Wall clock time and date at job start Wed Apr 1 2020 04:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47127 * 2 1 4 4 C 1.53000 * 109.46964 * 239.99727 * 2 1 3 5 5 C 1.50702 * 109.47093 * 65.00082 * 4 2 1 6 6 C 1.34667 * 126.59164 * 274.68450 * 5 4 2 7 7 N 1.34123 * 108.02034 * 179.87326 * 6 5 4 8 8 C 1.30499 * 109.25732 * 0.39985 * 7 6 5 9 9 N 1.35041 * 108.70001 * 359.75118 * 8 7 6 10 10 H 0.97003 * 126.40030 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47317 * 120.00040 * 2 1 3 12 12 O 1.21278 * 120.00118 * 83.54959 * 11 2 1 13 13 N 1.34781 * 119.99660 * 263.55221 * 11 2 1 14 14 C 1.48153 * 127.02523 * 4.49497 * 13 11 2 15 15 C 1.55043 * 103.31442 * 140.98504 * 14 13 11 16 16 C 1.54175 * 102.72326 * 37.00882 * 15 14 13 17 17 C 1.47614 * 127.01930 * 184.49213 * 13 11 2 18 18 C 1.52484 * 110.02648 * 219.30400 * 16 15 14 19 19 C 1.53127 * 109.59044 * 298.37600 * 18 16 15 20 20 C 1.53184 * 109.29413 * 299.50801 * 19 18 16 21 21 N 1.46924 * 108.88815 * 55.07239 * 20 19 18 22 22 C 1.36932 * 120.68487 * 125.94921 * 21 20 19 23 23 H 1.08001 * 119.99801 * 324.04535 * 22 21 20 24 24 C 1.38805 * 120.00459 * 144.04749 * 22 21 20 25 25 N 1.31627 * 119.99960 * 347.73603 * 24 22 21 26 26 Si 1.86805 * 120.00150 * 167.74333 * 24 22 21 27 27 H 1.48499 * 109.47147 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47034 * 119.99810 * 26 24 22 29 29 H 1.48499 * 109.46665 * 239.99778 * 26 24 22 30 30 C 1.47040 * 118.63946 * 305.97528 * 21 20 19 31 31 H 1.09004 * 109.47390 * 172.81368 * 1 2 3 32 32 H 1.09005 * 109.47053 * 292.80847 * 1 2 3 33 33 H 1.08996 * 109.47574 * 52.81207 * 1 2 3 34 34 H 1.08998 * 109.46800 * 184.99870 * 4 2 1 35 35 H 1.08999 * 109.47461 * 305.00015 * 4 2 1 36 36 H 1.08002 * 125.98784 * 0.02873 * 6 5 4 37 37 H 1.07999 * 125.65318 * 179.77667 * 8 7 6 38 38 H 1.09002 * 110.65186 * 259.44131 * 14 13 11 39 39 H 1.09005 * 110.65052 * 22.36130 * 14 13 11 40 40 H 1.08995 * 110.75774 * 278.70208 * 15 14 13 41 41 H 1.09003 * 110.76030 * 155.31568 * 15 14 13 42 42 H 1.08999 * 109.96980 * 85.96590 * 17 13 11 43 43 H 1.08999 * 110.00520 * 324.71315 * 17 13 11 44 44 H 1.09002 * 109.45270 * 178.34117 * 18 16 15 45 45 H 1.09006 * 109.44867 * 58.40305 * 18 16 15 46 46 H 1.09000 * 109.50189 * 59.45172 * 19 18 16 47 47 H 1.09006 * 109.50123 * 179.56149 * 19 18 16 48 48 H 1.09001 * 109.57133 * 174.89714 * 20 19 18 49 49 H 1.09004 * 109.56688 * 295.25240 * 20 19 18 50 50 H 0.96994 * 119.99650 * 180.02562 * 25 24 22 51 51 H 1.08996 * 109.58508 * 172.58307 * 30 21 20 52 52 H 1.09008 * 109.57631 * 292.98908 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6412 0.0570 -2.4766 6 6 0.4686 -0.0254 -3.1335 7 7 0.5105 0.8295 -4.1661 8 6 1.6679 1.4323 -4.1791 9 7 2.4037 0.9791 -3.1414 10 1 3.3045 1.2551 -2.9105 11 6 2.0324 -0.7104 1.2305 12 8 2.1233 -1.9198 1.2379 13 7 2.3806 -0.0017 2.3228 14 6 2.2462 1.4608 2.5175 15 6 1.8039 1.5846 3.9984 16 6 2.6051 0.4619 4.6871 17 6 2.9737 -0.5243 3.5694 18 6 1.7419 -0.2257 5.7394 19 6 1.3373 0.7877 6.8137 20 6 2.5969 1.3444 7.4845 21 7 3.4821 1.8968 6.4500 22 6 3.9377 3.1852 6.5355 23 1 3.2985 3.9587 6.9349 24 6 5.2211 3.4973 6.1086 25 7 6.0812 2.5349 5.8506 26 14 5.7279 5.2833 5.9007 27 1 4.5865 6.1658 6.2521 28 1 6.8764 5.5792 6.7943 29 1 6.1234 5.5244 4.4898 30 6 3.8682 1.0378 5.3208 31 1 -0.3634 -1.0196 -0.1286 32 1 -0.3633 0.3984 0.9474 33 1 -0.3634 0.6211 -0.8186 34 1 3.1262 -0.7995 -1.2055 35 1 1.6053 -1.7199 -1.2951 36 1 -0.3613 -0.6656 -2.8729 37 1 1.9846 2.1716 -4.8999 38 1 3.2025 1.9592 2.3591 39 1 1.4863 1.8691 1.8512 40 1 0.7324 1.4111 4.0973 41 1 2.0776 2.5589 4.4032 42 1 4.0574 -0.5853 3.4691 43 1 2.5647 -1.5097 3.7925 44 1 2.3072 -1.0362 6.1995 45 1 0.8469 -0.6303 5.2667 46 1 0.7798 1.6032 6.3530 47 1 0.7139 0.2965 7.5609 48 1 2.3197 2.1312 8.1860 49 1 3.1116 0.5439 8.0159 50 1 6.9781 2.7531 5.5527 51 1 4.4114 1.6274 4.5823 52 1 4.5004 0.2254 5.6793 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040443104.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:18 Heat of formation + Delta-G solvation = 32.681967 kcal Electronic energy + Delta-G solvation = -31611.557468 eV Core-core repulsion = 27611.846547 eV Total energy + Delta-G solvation = -3999.710921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.30872 -40.28090 -38.64195 -35.82145 -35.10708 -33.14258 -32.70253 -31.32420 -30.11057 -29.91722 -29.18655 -26.88797 -25.93265 -25.37903 -23.38635 -22.60103 -22.24235 -21.63790 -21.04956 -20.48683 -18.95877 -18.13643 -18.01045 -16.99506 -16.53675 -15.98998 -15.50360 -15.09090 -14.95556 -14.75374 -14.28105 -14.13701 -14.02260 -13.84587 -13.63630 -13.53488 -13.16812 -13.01172 -12.82157 -12.59508 -12.53186 -12.29505 -12.12242 -11.92995 -11.63550 -11.47412 -11.33217 -11.17218 -11.00345 -10.97905 -10.77688 -10.45340 -10.27263 -10.22069 -10.18377 -10.13001 -9.86842 -9.74306 -9.51245 -9.40977 -8.59248 -8.57138 -8.47463 -6.61719 -5.87815 -3.38800 1.76465 2.69596 2.84930 2.92046 3.14798 3.27969 3.37439 3.38717 4.30377 4.40253 4.49713 4.56272 4.73373 4.81146 4.96290 5.02685 5.09851 5.14706 5.21125 5.29760 5.33728 5.43631 5.50122 5.55400 5.58354 5.61730 5.62476 5.66837 5.77758 5.83433 5.96944 5.99684 6.02008 6.07119 6.11528 6.20422 6.28040 6.34215 6.42521 6.48516 6.49436 6.60895 6.74667 6.82273 6.90486 6.98732 7.10236 7.22727 7.48447 7.71764 7.73837 7.81444 8.25498 8.41868 9.14245 9.74759 10.37696 11.20169 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.002836 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.391089 B = 9869.674736 C =11253.256260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.087 0.913 4 C -0.028 4.028 5 C -0.015 4.015 6 C -0.021 4.021 7 N -0.495 5.495 8 C 0.180 3.820 9 N -0.567 5.567 10 H 0.420 0.580 11 C 0.534 3.466 12 O -0.549 6.549 13 N -0.614 5.614 14 C 0.097 3.903 15 C -0.112 4.112 16 C -0.093 4.093 17 C 0.116 3.884 18 C -0.093 4.093 19 C -0.134 4.134 20 C 0.144 3.856 21 N -0.587 5.587 22 C -0.256 4.256 23 H 0.062 0.938 24 C 0.011 3.989 25 N -0.898 5.898 26 Si 0.898 3.102 27 H -0.276 1.276 28 H -0.289 1.289 29 H -0.289 1.289 30 C 0.193 3.807 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.169 0.831 37 H 0.207 0.793 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.046 0.954 46 H 0.058 0.942 47 H 0.049 0.951 48 H 0.052 0.948 49 H 0.016 0.984 50 H 0.254 0.746 51 H 0.077 0.923 52 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.496 -3.051 -13.485 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.105 0.895 4 C -0.067 4.067 5 C -0.131 4.131 6 C -0.169 4.169 7 N -0.214 5.214 8 C -0.103 4.103 9 N -0.170 5.170 10 H 0.257 0.743 11 C 0.322 3.678 12 O -0.427 6.427 13 N -0.347 5.347 14 C -0.026 4.026 15 C -0.150 4.150 16 C -0.096 4.096 17 C -0.007 4.007 18 C -0.131 4.131 19 C -0.173 4.173 20 C 0.018 3.982 21 N -0.309 5.309 22 C -0.386 4.386 23 H 0.080 0.920 24 C -0.189 4.189 25 N -0.541 5.541 26 Si 0.728 3.272 27 H -0.201 1.201 28 H -0.216 1.216 29 H -0.216 1.216 30 C 0.067 3.933 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.186 0.814 37 H 0.223 0.777 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.118 0.882 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.034 0.966 50 H 0.064 0.936 51 H 0.096 0.904 52 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -8.968 -3.602 -14.172 17.154 hybrid contribution 1.623 1.055 0.567 2.017 sum -7.346 -2.547 -13.605 15.670 Atomic orbital electron populations 1.21770 0.92119 1.03193 1.02708 1.21217 0.98469 1.00279 0.92185 0.89489 1.19901 1.01501 0.98140 0.87152 1.21233 0.94234 0.98309 0.99348 1.22116 0.97603 1.02387 0.94809 1.70290 1.19392 1.10105 1.21630 1.24961 0.88824 1.02899 0.93665 1.43346 1.16731 1.32941 1.24019 0.74256 1.20125 0.77261 0.87098 0.83311 1.90682 1.55127 1.13875 1.83037 1.48956 1.61489 1.09174 1.15102 1.22707 1.01353 0.80272 0.98269 1.22666 0.98742 1.01198 0.92388 1.21836 0.99633 0.94230 0.93874 1.22130 0.97971 0.97904 0.82670 1.21367 0.97994 0.97606 0.96154 1.22034 0.99224 0.98359 0.97668 1.20937 0.89893 0.96173 0.91234 1.43923 1.55550 1.11160 1.20308 1.19115 0.94845 0.84344 1.40309 0.92035 1.25262 0.95376 0.97088 1.01134 1.70006 1.04765 1.30524 1.48842 0.86297 0.78402 0.85075 0.77439 1.20117 1.21606 1.21605 1.20628 0.89426 0.93182 0.90105 0.91544 0.92162 0.91042 0.90840 0.88128 0.81402 0.77694 0.90654 0.90935 0.92149 0.88247 0.91356 0.91124 0.92588 0.93560 0.92280 0.93259 0.92920 0.96561 0.93641 0.90424 0.96079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.66 37.16 0.32 -1.03 16 2 C -0.10 -1.05 2.18 -91.77 -0.20 -1.25 16 3 H 0.09 0.86 6.86 -51.93 -0.36 0.50 16 4 C -0.03 -0.27 4.84 -27.88 -0.13 -0.41 16 5 C -0.02 -0.14 6.09 -81.60 -0.50 -0.64 16 6 C -0.02 -0.22 10.29 -17.82 -0.18 -0.41 16 7 N -0.50 -5.63 11.25 -14.67 -0.17 -5.80 16 8 C 0.18 1.49 13.04 -90.38 -1.18 0.31 16 9 N -0.57 -4.27 6.15 -10.30 -0.06 -4.33 16 10 H 0.42 2.05 8.96 -40.82 -0.37 1.68 16 11 C 0.53 7.66 6.86 -10.98 -0.08 7.59 16 12 O -0.55 -9.65 16.73 5.56 0.09 -9.55 16 13 N -0.61 -9.04 3.30 -169.84 -0.56 -9.60 16 14 C 0.10 1.31 6.62 -2.05 -0.01 1.30 16 15 C -0.11 -1.73 5.00 -25.04 -0.13 -1.86 16 16 C -0.09 -1.58 0.63 -154.08 -0.10 -1.68 16 17 C 0.12 1.89 6.30 -3.15 -0.02 1.88 16 18 C -0.09 -1.50 4.34 -26.93 -0.12 -1.62 16 19 C -0.13 -2.18 5.89 -26.57 -0.16 -2.34 16 20 C 0.14 2.86 6.50 -3.72 -0.02 2.83 16 21 N -0.59 -13.49 2.46 -172.59 -0.42 -13.92 16 22 C -0.26 -6.51 9.51 -15.06 -0.14 -6.65 16 23 H 0.06 1.56 7.86 -52.49 -0.41 1.15 16 24 C 0.01 0.29 4.98 -17.43 -0.09 0.21 16 25 N -0.90 -24.66 11.54 55.49 0.64 -24.02 16 26 Si 0.90 20.43 29.57 -169.99 -5.03 15.41 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 30 C 0.19 4.15 3.58 -3.95 -0.01 4.13 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 33 H 0.07 0.64 6.68 -51.93 -0.35 0.29 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.10 1.02 8.02 -51.93 -0.42 0.61 16 36 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.21 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.07 0.81 7.06 -51.93 -0.37 0.44 16 40 H 0.06 0.87 7.63 -51.93 -0.40 0.48 16 41 H 0.10 1.78 7.48 -51.93 -0.39 1.39 16 42 H 0.07 1.18 7.67 -51.93 -0.40 0.78 16 43 H 0.07 1.18 7.56 -51.93 -0.39 0.78 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.97 7.13 -51.93 -0.37 0.60 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 51 H 0.08 1.86 6.58 -51.93 -0.34 1.52 16 52 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 LS Contribution 402.70 15.07 6.07 6.07 Total: -1.00 -31.48 402.70 -10.93 -42.41 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -8.75 Total: 2.96 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -2.74 Total: 0.37 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.57 Total: -57.66 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.48 -10.93 -42.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040443104.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.092 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds