Wall clock time and date at job start Wed Apr 1 2020 04:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47085 * 2 1 4 4 C 1.52992 * 109.47366 * 239.99685 * 2 1 3 5 5 C 1.50704 * 109.47135 * 64.99926 * 4 2 1 6 6 C 1.34665 * 126.59343 * 274.68691 * 5 4 2 7 7 N 1.34123 * 108.02024 * 179.87583 * 6 5 4 8 8 C 1.30496 * 109.25926 * 0.39812 * 7 6 5 9 9 N 1.35048 * 108.69519 * 359.75517 * 8 7 6 10 10 H 0.97010 * 126.39240 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.46730 * 119.99527 * 2 1 3 12 12 O 1.21283 * 119.99870 * 120.00536 * 11 2 1 13 13 N 1.34770 * 120.00089 * 300.00213 * 11 2 1 14 14 C 1.48165 * 127.02864 * 359.97438 * 13 11 2 15 15 C 1.55045 * 103.31103 * 219.04380 * 14 13 11 16 16 C 1.54172 * 102.72481 * 322.98851 * 15 14 13 17 17 C 1.47621 * 127.02588 * 180.02562 * 13 11 2 18 18 C 1.52500 * 110.01339 * 140.68548 * 16 15 14 19 19 C 1.53121 * 109.60301 * 61.56490 * 18 16 15 20 20 C 1.53193 * 109.29072 * 60.51059 * 19 18 16 21 21 N 1.46924 * 108.89672 * 304.93869 * 20 19 18 22 22 C 1.36937 * 120.67650 * 234.03124 * 21 20 19 23 23 H 1.07998 * 120.00101 * 27.37077 * 22 21 20 24 24 C 1.38812 * 119.99654 * 207.36410 * 22 21 20 25 25 N 1.31616 * 120.00150 * 17.24900 * 24 22 21 26 26 Si 1.86801 * 120.00021 * 197.24342 * 24 22 21 27 27 H 1.48502 * 109.46962 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.47056 * 120.00410 * 26 24 22 29 29 H 1.48500 * 109.47099 * 240.00642 * 26 24 22 30 30 C 1.47034 * 118.64108 * 54.01390 * 21 20 19 31 31 H 1.09000 * 109.47278 * 300.00447 * 1 2 3 32 32 H 1.09006 * 109.47065 * 60.00723 * 1 2 3 33 33 H 1.08998 * 109.47085 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47473 * 185.00209 * 4 2 1 35 35 H 1.08996 * 109.47351 * 305.00199 * 4 2 1 36 36 H 1.08007 * 125.98538 * 0.02562 * 6 5 4 37 37 H 1.07998 * 125.65407 * 179.74115 * 8 7 6 38 38 H 1.08993 * 110.64936 * 100.58486 * 14 13 11 39 39 H 1.09001 * 110.79017 * 337.56702 * 14 13 11 40 40 H 1.08999 * 110.75666 * 204.68280 * 15 14 13 41 41 H 1.08998 * 110.76234 * 81.30188 * 15 14 13 42 42 H 1.09007 * 109.96722 * 35.26909 * 17 13 11 43 43 H 1.08997 * 109.97070 * 274.00073 * 17 13 11 44 44 H 1.09001 * 109.44643 * 181.60548 * 18 16 15 45 45 H 1.09003 * 109.44588 * 301.55086 * 18 16 15 46 46 H 1.08998 * 109.50319 * 180.45850 * 19 18 16 47 47 H 1.09007 * 109.49962 * 300.53116 * 19 18 16 48 48 H 1.09002 * 109.56255 * 64.76243 * 20 19 18 49 49 H 1.08998 * 109.56461 * 184.99236 * 20 19 18 50 50 H 0.97006 * 120.00227 * 179.97438 * 25 24 22 51 51 H 1.08994 * 109.58390 * 187.42028 * 30 21 20 52 52 H 1.09000 * 109.58321 * 67.00447 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0570 -2.4765 6 6 0.4688 -0.0254 -3.1335 7 7 0.5108 0.8295 -4.1662 8 6 1.6681 1.4323 -4.1791 9 7 2.4039 0.9790 -3.1413 10 1 3.3045 1.2556 -2.9100 11 6 2.0323 -0.7103 1.2306 12 8 2.7296 -1.6964 1.1194 13 7 1.7066 -0.2498 2.4546 14 6 0.8712 0.9325 2.7699 15 6 1.5899 1.5620 3.9911 16 6 2.0704 0.3255 4.7767 17 6 2.1102 -0.8197 3.7552 18 6 3.4623 0.5778 5.3465 19 6 3.4134 1.7610 6.3171 20 6 2.4539 1.4341 7.4657 21 7 1.1454 1.0717 6.9041 22 6 0.0077 1.7157 7.3116 23 1 0.0629 2.7308 7.6762 24 6 -1.2165 1.0638 7.2559 25 7 -1.2597 -0.2470 7.1443 26 14 -2.8028 2.0467 7.3394 27 1 -2.4838 3.4918 7.4619 28 1 -3.5927 1.8177 6.1029 29 1 -3.5930 1.6120 8.5192 30 6 1.0827 0.0038 5.8954 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 3.1264 -0.7995 -1.2055 35 1 1.6055 -1.7198 -1.2950 36 1 -0.3611 -0.6657 -2.8730 37 1 1.9851 2.1711 -4.9003 38 1 -0.1413 0.6282 3.0346 39 1 0.8552 1.6295 1.9320 40 1 0.8937 2.1519 4.5872 41 1 2.4364 2.1691 3.6705 42 1 3.1205 -1.2233 3.6873 43 1 1.4142 -1.6052 4.0495 44 1 3.8046 -0.3117 5.8755 45 1 4.1518 0.8042 4.5332 46 1 4.4105 1.9450 6.7171 47 1 3.0628 2.6490 5.7910 48 1 2.8475 0.5977 8.0433 49 1 2.3472 2.3056 8.1115 50 1 -2.1152 -0.7026 7.1058 51 1 0.0740 -0.0539 5.4867 52 1 1.3481 -0.9485 6.3545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040443100.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:11 Heat of formation + Delta-G solvation = 20.305357 kcal Electronic energy + Delta-G solvation = -31699.582199 eV Core-core repulsion = 27699.334588 eV Total energy + Delta-G solvation = -4000.247612 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.97897 -41.55894 -39.95983 -37.29237 -36.08892 -34.86347 -33.41245 -32.80772 -31.73322 -30.76680 -30.39367 -27.60091 -27.33885 -27.08580 -24.72941 -23.91712 -23.45927 -22.36516 -22.06173 -21.63059 -20.19861 -19.55438 -18.82762 -18.40818 -17.80237 -17.12075 -16.86421 -16.58431 -15.97302 -15.74374 -15.65386 -15.41003 -15.11735 -15.03594 -14.82801 -14.54223 -14.42792 -14.13760 -14.04489 -13.82372 -13.70436 -13.43948 -13.30353 -13.15176 -12.93597 -12.90466 -12.69040 -12.52930 -12.41824 -12.16240 -12.11738 -12.07713 -11.79637 -11.63539 -11.32394 -11.17602 -11.00359 -10.96794 -10.90384 -10.73976 -10.49936 -9.72357 -9.28660 -8.63579 -7.83329 -5.27176 1.10382 1.47741 1.51656 1.57589 1.60426 1.93957 2.24606 2.33378 2.54247 3.29240 3.35044 3.60649 3.74423 3.80833 3.83098 3.88583 3.95170 4.00375 4.19352 4.27631 4.29044 4.33417 4.40062 4.40611 4.50463 4.61296 4.63873 4.65315 4.74957 4.76803 4.77985 4.80756 4.88482 4.94367 4.96506 5.04005 5.11046 5.14117 5.19948 5.25155 5.30397 5.36335 5.37062 5.43245 5.51915 5.64459 5.70243 5.78391 5.80333 6.42578 6.56759 6.59851 7.09164 7.16790 7.18915 7.90340 8.42921 9.22876 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013731 B = 0.002765 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.703995 B =10124.759137 C =11185.633986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.112 0.888 4 C -0.016 4.016 5 C -0.016 4.016 6 C -0.040 4.040 7 N -0.539 5.539 8 C 0.190 3.810 9 N -0.557 5.557 10 H 0.434 0.566 11 C 0.531 3.469 12 O -0.585 6.585 13 N -0.611 5.611 14 C 0.103 3.897 15 C -0.106 4.106 16 C -0.084 4.084 17 C 0.122 3.878 18 C -0.091 4.091 19 C -0.120 4.120 20 C 0.137 3.863 21 N -0.604 5.604 22 C -0.250 4.250 23 H 0.067 0.933 24 C -0.047 4.047 25 N -0.934 5.934 26 Si 0.958 3.042 27 H -0.265 1.265 28 H -0.289 1.289 29 H -0.300 1.300 30 C 0.201 3.799 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.168 0.832 37 H 0.243 0.757 38 H 0.063 0.937 39 H 0.109 0.891 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.049 0.951 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.006 0.994 49 H 0.053 0.947 50 H 0.247 0.753 51 H 0.059 0.941 52 H -0.016 1.016 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.967 6.061 -18.450 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 H 0.130 0.870 4 C -0.055 4.055 5 C -0.132 4.132 6 C -0.188 4.188 7 N -0.259 5.259 8 C -0.094 4.094 9 N -0.162 5.162 10 H 0.275 0.725 11 C 0.322 3.678 12 O -0.466 6.466 13 N -0.343 5.343 14 C -0.019 4.019 15 C -0.144 4.144 16 C -0.087 4.087 17 C -0.002 4.002 18 C -0.129 4.129 19 C -0.159 4.159 20 C 0.012 3.988 21 N -0.326 5.326 22 C -0.381 4.381 23 H 0.085 0.915 24 C -0.242 4.242 25 N -0.581 5.581 26 Si 0.787 3.213 27 H -0.189 1.189 28 H -0.216 1.216 29 H -0.227 1.227 30 C 0.075 3.925 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.186 0.814 37 H 0.259 0.741 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.083 0.917 48 H 0.024 0.976 49 H 0.071 0.929 50 H 0.057 0.943 51 H 0.078 0.922 52 H 0.002 0.998 Dipole moment (debyes) X Y Z Total from point charges 9.545 5.551 -19.147 22.103 hybrid contribution -0.213 -0.306 1.414 1.462 sum 9.332 5.245 -17.734 20.714 Atomic orbital electron populations 1.21977 0.91890 1.03007 1.03852 1.21150 0.98500 1.00810 0.90314 0.86989 1.19698 1.01785 0.97268 0.86788 1.21067 0.94103 0.98752 0.99284 1.22268 0.98366 1.02856 0.95271 1.70271 1.21451 1.11481 1.22648 1.25673 0.87846 1.02249 0.93620 1.43300 1.17222 1.32193 1.23480 0.72549 1.20822 0.79199 0.83928 0.83852 1.90670 1.40787 1.28403 1.86728 1.48924 1.50455 1.30093 1.04851 1.22761 0.93924 0.86563 0.98643 1.22584 1.00455 0.96418 0.94955 1.21593 0.97430 0.94655 0.94974 1.21894 0.99911 0.95951 0.82423 1.21369 0.94494 0.98417 0.98579 1.21892 0.99176 0.97935 0.96891 1.21082 0.86052 0.97187 0.94505 1.44273 1.02441 1.41928 1.44003 1.19471 0.85805 0.94935 1.37862 0.91485 1.25672 1.00962 0.95747 1.01835 1.70192 1.24417 1.07679 1.55812 0.85348 0.80379 0.78963 0.76632 1.18919 1.21588 1.22736 1.20450 0.96885 0.88006 0.87184 0.91493 0.89914 0.92526 0.90251 0.89607 0.81443 0.74110 0.91892 0.87285 0.90655 0.89885 0.91126 0.93566 0.93218 0.91146 0.90332 0.91722 0.97567 0.92851 0.94341 0.92222 0.99835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.62 71.98 0.62 -2.15 16 2 C -0.09 -1.64 2.03 -11.54 -0.02 -1.66 16 3 H 0.11 1.73 7.91 -2.39 -0.02 1.71 16 4 C -0.02 -0.29 4.60 29.85 0.14 -0.15 16 5 C -0.02 -0.26 6.08 40.95 0.25 -0.01 16 6 C -0.04 -0.81 10.12 83.52 0.84 0.04 16 7 N -0.54 -11.43 11.25 -200.31 -2.25 -13.69 16 8 C 0.19 2.52 13.04 180.26 2.35 4.87 16 9 N -0.56 -6.42 6.15 -186.49 -1.15 -7.57 16 10 H 0.43 2.26 8.96 -92.70 -0.83 1.43 16 11 C 0.53 14.60 7.25 87.66 0.64 15.24 16 12 O -0.59 -20.15 16.26 -3.04 -0.05 -20.20 16 13 N -0.61 -17.43 3.29 -809.67 -2.66 -20.09 16 14 C 0.10 2.67 5.26 86.76 0.46 3.13 16 15 C -0.11 -3.12 5.00 31.69 0.16 -2.96 16 16 C -0.08 -2.84 0.63 -51.89 -0.03 -2.87 16 17 C 0.12 4.03 6.28 86.34 0.54 4.57 16 18 C -0.09 -2.71 4.33 30.47 0.13 -2.58 16 19 C -0.12 -3.58 5.89 30.70 0.18 -3.40 16 20 C 0.14 5.33 6.50 86.36 0.56 5.89 16 21 N -0.60 -28.20 2.50 -699.86 -1.75 -29.96 16 22 C -0.25 -12.90 9.59 84.03 0.81 -12.09 16 23 H 0.07 3.38 7.89 -2.91 -0.02 3.36 16 24 C -0.05 -2.49 4.92 84.86 0.42 -2.07 16 25 N -0.93 -53.45 11.18 21.65 0.24 -53.21 16 26 Si 0.96 42.97 29.59 68.60 2.03 45.00 16 27 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 29 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 30 C 0.20 9.05 3.65 86.16 0.31 9.36 16 31 H 0.07 1.28 5.29 -2.39 -0.01 1.26 16 32 H 0.08 1.40 6.20 -2.38 -0.01 1.38 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.42 7.96 -2.38 -0.02 1.40 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 36 H 0.17 3.12 8.03 -2.91 -0.02 3.10 16 37 H 0.24 1.04 8.06 -2.91 -0.02 1.02 16 38 H 0.06 1.86 7.97 -2.39 -0.02 1.84 16 39 H 0.11 2.08 6.54 -2.39 -0.02 2.06 16 40 H 0.07 2.65 7.48 -2.39 -0.02 2.64 16 41 H 0.08 2.07 7.62 -2.39 -0.02 2.06 16 42 H 0.07 2.32 7.60 -2.38 -0.02 2.30 16 43 H 0.05 1.73 7.67 -2.39 -0.02 1.71 16 44 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.06 1.89 7.13 -2.38 -0.02 1.88 16 48 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 49 H 0.05 2.03 7.94 -2.39 -0.02 2.01 16 50 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 51 H 0.06 3.06 6.06 -2.39 -0.01 3.04 16 52 H -0.02 -0.83 8.14 -2.39 -0.02 -0.85 16 Total: -1.00 -70.53 396.90 2.85 -67.69 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.09 Total: 18.89 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 8.35 Total: 13.14 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -7.58 Total: -124.52 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.05 Total: -20.20 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -70.53 2.85 -67.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040443100.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.991 kcal (2) G-P(sol) polarization free energy of solvation -70.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds