Wall clock time and date at job start Wed Apr 1 2020 04:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47301 * 2 1 4 4 C 1.52992 * 109.47131 * 120.00056 * 2 1 3 5 5 C 1.50701 * 109.47506 * 295.00024 * 4 2 1 6 6 O 1.21281 * 119.99685 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99982 * 179.97438 * 5 4 2 8 8 C 1.48183 * 127.80539 * 359.97438 * 7 5 4 9 9 C 1.54499 * 104.63667 * 140.70355 * 8 7 5 10 10 C 1.53818 * 104.79452 * 23.78009 * 9 8 7 11 11 C 1.48255 * 127.79726 * 179.97438 * 7 5 4 12 12 C 1.52487 * 110.24494 * 241.00959 * 10 9 8 13 13 C 1.53128 * 109.61491 * 177.89574 * 12 10 9 14 14 C 1.53185 * 109.29090 * 60.49863 * 13 12 10 15 15 N 1.46934 * 108.88687 * 304.91482 * 14 13 12 16 16 C 1.36933 * 120.68169 * 234.05373 * 15 14 13 17 17 H 1.08003 * 120.00019 * 152.57040 * 16 15 14 18 18 C 1.38816 * 119.99786 * 332.58041 * 16 15 14 19 19 N 1.31620 * 120.00108 * 159.35202 * 18 16 15 20 20 Si 1.86795 * 119.99894 * 339.34298 * 18 16 15 21 21 H 1.48504 * 109.47136 * 93.13791 * 20 18 16 22 22 H 1.48503 * 109.47346 * 213.13865 * 20 18 16 23 23 H 1.48503 * 109.47427 * 333.13587 * 20 18 16 24 24 C 1.47037 * 118.63805 * 54.02776 * 15 14 13 25 25 N 1.46498 * 109.47228 * 240.00558 * 2 1 3 26 26 C 1.34952 * 126.03626 * 324.99659 * 25 2 1 27 27 C 1.35315 * 107.74658 * 179.97438 * 26 25 2 28 28 C 1.39865 * 107.91890 * 0.02562 * 27 26 25 29 29 N 1.30835 * 108.20685 * 359.73959 * 28 27 26 30 30 H 1.09002 * 109.47087 * 59.99406 * 1 2 3 31 31 H 1.08995 * 109.47126 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47072 * 300.00081 * 1 2 3 33 33 H 1.09003 * 109.47494 * 174.99988 * 4 2 1 34 34 H 1.09004 * 109.46885 * 55.00321 * 4 2 1 35 35 H 1.09003 * 110.40327 * 21.91366 * 8 7 5 36 36 H 1.08997 * 110.40165 * 259.49322 * 8 7 5 37 37 H 1.08999 * 110.37623 * 264.95188 * 9 8 7 38 38 H 1.09003 * 110.47373 * 142.65588 * 9 8 7 39 39 H 1.09008 * 110.42391 * 100.40953 * 11 7 5 40 40 H 1.08999 * 110.43002 * 337.92512 * 11 7 5 41 41 H 1.08998 * 109.44836 * 57.85441 * 12 10 9 42 42 H 1.08996 * 109.42673 * 297.92247 * 12 10 9 43 43 H 1.09005 * 109.50489 * 300.55166 * 13 12 10 44 44 H 1.09000 * 109.53522 * 180.46414 * 13 12 10 45 45 H 1.09002 * 109.57242 * 185.08989 * 14 13 12 46 46 H 1.09000 * 109.56655 * 64.73558 * 14 13 12 47 47 H 0.96995 * 120.00114 * 180.02562 * 19 18 16 48 48 H 1.09001 * 109.58100 * 67.03775 * 24 15 14 49 49 H 1.09004 * 109.57720 * 187.44376 * 24 15 14 50 50 H 1.07997 * 126.12520 * 0.02562 * 26 25 2 51 51 H 1.08001 * 126.03594 * 179.97438 * 27 26 25 52 52 H 1.08004 * 125.89701 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 8 1.0117 1.0874 2.3633 7 7 1.9845 -0.3921 3.7001 8 6 2.7450 -1.6183 4.0373 9 6 3.6669 -1.1976 5.2036 10 6 2.9658 0.0141 5.8410 11 6 1.6862 0.2294 5.0127 12 6 3.8604 1.2461 5.7561 13 6 3.1285 2.4545 6.3468 14 6 2.7970 2.1766 7.8163 15 7 2.0378 0.9216 7.9035 16 6 0.8261 0.8807 8.5400 17 1 0.0874 0.1488 8.2485 18 6 0.5472 1.7802 9.5599 19 7 -0.7011 2.0292 9.8947 20 14 1.9436 2.6369 10.4574 21 1 2.2214 3.9434 9.8084 22 1 1.5583 2.8600 11.8742 23 1 3.1612 1.7885 10.4034 24 6 2.6057 -0.2894 7.2928 25 7 2.0183 -0.6905 -1.1962 26 6 1.4402 -1.7558 -1.7896 27 6 2.1961 -2.0921 -2.8604 28 6 3.2733 -1.2022 -2.9232 29 7 3.1650 -0.3583 -1.9292 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.1263 -0.7995 1.2056 34 1 1.6053 -1.7198 1.2950 35 1 3.3380 -1.9447 3.1829 36 1 2.0672 -2.4104 4.3554 37 1 4.6493 -0.9128 4.8271 38 1 3.7589 -2.0070 5.9279 39 1 0.8390 -0.2679 5.4853 40 1 1.4852 1.2939 4.8928 41 1 4.1060 1.4451 4.7129 42 1 4.7775 1.0676 6.3172 43 1 2.2062 2.6282 5.7922 44 1 3.7658 3.3361 6.2779 45 1 2.1975 2.9945 8.2163 46 1 3.7205 2.0852 8.3879 47 1 -0.8960 2.6580 10.6070 48 1 3.5021 -0.5870 7.8370 49 1 1.8714 -1.0942 7.3265 50 1 0.5358 -2.2507 -1.4680 51 1 2.0023 -2.9046 -3.5449 52 1 4.0571 -1.2080 -3.6663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040484035.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:25 Heat of formation + Delta-G solvation = 75.509106 kcal Electronic energy + Delta-G solvation = -31495.718532 eV Core-core repulsion = 27497.864734 eV Total energy + Delta-G solvation = -3997.853797 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.47494 -40.42018 -38.83187 -36.24866 -35.44293 -33.15152 -31.63032 -30.90799 -30.58350 -30.04513 -29.13931 -28.47420 -25.76057 -25.36162 -23.77701 -23.27930 -22.05610 -21.29285 -20.95993 -20.31820 -19.14985 -18.33549 -17.82609 -16.84221 -16.50444 -16.23611 -15.75682 -15.35435 -15.11596 -14.96635 -14.51203 -14.19379 -13.93715 -13.78732 -13.73853 -13.48934 -13.40365 -13.12223 -13.08870 -12.87720 -12.76648 -12.22845 -12.21153 -11.99609 -11.86819 -11.72389 -11.64700 -11.50573 -11.40894 -11.01360 -10.89493 -10.89282 -10.53375 -10.49046 -10.05353 -9.92770 -9.81490 -9.66616 -9.64401 -9.44522 -8.85533 -8.65772 -8.62256 -6.99860 -5.96616 -3.32872 1.65772 2.15262 2.54377 2.62378 3.01121 3.31631 3.47326 3.49786 4.15904 4.33163 4.36736 4.51531 4.57818 4.62675 4.70290 4.77205 4.85337 4.89444 5.08007 5.08955 5.13509 5.24493 5.27976 5.35747 5.38102 5.45708 5.48116 5.50392 5.58438 5.65573 5.74706 5.76951 5.84701 5.89591 5.91906 5.94265 5.99818 6.12680 6.17237 6.33714 6.34928 6.41451 6.44540 6.51570 6.57315 6.65768 6.72066 6.78687 6.94976 7.49386 7.56341 7.92820 8.09083 8.30049 8.90774 9.69879 10.07398 11.19151 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023208 B = 0.002364 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.213350 B =11841.453018 C =12155.828820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.175 3.825 3 H 0.112 0.888 4 C -0.148 4.148 5 C 0.538 3.462 6 O -0.538 6.538 7 N -0.620 5.620 8 C 0.100 3.900 9 C -0.126 4.126 10 C -0.088 4.088 11 C 0.125 3.875 12 C -0.093 4.093 13 C -0.140 4.140 14 C 0.125 3.875 15 N -0.605 5.605 16 C -0.260 4.260 17 H 0.085 0.915 18 C 0.024 3.976 19 N -0.907 5.907 20 Si 0.883 3.117 21 H -0.289 1.289 22 H -0.304 1.304 23 H -0.271 1.271 24 C 0.164 3.836 25 N -0.365 5.365 26 C 0.056 3.944 27 C -0.279 4.279 28 C 0.041 3.959 29 N -0.297 5.297 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.072 0.928 46 H 0.024 0.976 47 H 0.262 0.738 48 H 0.027 0.973 49 H 0.065 0.935 50 H 0.171 0.829 51 H 0.145 0.855 52 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.191 -10.737 -21.100 25.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.073 3.927 3 H 0.130 0.870 4 C -0.189 4.189 5 C 0.326 3.674 6 O -0.416 6.416 7 N -0.354 5.354 8 C -0.023 4.023 9 C -0.164 4.164 10 C -0.090 4.090 11 C 0.004 3.996 12 C -0.130 4.130 13 C -0.179 4.179 14 C 0.000 4.000 15 N -0.328 5.328 16 C -0.388 4.388 17 H 0.103 0.897 18 C -0.175 4.175 19 N -0.550 5.550 20 Si 0.714 3.286 21 H -0.217 1.217 22 H -0.233 1.233 23 H -0.196 1.196 24 C 0.038 3.962 25 N -0.148 5.148 26 C -0.091 4.091 27 C -0.308 4.308 28 C -0.145 4.145 29 N -0.118 5.118 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.042 0.958 47 H 0.072 0.928 48 H 0.045 0.955 49 H 0.083 0.917 50 H 0.188 0.812 51 H 0.163 0.837 52 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 8.138 -8.986 -20.421 23.748 hybrid contribution 0.461 -0.334 0.185 0.599 sum 8.599 -9.320 -20.235 23.880 Atomic orbital electron populations 1.22334 0.92000 1.03015 1.05285 1.20959 0.95394 0.96972 0.79335 0.87036 1.22025 1.03853 1.00637 0.92385 1.19720 0.79473 0.85325 0.82914 1.90717 1.40572 1.24566 1.85750 1.49125 1.54917 1.25404 1.05928 1.22454 0.94323 0.87466 0.98078 1.22564 0.98403 0.98549 0.96927 1.21643 0.94764 0.94721 0.97900 1.22471 0.96983 1.00316 0.79792 1.21345 0.97574 0.94500 0.99603 1.22113 1.00160 0.96584 0.99019 1.21334 0.95122 0.89917 0.93621 1.44361 1.21265 1.02667 1.64490 1.18862 0.89237 1.18653 1.12016 0.89749 1.25267 0.95866 0.98659 0.97696 1.69835 1.17300 1.36123 1.31715 0.86945 0.83656 0.79213 0.78774 1.21687 1.23256 1.19616 1.20913 0.96834 0.89932 0.88564 1.48990 1.19499 1.23924 1.22348 1.22529 0.99844 0.91301 0.95387 1.21507 0.99360 1.06665 1.03282 1.23893 0.99333 0.93924 0.97368 1.77405 1.03097 1.23640 1.07654 0.91592 0.92120 0.87701 0.88245 0.88464 0.90864 0.90751 0.91086 0.89965 0.90406 0.89273 0.93151 0.92362 0.91422 0.92780 0.91040 0.95791 0.92766 0.95522 0.91679 0.81161 0.83678 0.80191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 8.58 37.16 0.32 -1.25 16 2 C 0.18 1.81 3.05 -67.94 -0.21 1.60 16 3 H 0.11 1.35 7.95 -51.93 -0.41 0.94 16 4 C -0.15 -1.43 4.48 -27.89 -0.12 -1.56 16 5 C 0.54 7.11 7.63 -10.98 -0.08 7.03 16 6 O -0.54 -8.99 14.24 5.56 0.08 -8.91 16 7 N -0.62 -8.07 3.32 -169.39 -0.56 -8.63 16 8 C 0.10 0.97 6.92 -2.33 -0.02 0.96 16 9 C -0.13 -1.35 6.29 -25.52 -0.16 -1.51 16 10 C -0.09 -1.28 0.68 -154.04 -0.11 -1.39 16 11 C 0.13 2.00 5.78 -2.59 -0.01 1.99 16 12 C -0.09 -1.40 4.48 -26.93 -0.12 -1.52 16 13 C -0.14 -2.48 5.88 -26.57 -0.16 -2.63 16 14 C 0.13 2.67 4.19 -3.71 -0.02 2.66 16 15 N -0.60 -13.59 2.59 -172.56 -0.45 -14.04 16 16 C -0.26 -6.97 10.04 -15.06 -0.15 -7.13 16 17 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16 18 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 19 N -0.91 -27.50 13.97 55.49 0.78 -26.73 16 20 Si 0.88 22.19 24.35 -169.99 -4.14 18.05 16 21 H -0.29 -7.08 6.63 56.52 0.37 -6.70 16 22 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 23 H -0.27 -6.65 6.63 56.52 0.37 -6.28 16 24 C 0.16 2.92 4.90 -3.94 -0.02 2.90 16 25 N -0.37 -3.81 3.53 -54.87 -0.19 -4.00 16 26 C 0.06 0.47 10.59 -17.22 -0.18 0.29 16 27 C -0.28 -2.28 10.80 -40.01 -0.43 -2.72 16 28 C 0.04 0.38 12.02 -17.37 -0.21 0.17 16 29 N -0.30 -3.54 12.58 30.62 0.39 -3.16 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.44 7.15 -51.93 -0.37 0.07 16 32 H 0.10 1.21 5.95 -51.93 -0.31 0.90 16 33 H 0.10 0.95 7.95 -51.93 -0.41 0.53 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.56 7.31 -51.93 -0.38 0.18 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.71 7.70 -51.93 -0.40 0.31 16 38 H 0.08 0.79 7.70 -51.93 -0.40 0.39 16 39 H 0.08 1.36 7.73 -51.92 -0.40 0.96 16 40 H 0.09 1.68 5.62 -51.93 -0.29 1.39 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.29 6.19 -51.93 -0.32 0.97 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.07 1.70 4.47 -51.93 -0.23 1.47 16 46 H 0.02 0.51 7.10 -51.93 -0.37 0.14 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 48 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.06 1.15 7.77 -51.93 -0.40 0.74 16 50 H 0.17 0.94 7.26 -52.49 -0.38 0.56 16 51 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 52 H 0.18 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 393.83 15.07 5.93 5.93 Total: -1.00 -33.07 393.83 -8.44 -41.51 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -8.50 Total: 1.47 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.77 Total: -1.50 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.04 Total: -56.56 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.14 Total: 18.05 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.07 -8.44 -41.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040484035.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.021 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds