Wall clock time and date at job start Wed Apr 1 2020 04:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46936 * 2 1 4 4 C 1.52995 * 109.47179 * 240.00121 * 2 1 3 5 5 C 1.50702 * 109.47447 * 65.00129 * 4 2 1 6 6 O 1.21275 * 119.99982 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99896 * 180.02562 * 5 4 2 8 8 C 1.47491 * 125.66148 * 359.68894 * 7 5 4 9 9 C 1.55258 * 104.78400 * 155.91161 * 8 7 5 10 10 C 1.54513 * 101.42410 * 36.65722 * 9 8 7 11 11 C 1.47188 * 125.65882 * 179.97438 * 7 5 4 12 12 C 1.52233 * 110.24614 * 206.41261 * 10 9 8 13 13 C 1.53175 * 109.64337 * 297.11756 * 12 10 9 14 14 C 1.53177 * 109.27777 * 299.82705 * 13 12 10 15 15 N 1.46940 * 108.93248 * 55.21725 * 14 13 12 16 16 C 1.36935 * 120.70856 * 125.86209 * 15 14 13 17 17 H 1.08004 * 119.99953 * 332.22478 * 16 15 14 18 18 C 1.38809 * 120.00474 * 152.22832 * 16 15 14 19 19 N 1.31619 * 119.99964 * 343.23930 * 18 16 15 20 20 Si 1.86795 * 120.00164 * 163.23958 * 18 16 15 21 21 H 1.48498 * 109.47265 * 60.00100 * 20 18 16 22 22 H 1.48506 * 109.47162 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47152 * 299.99732 * 20 18 16 24 24 C 1.47081 * 118.58934 * 305.83552 * 15 14 13 25 25 N 1.46500 * 109.46995 * 119.99852 * 2 1 3 26 26 C 1.34944 * 126.03729 * 34.99718 * 25 2 1 27 27 C 1.35320 * 107.74592 * 179.97438 * 26 25 2 28 28 C 1.39868 * 107.91976 * 0.02562 * 27 26 25 29 29 N 1.30840 * 108.20267 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47624 * 300.00410 * 1 2 3 31 31 H 1.09008 * 109.47046 * 60.00504 * 1 2 3 32 32 H 1.08993 * 109.47195 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.47155 * 185.00171 * 4 2 1 34 34 H 1.08998 * 109.46842 * 304.99607 * 4 2 1 35 35 H 1.08993 * 110.34934 * 274.86101 * 8 7 5 36 36 H 1.08996 * 110.35463 * 37.15357 * 8 7 5 37 37 H 1.09001 * 111.21979 * 278.56800 * 9 8 7 38 38 H 1.09001 * 110.94153 * 154.62646 * 9 8 7 39 39 H 1.08998 * 109.91618 * 300.86245 * 11 7 5 40 40 H 1.09001 * 109.90923 * 62.13688 * 11 7 5 41 41 H 1.09005 * 109.44201 * 57.16759 * 12 10 9 42 42 H 1.08990 * 109.44497 * 177.06298 * 12 10 9 43 43 H 1.09003 * 109.49921 * 179.89485 * 13 12 10 44 44 H 1.08998 * 109.53845 * 59.79464 * 13 12 10 45 45 H 1.09002 * 109.56570 * 295.38386 * 14 13 12 46 46 H 1.08996 * 109.56215 * 175.04761 * 14 13 12 47 47 H 0.96995 * 120.00355 * 180.02562 * 19 18 16 48 48 H 1.09004 * 109.58116 * 292.67128 * 24 15 14 49 49 H 1.08993 * 109.58411 * 172.26627 * 24 15 14 50 50 H 1.08000 * 126.12390 * 359.97438 * 26 25 2 51 51 H 1.08001 * 126.03693 * 180.02562 * 27 26 25 52 52 H 1.07994 * 125.90057 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 8 1.0110 1.0869 -2.3634 7 7 1.9845 -0.3919 -3.7001 8 6 2.7512 -1.6201 -3.9816 9 6 2.3533 -2.0123 -5.4301 10 6 2.2210 -0.6250 -6.0975 11 6 1.6615 0.2651 -4.9770 12 6 1.2499 -0.6938 -7.2678 13 6 1.7981 -1.6443 -8.3366 14 6 3.1514 -1.1236 -8.8303 15 7 4.0458 -0.9521 -7.6770 16 6 5.2786 -1.5475 -7.6536 17 1 5.4476 -2.4613 -8.2039 18 6 6.3114 -0.9767 -6.9225 19 7 6.2247 0.2762 -6.5289 20 14 7.8241 -1.9868 -6.4973 21 1 8.4807 -2.4453 -7.7478 22 1 8.7734 -1.1523 -5.7176 23 1 7.4211 -3.1654 -5.6888 24 6 3.5888 -0.1267 -6.5486 25 7 2.0183 -0.6906 1.1962 26 6 1.4401 -1.7558 1.7895 27 6 2.1967 -2.0929 2.8596 28 6 3.2738 -1.2028 2.9227 29 7 3.1680 -0.3619 1.9259 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1264 -0.7994 -1.2055 34 1 1.6054 -1.7197 -1.2951 35 1 3.8211 -1.4214 -3.9203 36 1 2.4708 -2.4100 -3.2849 37 1 1.4033 -2.5465 -5.4474 38 1 3.1390 -2.6007 -5.9042 39 1 0.5808 0.3599 -5.0828 40 1 2.1287 1.2491 -5.0167 41 1 0.2848 -1.0598 -6.9174 42 1 1.1265 0.3009 -7.6958 43 1 1.1002 -1.6932 -9.1725 44 1 1.9247 -2.6390 -7.9094 45 1 3.0133 -0.1651 -9.3306 46 1 3.5867 -1.8409 -9.5260 47 1 6.9465 0.6753 -6.0183 48 1 3.5126 0.9138 -6.8644 49 1 4.2977 -0.2095 -5.7249 50 1 0.5356 -2.2506 1.4679 51 1 2.0030 -2.9056 3.5440 52 1 4.0578 -1.2091 3.6653 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040484037.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:32 Heat of formation + Delta-G solvation = 48.353886 kcal Electronic energy + Delta-G solvation = -31685.525621 eV Core-core repulsion = 27686.494285 eV Total energy + Delta-G solvation = -3999.031336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.19303 -41.51828 -39.99765 -37.37884 -36.29666 -34.94303 -32.99977 -31.76432 -31.29945 -30.74207 -30.43937 -29.21358 -27.34293 -26.68752 -24.53750 -23.99043 -23.77522 -22.22718 -21.96988 -21.00046 -20.25095 -19.62384 -18.68680 -18.34401 -17.48111 -17.26681 -16.99280 -16.66364 -15.83118 -15.79975 -15.60615 -15.52779 -15.28397 -14.99742 -14.73155 -14.54766 -14.32303 -14.12975 -13.90188 -13.81284 -13.56271 -13.49205 -13.47792 -13.22323 -12.94623 -12.84580 -12.67003 -12.58169 -12.50099 -12.35429 -12.25784 -12.17622 -11.83271 -11.63447 -11.57962 -11.31498 -11.21208 -11.01937 -10.92822 -10.51293 -10.41113 -9.71592 -9.51843 -8.65437 -7.85935 -5.30348 0.99048 1.41798 1.46352 1.47681 1.47895 1.54339 1.99138 2.05683 2.51203 3.25972 3.34164 3.43814 3.58864 3.66553 3.67847 3.89018 3.97018 3.98478 4.05966 4.12992 4.28529 4.31416 4.37326 4.39339 4.43054 4.47642 4.60796 4.62858 4.72617 4.76266 4.78281 4.81577 4.82245 4.95380 4.96168 5.01681 5.06533 5.14205 5.18224 5.19772 5.21304 5.29906 5.38926 5.40777 5.48799 5.62215 5.68518 5.76869 5.77457 6.16004 6.39522 6.46244 6.81511 7.01021 7.16189 7.88581 8.40868 9.19658 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011553 B = 0.003061 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.942579 B = 9146.559354 C =10770.065841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.179 3.821 3 H 0.080 0.920 4 C -0.137 4.137 5 C 0.532 3.468 6 O -0.574 6.574 7 N -0.610 5.610 8 C 0.101 3.899 9 C -0.102 4.102 10 C -0.085 4.085 11 C 0.126 3.874 12 C -0.090 4.090 13 C -0.120 4.120 14 C 0.135 3.865 15 N -0.604 5.604 16 C -0.252 4.252 17 H 0.069 0.931 18 C -0.047 4.047 19 N -0.936 5.936 20 Si 0.956 3.044 21 H -0.277 1.277 22 H -0.302 1.302 23 H -0.272 1.272 24 C 0.202 3.798 25 N -0.375 5.375 26 C 0.057 3.943 27 C -0.283 4.283 28 C 0.036 3.964 29 N -0.351 5.351 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.046 0.954 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.038 0.962 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.006 0.994 46 H 0.053 0.947 47 H 0.245 0.755 48 H -0.022 1.022 49 H 0.056 0.944 50 H 0.206 0.794 51 H 0.171 0.829 52 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.155 -9.312 12.723 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.076 3.924 3 H 0.099 0.901 4 C -0.177 4.177 5 C 0.321 3.679 6 O -0.455 6.455 7 N -0.342 5.342 8 C -0.021 4.021 9 C -0.139 4.139 10 C -0.088 4.088 11 C 0.002 3.998 12 C -0.128 4.128 13 C -0.159 4.159 14 C 0.010 3.990 15 N -0.327 5.327 16 C -0.382 4.382 17 H 0.087 0.913 18 C -0.242 4.242 19 N -0.582 5.582 20 Si 0.785 3.215 21 H -0.203 1.203 22 H -0.229 1.229 23 H -0.198 1.198 24 C 0.076 3.924 25 N -0.158 5.158 26 C -0.089 4.089 27 C -0.312 4.312 28 C -0.150 4.150 29 N -0.172 5.172 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.147 0.853 35 H 0.065 0.935 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.024 0.976 46 H 0.071 0.929 47 H 0.055 0.945 48 H -0.004 1.004 49 H 0.074 0.926 50 H 0.222 0.778 51 H 0.189 0.811 52 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -14.897 -7.587 12.203 20.698 hybrid contribution 1.439 -0.203 0.372 1.500 sum -13.458 -7.790 12.575 19.998 Atomic orbital electron populations 1.22220 0.90408 1.04508 1.04296 1.20820 0.96409 0.95536 0.79605 0.90146 1.21966 1.03619 1.01480 0.90673 1.20281 0.78779 0.85109 0.83716 1.90657 1.42501 1.25883 1.86434 1.48630 1.54252 1.25917 1.05384 1.22535 0.94958 0.86027 0.98621 1.22657 1.02686 0.95991 0.92605 1.21614 0.97088 0.95657 0.94406 1.21841 1.00098 0.95478 0.82347 1.21271 0.97313 0.99674 0.94550 1.21891 0.96332 0.99043 0.98583 1.21120 0.91332 0.97148 0.89407 1.44284 1.14673 1.58311 1.15415 1.19426 0.87509 1.03029 1.28223 0.91312 1.25684 0.99886 0.95786 1.02829 1.70187 1.33652 1.12249 1.42132 0.85510 0.79706 0.78244 0.78075 1.20290 1.22926 1.19765 1.20346 0.91585 0.89917 0.90585 1.48960 1.19366 1.24928 1.22541 1.23147 1.00598 0.90233 0.94925 1.21890 0.98727 1.06862 1.03752 1.24425 1.00159 0.93540 0.96848 1.77389 1.04565 1.25986 1.09300 0.91386 0.89598 0.89311 0.89113 0.85294 0.93512 0.87548 0.88637 0.90428 0.90086 0.94348 0.89886 0.93095 0.90011 0.91556 0.97649 0.92851 0.94546 1.00382 0.92584 0.77771 0.81108 0.78122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 8.57 71.98 0.62 -2.13 16 2 C 0.18 4.04 3.05 44.99 0.14 4.18 16 3 H 0.08 2.29 7.96 -2.38 -0.02 2.27 16 4 C -0.14 -3.05 4.50 29.85 0.13 -2.91 16 5 C 0.53 15.45 7.57 87.66 0.66 16.11 16 6 O -0.57 -19.81 14.29 -3.01 -0.04 -19.85 16 7 N -0.61 -18.24 3.33 -811.85 -2.70 -20.95 16 8 C 0.10 2.80 6.38 86.97 0.55 3.35 16 9 C -0.10 -2.91 4.91 31.88 0.16 -2.76 16 10 C -0.09 -2.84 0.56 -51.90 -0.03 -2.87 16 11 C 0.13 4.08 6.05 86.47 0.52 4.60 16 12 C -0.09 -2.54 4.53 30.40 0.14 -2.40 16 13 C -0.12 -3.42 5.90 30.71 0.18 -3.24 16 14 C 0.14 5.22 6.49 86.35 0.56 5.78 16 15 N -0.60 -28.42 2.53 -700.22 -1.77 -30.19 16 16 C -0.25 -13.10 9.59 84.03 0.81 -12.29 16 17 H 0.07 3.47 7.88 -2.91 -0.02 3.45 16 18 C -0.05 -2.52 4.93 84.86 0.42 -2.11 16 19 N -0.94 -54.97 11.18 21.65 0.24 -54.73 16 20 Si 0.96 43.80 29.59 68.60 2.03 45.83 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 C 0.20 9.23 3.81 86.07 0.33 9.56 16 25 N -0.38 -8.47 3.53 -327.49 -1.15 -9.62 16 26 C 0.06 0.92 10.59 83.54 0.88 1.80 16 27 C -0.28 -4.62 10.80 21.99 0.24 -4.38 16 28 C 0.04 0.73 12.03 85.24 1.02 1.76 16 29 N -0.35 -9.55 12.58 -57.03 -0.72 -10.26 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.87 5.95 -2.38 -0.01 1.86 16 32 H 0.09 1.02 7.16 -2.39 -0.02 1.00 16 33 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.13 2.04 7.85 -2.39 -0.02 2.02 16 35 H 0.05 1.60 7.64 -2.39 -0.02 1.58 16 36 H 0.11 2.12 7.48 -2.39 -0.02 2.11 16 37 H 0.10 2.14 8.01 -2.39 -0.02 2.12 16 38 H 0.08 2.64 7.58 -2.39 -0.02 2.63 16 39 H 0.08 2.35 7.79 -2.39 -0.02 2.33 16 40 H 0.04 1.47 7.80 -2.39 -0.02 1.45 16 41 H 0.08 1.84 8.11 -2.38 -0.02 1.82 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.07 1.85 7.31 -2.39 -0.02 1.84 16 45 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 47 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 48 H -0.02 -1.15 8.11 -2.38 -0.02 -1.16 16 49 H 0.06 2.95 5.28 -2.39 -0.01 2.93 16 50 H 0.21 1.68 7.26 -2.91 -0.02 1.66 16 51 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 52 H 0.20 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -71.27 400.86 4.11 -67.16 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.89 Total: 20.56 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 7.34 Total: 12.07 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -6.10 Total: -125.75 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.04 Total: -19.85 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -71.27 4.11 -67.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040484037.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.510 kcal (2) G-P(sol) polarization free energy of solvation -71.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds