0.90841 0.89646 0.90781 0.93543 0.93215 0.90925 0.90359 0.91701 0.97574 0.92948 0.94355 0.92294 0.99824 0.78893 0.80269 0.75809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 8.98 71.98 0.65 -1.78 16 2 C 0.16 2.40 2.70 45.00 0.12 2.52 16 3 H 0.10 1.75 7.90 -2.39 -0.02 1.74 16 4 C -0.14 -2.11 4.11 29.85 0.12 -1.99 16 5 C 0.54 12.63 7.61 87.66 0.67 13.30 16 6 O -0.57 -16.98 14.31 -3.05 -0.04 -17.03 16 7 N -0.61 -15.76 3.30 -809.48 -2.67 -18.43 16 8 C 0.10 2.41 6.95 86.75 0.60 3.02 16 9 C -0.11 -2.95 5.00 31.69 0.16 -2.79 16 10 C -0.08 -2.73 0.63 -51.87 -0.03 -2.77 16 11 C 0.12 3.81 6.28 86.36 0.54 4.35 16 12 C -0.09 -2.59 4.34 30.47 0.13 -2.46 16 13 C -0.12 -3.49 5.88 30.70 0.18 -3.31 16 14 C 0.14 5.23 6.50 86.36 0.56 5.79 16 15 N -0.60 -27.79 2.50 -699.86 -1.75 -29.55 16 16 C -0.25 -12.81 9.59 84.03 0.81 -12.00 16 17 H 0.07 3.33 7.89 -2.91 -0.02 3.31 16 18 C -0.05 -2.44 4.92 84.86 0.42 -2.02 16 19 N -0.93 -52.93 11.18 21.65 0.24 -52.69 16 20 Si 0.96 42.63 29.59 68.60 2.03 44.66 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 C 0.20 8.81 3.65 86.16 0.31 9.12 16 25 N -0.45 -7.36 2.62 -506.54 -1.33 -8.69 16 26 C -0.06 -0.93 11.54 83.09 0.96 0.03 16 27 C -0.05 -1.07 11.87 83.52 0.99 -0.08 16 28 N -0.54 -12.39 11.25 -200.32 -2.25 -14.64 16 29 C 0.18 3.16 11.65 180.26 2.10 5.26 16 30 H 0.07 0.90 7.94 -2.39 -0.02 0.88 16 31 H 0.08 1.60 5.95 -2.38 -0.01 1.58 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.13 1.35 7.85 -2.39 -0.02 1.33 16 35 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.11 1.81 7.25 -2.39 -0.02 1.80 16 37 H 0.07 2.52 7.48 -2.39 -0.02 2.50 16 38 H 0.09 1.99 7.62 -2.39 -0.02 1.97 16 39 H 0.07 2.24 7.60 -2.39 -0.02 2.22 16 40 H 0.05 1.64 7.68 -2.38 -0.02 1.62 16 41 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 44 H 0.06 1.85 7.13 -2.39 -0.02 1.83 16 45 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 46 H 0.05 1.97 7.94 -2.39 -0.02 1.95 16 47 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 48 H 0.06 2.96 6.06 -2.38 -0.01 2.95 16 49 H -0.02 -0.81 8.14 -2.39 -0.02 -0.83 16 50 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 51 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 52 H 0.23 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -67.44 402.15 4.41 -63.04 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.89 Total: 19.14 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 9.29 Total: 14.20 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -7.76 Total: -124.00 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.04 Total: -17.03 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -67.44 4.41 -63.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040425919.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.846 kcal (2) G-P(sol) polarization free energy of solvation -67.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds