Wall clock time and date at job start Wed Apr 1 2020 04:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47127 * 2 1 4 4 C 1.53000 * 109.46964 * 239.99727 * 2 1 3 5 5 C 1.50702 * 109.47093 * 65.00082 * 4 2 1 6 6 C 1.34667 * 126.59164 * 274.68450 * 5 4 2 7 7 N 1.34123 * 108.02034 * 179.87326 * 6 5 4 8 8 C 1.30499 * 109.25732 * 0.39985 * 7 6 5 9 9 N 1.35041 * 108.70001 * 359.75118 * 8 7 6 10 10 H 0.97003 * 126.40030 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47317 * 120.00040 * 2 1 3 12 12 O 1.21278 * 120.00118 * 83.54959 * 11 2 1 13 13 N 1.34781 * 119.99660 * 263.55221 * 11 2 1 14 14 C 1.48153 * 127.02523 * 4.49497 * 13 11 2 15 15 C 1.55043 * 103.31442 * 140.98504 * 14 13 11 16 16 C 1.54175 * 102.72326 * 37.00882 * 15 14 13 17 17 C 1.47614 * 127.01930 * 184.49213 * 13 11 2 18 18 C 1.52484 * 110.02648 * 219.30400 * 16 15 14 19 19 C 1.53127 * 109.59044 * 298.37600 * 18 16 15 20 20 C 1.53184 * 109.29413 * 299.50801 * 19 18 16 21 21 N 1.46924 * 108.88815 * 55.07239 * 20 19 18 22 22 C 1.36932 * 120.68487 * 125.94921 * 21 20 19 23 23 H 1.08001 * 119.99801 * 324.04535 * 22 21 20 24 24 C 1.38805 * 120.00459 * 144.04749 * 22 21 20 25 25 N 1.31627 * 119.99960 * 347.73603 * 24 22 21 26 26 Si 1.86805 * 120.00150 * 167.74333 * 24 22 21 27 27 H 1.48499 * 109.47147 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47034 * 119.99810 * 26 24 22 29 29 H 1.48499 * 109.46665 * 239.99778 * 26 24 22 30 30 C 1.47040 * 118.63946 * 305.97528 * 21 20 19 31 31 H 1.09004 * 109.47390 * 172.81368 * 1 2 3 32 32 H 1.09005 * 109.47053 * 292.80847 * 1 2 3 33 33 H 1.08996 * 109.47574 * 52.81207 * 1 2 3 34 34 H 1.08998 * 109.46800 * 184.99870 * 4 2 1 35 35 H 1.08999 * 109.47461 * 305.00015 * 4 2 1 36 36 H 1.08002 * 125.98784 * 0.02873 * 6 5 4 37 37 H 1.07999 * 125.65318 * 179.77667 * 8 7 6 38 38 H 1.09002 * 110.65186 * 259.44131 * 14 13 11 39 39 H 1.09005 * 110.65052 * 22.36130 * 14 13 11 40 40 H 1.08995 * 110.75774 * 278.70208 * 15 14 13 41 41 H 1.09003 * 110.76030 * 155.31568 * 15 14 13 42 42 H 1.08999 * 109.96980 * 85.96590 * 17 13 11 43 43 H 1.08999 * 110.00520 * 324.71315 * 17 13 11 44 44 H 1.09002 * 109.45270 * 178.34117 * 18 16 15 45 45 H 1.09006 * 109.44867 * 58.40305 * 18 16 15 46 46 H 1.09000 * 109.50189 * 59.45172 * 19 18 16 47 47 H 1.09006 * 109.50123 * 179.56149 * 19 18 16 48 48 H 1.09001 * 109.57133 * 174.89714 * 20 19 18 49 49 H 1.09004 * 109.56688 * 295.25240 * 20 19 18 50 50 H 0.96994 * 119.99650 * 180.02562 * 25 24 22 51 51 H 1.08996 * 109.58508 * 172.58307 * 30 21 20 52 52 H 1.09008 * 109.57631 * 292.98908 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6412 0.0570 -2.4766 6 6 0.4686 -0.0254 -3.1335 7 7 0.5105 0.8295 -4.1661 8 6 1.6679 1.4323 -4.1791 9 7 2.4037 0.9791 -3.1414 10 1 3.3045 1.2551 -2.9105 11 6 2.0324 -0.7104 1.2305 12 8 2.1233 -1.9198 1.2379 13 7 2.3806 -0.0017 2.3228 14 6 2.2462 1.4608 2.5175 15 6 1.8039 1.5846 3.9984 16 6 2.6051 0.4619 4.6871 17 6 2.9737 -0.5243 3.5694 18 6 1.7419 -0.2257 5.7394 19 6 1.3373 0.7877 6.8137 20 6 2.5969 1.3444 7.4845 21 7 3.4821 1.8968 6.4500 22 6 3.9377 3.1852 6.5355 23 1 3.2985 3.9587 6.9349 24 6 5.2211 3.4973 6.1086 25 7 6.0812 2.5349 5.8506 26 14 5.7279 5.2833 5.9007 27 1 4.5865 6.1658 6.2521 28 1 6.8764 5.5792 6.7943 29 1 6.1234 5.5244 4.4898 30 6 3.8682 1.0378 5.3208 31 1 -0.3634 -1.0196 -0.1286 32 1 -0.3633 0.3984 0.9474 33 1 -0.3634 0.6211 -0.8186 34 1 3.1262 -0.7995 -1.2055 35 1 1.6053 -1.7199 -1.2951 36 1 -0.3613 -0.6656 -2.8729 37 1 1.9846 2.1716 -4.8999 38 1 3.2025 1.9592 2.3591 39 1 1.4863 1.8691 1.8512 40 1 0.7324 1.4111 4.0973 41 1 2.0776 2.5589 4.4032 42 1 4.0574 -0.5853 3.4691 43 1 2.5647 -1.5097 3.7925 44 1 2.3072 -1.0362 6.1995 45 1 0.8469 -0.6303 5.2667 46 1 0.7798 1.6032 6.3530 47 1 0.7139 0.2965 7.5609 48 1 2.3197 2.1312 8.1860 49 1 3.1116 0.5439 8.0159 50 1 6.9781 2.7531 5.5527 51 1 4.4114 1.6274 4.5823 52 1 4.5004 0.2254 5.6793 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040443104.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:17 Heat of formation + Delta-G solvation = 15.681902 kcal Electronic energy + Delta-G solvation = -31612.294646 eV Core-core repulsion = 27611.846547 eV Total energy + Delta-G solvation = -4000.448100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.98023 -41.53352 -39.96593 -37.28304 -36.03393 -34.85259 -33.39176 -32.77319 -31.78462 -30.75755 -30.45102 -27.66854 -27.34797 -27.10787 -24.56869 -23.94236 -23.60360 -22.38698 -22.03854 -21.63204 -20.12976 -19.49067 -18.86436 -18.41008 -17.94504 -17.19250 -16.71133 -16.53119 -15.87800 -15.79535 -15.71424 -15.43261 -15.16012 -15.03710 -14.76522 -14.53680 -14.47112 -14.22579 -14.12589 -13.74257 -13.64755 -13.49187 -13.30669 -13.20821 -12.91429 -12.87578 -12.71750 -12.54200 -12.40487 -12.28722 -12.12366 -12.10478 -11.86039 -11.65053 -11.32225 -11.17970 -11.01231 -10.98185 -10.91775 -10.71569 -10.54582 -9.73040 -9.29068 -8.52469 -7.84756 -5.38995 1.08677 1.46020 1.49886 1.57456 1.59059 1.92155 2.24177 2.32464 2.51864 3.28632 3.34386 3.60738 3.73638 3.76292 3.83707 3.91453 3.93671 4.01460 4.17185 4.26195 4.29533 4.34415 4.38097 4.39710 4.50444 4.61472 4.63253 4.64614 4.73571 4.76078 4.78406 4.80765 4.88566 4.93299 4.93759 5.02866 5.09383 5.14137 5.20555 5.24560 5.28467 5.34917 5.36377 5.43228 5.50940 5.60861 5.70625 5.73044 5.80448 6.46020 6.55625 6.57408 7.09158 7.15785 7.19607 7.87163 8.45157 9.20649 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.002836 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.391089 B = 9869.674736 C =11253.256260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 H 0.100 0.900 4 C -0.020 4.020 5 C -0.018 4.018 6 C -0.036 4.036 7 N -0.537 5.537 8 C 0.189 3.811 9 N -0.559 5.559 10 H 0.433 0.567 11 C 0.533 3.467 12 O -0.583 6.583 13 N -0.614 5.614 14 C 0.103 3.897 15 C -0.105 4.105 16 C -0.084 4.084 17 C 0.121 3.879 18 C -0.091 4.091 19 C -0.120 4.120 20 C 0.138 3.862 21 N -0.602 5.602 22 C -0.257 4.257 23 H 0.063 0.937 24 C -0.039 4.039 25 N -0.933 5.933 26 Si 0.960 3.040 27 H -0.264 1.264 28 H -0.297 1.297 29 H -0.289 1.289 30 C 0.208 3.792 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.172 0.828 37 H 0.241 0.759 38 H 0.065 0.935 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.049 0.951 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.052 0.948 49 H 0.005 0.995 50 H 0.248 0.752 51 H 0.047 0.953 52 H -0.014 1.014 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.385 -1.900 -14.727 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 H 0.118 0.882 4 C -0.059 4.059 5 C -0.134 4.134 6 C -0.183 4.183 7 N -0.257 5.257 8 C -0.095 4.095 9 N -0.164 5.164 10 H 0.273 0.727 11 C 0.323 3.677 12 O -0.464 6.464 13 N -0.346 5.346 14 C -0.019 4.019 15 C -0.143 4.143 16 C -0.087 4.087 17 C -0.003 4.003 18 C -0.129 4.129 19 C -0.159 4.159 20 C 0.013 3.987 21 N -0.325 5.325 22 C -0.388 4.388 23 H 0.080 0.920 24 C -0.236 4.236 25 N -0.578 5.578 26 Si 0.788 3.212 27 H -0.188 1.188 28 H -0.225 1.225 29 H -0.215 1.215 30 C 0.082 3.918 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.190 0.810 37 H 0.257 0.743 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.096 0.904 48 H 0.071 0.929 49 H 0.023 0.977 50 H 0.057 0.943 51 H 0.066 0.934 52 H 0.004 0.996 Dipole moment (debyes) X Y Z Total from point charges -10.876 -2.440 -15.401 19.012 hybrid contribution 2.243 0.663 0.994 2.542 sum -8.633 -1.777 -14.408 16.890 Atomic orbital electron populations 1.21742 0.91009 1.03332 1.03153 1.21207 0.99155 1.00367 0.90346 0.88157 1.19771 1.01321 0.97802 0.87040 1.21044 0.94259 0.98824 0.99281 1.22296 0.98281 1.02702 0.95059 1.70282 1.21267 1.11467 1.22639 1.25655 0.87916 1.02275 0.93604 1.43342 1.17221 1.32254 1.23563 0.72707 1.20823 0.76253 0.86786 0.83825 1.90668 1.56502 1.15587 1.83611 1.49006 1.61283 1.09634 1.14708 1.22705 1.01928 0.79492 0.97804 1.22558 0.99493 0.99060 0.93179 1.21595 0.97749 0.95030 0.94307 1.21912 0.97047 0.97719 0.83614 1.21362 0.98453 0.97279 0.95781 1.21894 0.97410 0.98538 0.98073 1.21084 0.90868 0.95849 0.90925 1.44159 1.55932 1.10806 1.21618 1.19383 0.94760 0.85504 1.39108 0.91955 1.25934 0.95513 1.00483 1.01635 1.70162 1.04842 1.32303 1.50463 0.85328 0.77833 0.81081 0.76938 1.18830 1.22473 1.21535 1.20313 0.90935 0.91383 0.89159 0.91813 0.92003 0.90034 0.90918 0.88873 0.81045 0.74274 0.91670 0.87474 0.90086 0.90531 0.93270 0.91275 0.93215 0.91283 0.91754 0.90436 0.92942 0.97693 0.94255 0.93438 0.99606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.66 71.98 0.62 -1.64 16 2 C -0.09 -1.70 2.18 -11.54 -0.03 -1.72 16 3 H 0.10 1.67 6.86 -2.39 -0.02 1.65 16 4 C -0.02 -0.36 4.84 29.85 0.14 -0.22 16 5 C -0.02 -0.30 6.09 40.95 0.25 -0.05 16 6 C -0.04 -0.70 10.29 83.52 0.86 0.16 16 7 N -0.54 -11.31 11.25 -200.32 -2.25 -13.56 16 8 C 0.19 2.64 13.04 180.26 2.35 4.99 16 9 N -0.56 -7.06 6.15 -186.49 -1.15 -8.21 16 10 H 0.43 3.08 8.96 -92.71 -0.83 2.25 16 11 C 0.53 14.59 6.86 87.66 0.60 15.20 16 12 O -0.58 -20.18 16.73 -3.02 -0.05 -20.23 16 13 N -0.61 -17.34 3.30 -809.64 -2.67 -20.01 16 14 C 0.10 2.60 6.62 86.76 0.57 3.17 16 15 C -0.10 -3.07 5.00 31.69 0.16 -2.91 16 16 C -0.08 -2.84 0.63 -51.90 -0.03 -2.87 16 17 C 0.12 3.96 6.30 86.35 0.54 4.50 16 18 C -0.09 -2.77 4.34 30.47 0.13 -2.64 16 19 C -0.12 -3.66 5.89 30.70 0.18 -3.48 16 20 C 0.14 5.44 6.50 86.36 0.56 6.00 16 21 N -0.60 -28.14 2.46 -699.97 -1.72 -29.86 16 22 C -0.26 -13.20 9.51 84.03 0.80 -12.40 16 23 H 0.06 3.15 7.86 -2.91 -0.02 3.13 16 24 C -0.04 -2.08 4.98 84.86 0.42 -1.66 16 25 N -0.93 -53.02 11.54 21.65 0.25 -52.77 16 26 Si 0.96 42.45 29.57 68.60 2.03 44.48 16 27 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 28 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 29 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 30 C 0.21 9.29 3.58 86.14 0.31 9.59 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.03 8.13 -2.38 -0.02 1.01 16 33 H 0.08 1.24 6.68 -2.39 -0.02 1.22 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.82 8.02 -2.39 -0.02 1.80 16 36 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 37 H 0.24 1.29 8.06 -2.91 -0.02 1.26 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.11 2.00 7.06 -2.38 -0.02 1.98 16 40 H 0.08 2.07 7.63 -2.39 -0.02 2.05 16 41 H 0.08 2.66 7.48 -2.39 -0.02 2.64 16 42 H 0.05 1.79 7.67 -2.39 -0.02 1.77 16 43 H 0.07 2.29 7.56 -2.39 -0.02 2.27 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 46 H 0.06 1.92 7.13 -2.39 -0.02 1.91 16 47 H 0.08 1.96 8.14 -2.38 -0.02 1.95 16 48 H 0.05 2.03 7.93 -2.39 -0.02 2.02 16 49 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 50 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 51 H 0.05 2.38 6.58 -2.39 -0.02 2.37 16 52 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 Total: -1.00 -69.89 402.70 2.97 -66.93 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.08 Total: 19.21 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 8.45 Total: 14.03 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -7.54 Total: -124.41 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.05 Total: -20.23 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -69.89 2.97 -66.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040443104.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.607 kcal (2) G-P(sol) polarization free energy of solvation -69.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds