Wall clock time and date at job start Wed Apr 1 2020 04:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47085 * 2 1 4 4 C 1.52992 * 109.47366 * 239.99685 * 2 1 3 5 5 C 1.50704 * 109.47135 * 64.99926 * 4 2 1 6 6 C 1.34665 * 126.59343 * 274.68691 * 5 4 2 7 7 N 1.34123 * 108.02024 * 179.87583 * 6 5 4 8 8 C 1.30496 * 109.25926 * 0.39812 * 7 6 5 9 9 N 1.35048 * 108.69519 * 359.75517 * 8 7 6 10 10 H 0.97010 * 126.39240 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.46730 * 119.99527 * 2 1 3 12 12 O 1.21283 * 119.99870 * 120.00536 * 11 2 1 13 13 N 1.34770 * 120.00089 * 300.00213 * 11 2 1 14 14 C 1.48165 * 127.02864 * 359.97438 * 13 11 2 15 15 C 1.55045 * 103.31103 * 219.04380 * 14 13 11 16 16 C 1.54172 * 102.72481 * 322.98851 * 15 14 13 17 17 C 1.47621 * 127.02588 * 180.02562 * 13 11 2 18 18 C 1.52500 * 110.01339 * 140.68548 * 16 15 14 19 19 C 1.53121 * 109.60301 * 61.56490 * 18 16 15 20 20 C 1.53193 * 109.29072 * 60.51059 * 19 18 16 21 21 N 1.46924 * 108.89672 * 304.93869 * 20 19 18 22 22 C 1.36937 * 120.67650 * 234.03124 * 21 20 19 23 23 H 1.07998 * 120.00101 * 27.37077 * 22 21 20 24 24 C 1.38812 * 119.99654 * 207.36410 * 22 21 20 25 25 N 1.31616 * 120.00150 * 17.24900 * 24 22 21 26 26 Si 1.86801 * 120.00021 * 197.24342 * 24 22 21 27 27 H 1.48502 * 109.46962 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.47056 * 120.00410 * 26 24 22 29 29 H 1.48500 * 109.47099 * 240.00642 * 26 24 22 30 30 C 1.47034 * 118.64108 * 54.01390 * 21 20 19 31 31 H 1.09000 * 109.47278 * 300.00447 * 1 2 3 32 32 H 1.09006 * 109.47065 * 60.00723 * 1 2 3 33 33 H 1.08998 * 109.47085 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47473 * 185.00209 * 4 2 1 35 35 H 1.08996 * 109.47351 * 305.00199 * 4 2 1 36 36 H 1.08007 * 125.98538 * 0.02562 * 6 5 4 37 37 H 1.07998 * 125.65407 * 179.74115 * 8 7 6 38 38 H 1.08993 * 110.64936 * 100.58486 * 14 13 11 39 39 H 1.09001 * 110.79017 * 337.56702 * 14 13 11 40 40 H 1.08999 * 110.75666 * 204.68280 * 15 14 13 41 41 H 1.08998 * 110.76234 * 81.30188 * 15 14 13 42 42 H 1.09007 * 109.96722 * 35.26909 * 17 13 11 43 43 H 1.08997 * 109.97070 * 274.00073 * 17 13 11 44 44 H 1.09001 * 109.44643 * 181.60548 * 18 16 15 45 45 H 1.09003 * 109.44588 * 301.55086 * 18 16 15 46 46 H 1.08998 * 109.50319 * 180.45850 * 19 18 16 47 47 H 1.09007 * 109.49962 * 300.53116 * 19 18 16 48 48 H 1.09002 * 109.56255 * 64.76243 * 20 19 18 49 49 H 1.08998 * 109.56461 * 184.99236 * 20 19 18 50 50 H 0.97006 * 120.00227 * 179.97438 * 25 24 22 51 51 H 1.08994 * 109.58390 * 187.42028 * 30 21 20 52 52 H 1.09000 * 109.58321 * 67.00447 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0570 -2.4765 6 6 0.4688 -0.0254 -3.1335 7 7 0.5108 0.8295 -4.1662 8 6 1.6681 1.4323 -4.1791 9 7 2.4039 0.9790 -3.1413 10 1 3.3045 1.2556 -2.9100 11 6 2.0323 -0.7103 1.2306 12 8 2.7296 -1.6964 1.1194 13 7 1.7066 -0.2498 2.4546 14 6 0.8712 0.9325 2.7699 15 6 1.5899 1.5620 3.9911 16 6 2.0704 0.3255 4.7767 17 6 2.1102 -0.8197 3.7552 18 6 3.4623 0.5778 5.3465 19 6 3.4134 1.7610 6.3171 20 6 2.4539 1.4341 7.4657 21 7 1.1454 1.0717 6.9041 22 6 0.0077 1.7157 7.3116 23 1 0.0629 2.7308 7.6762 24 6 -1.2165 1.0638 7.2559 25 7 -1.2597 -0.2470 7.1443 26 14 -2.8028 2.0467 7.3394 27 1 -2.4838 3.4918 7.4619 28 1 -3.5927 1.8177 6.1029 29 1 -3.5930 1.6120 8.5192 30 6 1.0827 0.0038 5.8954 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 3.1264 -0.7995 -1.2055 35 1 1.6055 -1.7198 -1.2950 36 1 -0.3611 -0.6657 -2.8730 37 1 1.9851 2.1711 -4.9003 38 1 -0.1413 0.6282 3.0346 39 1 0.8552 1.6295 1.9320 40 1 0.8937 2.1519 4.5872 41 1 2.4364 2.1691 3.6705 42 1 3.1205 -1.2233 3.6873 43 1 1.4142 -1.6052 4.0495 44 1 3.8046 -0.3117 5.8755 45 1 4.1518 0.8042 4.5332 46 1 4.4105 1.9450 6.7171 47 1 3.0628 2.6490 5.7910 48 1 2.8475 0.5977 8.0433 49 1 2.3472 2.3056 8.1115 50 1 -2.1152 -0.7026 7.1058 51 1 0.0740 -0.0539 5.4867 52 1 1.3481 -0.9485 6.3545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040443100.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:12 Heat of formation + Delta-G solvation = 37.603259 kcal Electronic energy + Delta-G solvation = -31698.832106 eV Core-core repulsion = 27699.334588 eV Total energy + Delta-G solvation = -3999.497518 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.31390 -40.30601 -38.62793 -35.82407 -35.14956 -33.17119 -32.71348 -31.39901 -30.06968 -29.85307 -29.14518 -26.82191 -25.85081 -25.39558 -23.56243 -22.45501 -22.23344 -21.59800 -21.05706 -20.51833 -19.03532 -18.15415 -18.01451 -16.83441 -16.55206 -15.86980 -15.76305 -15.13358 -14.89730 -14.76477 -14.23195 -14.08646 -14.00764 -13.83468 -13.65561 -13.46050 -13.08801 -12.99587 -12.89865 -12.60808 -12.48928 -12.25911 -12.06162 -11.93516 -11.65992 -11.43686 -11.29507 -11.12787 -10.99024 -10.94214 -10.72451 -10.41291 -10.26404 -10.20533 -10.18133 -10.07808 -9.85371 -9.73766 -9.51270 -9.42466 -8.58848 -8.53689 -8.45835 -6.73342 -5.85279 -3.26872 1.76769 2.72182 2.83736 2.91818 3.17322 3.31698 3.41123 3.42159 4.31132 4.43496 4.49930 4.62869 4.70315 4.82856 4.97391 5.02775 5.10359 5.16590 5.22830 5.31716 5.33938 5.45176 5.50052 5.56617 5.59586 5.62676 5.64984 5.71617 5.79642 5.86629 5.98478 6.02066 6.03187 6.11601 6.12771 6.20868 6.28331 6.34595 6.41699 6.47192 6.49832 6.60352 6.74171 6.81094 6.90929 6.96291 7.09575 7.26447 7.55850 7.73829 7.74208 7.81514 8.26400 8.37675 9.14710 9.78276 10.35595 11.23106 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013731 B = 0.002765 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.703995 B =10124.759137 C =11185.633986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.099 4.099 3 H 0.091 0.909 4 C -0.025 4.025 5 C -0.015 4.015 6 C -0.022 4.022 7 N -0.494 5.494 8 C 0.179 3.821 9 N -0.568 5.568 10 H 0.419 0.581 11 C 0.533 3.467 12 O -0.552 6.552 13 N -0.612 5.612 14 C 0.097 3.903 15 C -0.114 4.114 16 C -0.093 4.093 17 C 0.117 3.883 18 C -0.094 4.094 19 C -0.133 4.133 20 C 0.144 3.856 21 N -0.589 5.589 22 C -0.251 4.251 23 H 0.066 0.934 24 C 0.004 3.996 25 N -0.901 5.901 26 Si 0.898 3.102 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.291 1.291 30 C 0.187 3.813 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.169 0.831 37 H 0.206 0.794 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.045 0.955 46 H 0.048 0.952 47 H 0.059 0.941 48 H 0.016 0.984 49 H 0.052 0.948 50 H 0.253 0.747 51 H 0.091 0.909 52 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.366 3.514 -16.491 18.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.120 4.120 3 H 0.109 0.891 4 C -0.064 4.064 5 C -0.131 4.131 6 C -0.170 4.170 7 N -0.213 5.213 8 C -0.105 4.105 9 N -0.171 5.171 10 H 0.256 0.744 11 C 0.321 3.679 12 O -0.431 6.431 13 N -0.344 5.344 14 C -0.026 4.026 15 C -0.152 4.152 16 C -0.096 4.096 17 C -0.005 4.005 18 C -0.131 4.131 19 C -0.173 4.173 20 C 0.017 3.983 21 N -0.311 5.311 22 C -0.380 4.380 23 H 0.084 0.916 24 C -0.195 4.195 25 N -0.545 5.545 26 Si 0.728 3.272 27 H -0.203 1.203 28 H -0.215 1.215 29 H -0.218 1.218 30 C 0.061 3.939 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.186 0.814 37 H 0.223 0.777 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.118 0.882 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.034 0.966 49 H 0.071 0.929 50 H 0.064 0.936 51 H 0.109 0.891 52 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 7.905 2.971 -17.192 19.154 hybrid contribution 0.237 0.518 0.764 0.953 sum 8.141 3.490 -16.429 18.664 Atomic orbital electron populations 1.22014 0.92351 1.03280 1.03555 1.21173 0.98393 1.00305 0.92144 0.89067 1.19846 1.01947 0.97710 0.86927 1.21292 0.94155 0.98233 0.99409 1.22133 0.97634 1.02396 0.94801 1.70287 1.19362 1.10056 1.21623 1.24954 0.88865 1.02986 0.93703 1.43333 1.16686 1.33032 1.24065 0.74366 1.20118 0.80071 0.84365 0.83297 1.90684 1.39252 1.26856 1.86288 1.48883 1.50402 1.29917 1.05241 1.22776 0.95198 0.86575 0.98035 1.22689 1.00134 0.97346 0.94992 1.21839 0.97796 0.93559 0.96369 1.22110 1.00480 0.96607 0.81348 1.21376 0.95220 0.98616 0.97931 1.22030 0.98857 0.97936 0.98436 1.20908 0.86754 0.97640 0.92957 1.44035 1.01715 1.42043 1.43321 1.19197 0.84828 0.94858 1.39144 0.91617 1.25014 0.98264 0.95074 1.01168 1.70033 1.24376 1.06212 1.53896 0.86297 0.83926 0.79642 0.77378 1.20265 1.21520 1.21766 1.20754 0.97240 0.89632 0.86254 0.91216 0.90949 0.91813 0.90318 0.88624 0.81367 0.77729 0.90325 0.90834 0.88208 0.92302 0.91262 0.91241 0.92608 0.93669 0.93286 0.92251 0.96575 0.92945 0.93641 0.89110 0.96287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.62 37.16 0.32 -1.23 16 2 C -0.10 -1.04 2.03 -91.77 -0.19 -1.23 16 3 H 0.09 0.88 7.91 -51.93 -0.41 0.47 16 4 C -0.03 -0.25 4.60 -27.89 -0.13 -0.37 16 5 C -0.02 -0.14 6.08 -81.60 -0.50 -0.64 16 6 C -0.02 -0.23 10.12 -17.82 -0.18 -0.41 16 7 N -0.49 -5.66 11.25 -14.67 -0.16 -5.83 16 8 C 0.18 1.44 13.04 -90.37 -1.18 0.27 16 9 N -0.57 -4.13 6.15 -10.30 -0.06 -4.19 16 10 H 0.42 1.83 8.96 -40.82 -0.37 1.47 16 11 C 0.53 7.68 7.25 -10.99 -0.08 7.60 16 12 O -0.55 -9.69 16.26 5.56 0.09 -9.60 16 13 N -0.61 -9.05 3.29 -169.85 -0.56 -9.61 16 14 C 0.10 1.33 5.26 -2.05 -0.01 1.32 16 15 C -0.11 -1.77 5.00 -25.04 -0.13 -1.89 16 16 C -0.09 -1.58 0.63 -154.06 -0.10 -1.68 16 17 C 0.12 1.93 6.28 -3.16 -0.02 1.91 16 18 C -0.09 -1.49 4.33 -26.92 -0.12 -1.61 16 19 C -0.13 -2.15 5.89 -26.57 -0.16 -2.31 16 20 C 0.14 2.83 6.50 -3.71 -0.02 2.80 16 21 N -0.59 -13.53 2.50 -172.56 -0.43 -13.96 16 22 C -0.25 -6.38 9.59 -15.06 -0.14 -6.52 16 23 H 0.07 1.66 7.89 -52.49 -0.41 1.25 16 24 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 25 N -0.90 -24.73 11.18 55.49 0.62 -24.11 16 26 Si 0.90 20.56 29.59 -169.99 -5.03 15.53 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 C 0.19 4.06 3.65 -3.93 -0.01 4.04 16 31 H 0.07 0.73 5.29 -51.93 -0.27 0.45 16 32 H 0.07 0.68 6.20 -51.93 -0.32 0.36 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.17 1.59 8.03 -52.48 -0.42 1.17 16 37 H 0.21 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.08 1.16 7.97 -51.93 -0.41 0.75 16 39 H 0.07 0.83 6.54 -51.93 -0.34 0.49 16 40 H 0.10 1.81 7.48 -51.93 -0.39 1.42 16 41 H 0.06 0.85 7.62 -51.93 -0.40 0.45 16 42 H 0.07 1.15 7.60 -51.93 -0.39 0.75 16 43 H 0.07 1.22 7.67 -51.93 -0.40 0.83 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.97 7.13 -51.92 -0.37 0.60 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.05 1.02 7.94 -51.93 -0.41 0.60 16 50 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 51 H 0.09 2.20 6.06 -51.93 -0.31 1.89 16 52 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 396.90 15.07 5.98 5.98 Total: -1.00 -31.45 396.90 -10.85 -42.30 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -8.57 Total: 3.43 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -2.72 Total: 0.05 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.60 Total: -57.70 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.45 -10.85 -42.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040443100.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.904 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds