Wall clock time and date at job start Wed Apr 1 2020 04:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47422 * 2 1 4 4 C 1.53009 * 109.47184 * 119.99990 * 2 1 3 5 5 C 1.50699 * 109.46985 * 294.99884 * 4 2 1 6 6 O 1.21286 * 119.99991 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99848 * 179.97438 * 5 4 2 8 8 C 1.48210 * 127.05149 * 359.96510 * 7 5 4 9 9 C 1.55038 * 103.33327 * 219.00558 * 8 7 5 10 10 C 1.54178 * 102.72473 * 323.00890 * 9 8 7 11 11 C 1.47610 * 127.02237 * 179.97438 * 7 5 4 12 12 C 1.52501 * 110.00806 * 140.67896 * 10 9 8 13 13 C 1.53131 * 109.59875 * 61.56937 * 12 10 9 14 14 C 1.53193 * 109.29259 * 60.51054 * 13 12 10 15 15 N 1.46920 * 108.89106 * 304.93686 * 14 13 12 16 16 C 1.36942 * 120.67471 * 234.03046 * 15 14 13 17 17 H 1.08001 * 119.99968 * 27.37591 * 16 15 14 18 18 C 1.38817 * 119.99989 * 207.37277 * 16 15 14 19 19 N 1.31611 * 119.99984 * 17.23178 * 18 16 15 20 20 Si 1.86795 * 119.99858 * 197.23361 * 18 16 15 21 21 H 1.48505 * 109.47151 * 90.00051 * 20 18 16 22 22 H 1.48501 * 109.47286 * 210.00036 * 20 18 16 23 23 H 1.48501 * 109.47218 * 330.00014 * 20 18 16 24 24 C 1.47034 * 118.64579 * 54.01638 * 15 14 13 25 25 N 1.46499 * 109.47309 * 239.99795 * 2 1 3 26 26 C 1.34950 * 126.03624 * 325.00297 * 25 2 1 27 27 C 1.35315 * 107.74473 * 179.97438 * 26 25 2 28 28 C 1.39874 * 107.92171 * 359.97438 * 27 26 25 29 29 N 1.30833 * 108.20142 * 359.74176 * 28 27 26 30 30 H 1.08999 * 109.46902 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46928 * 299.99916 * 1 2 3 32 32 H 1.08991 * 109.46756 * 59.99788 * 1 2 3 33 33 H 1.08997 * 109.47069 * 174.99895 * 4 2 1 34 34 H 1.09001 * 109.46568 * 54.99729 * 4 2 1 35 35 H 1.09009 * 110.62527 * 100.55270 * 8 7 5 36 36 H 1.09002 * 110.80069 * 337.54763 * 8 7 5 37 37 H 1.09002 * 110.75856 * 204.70308 * 9 8 7 38 38 H 1.09003 * 110.75692 * 81.32479 * 9 8 7 39 39 H 1.08991 * 109.97228 * 35.28867 * 11 7 5 40 40 H 1.09006 * 109.97474 * 274.05120 * 11 7 5 41 41 H 1.08997 * 109.44485 * 181.60710 * 12 10 9 42 42 H 1.08994 * 109.45368 * 301.55692 * 12 10 9 43 43 H 1.09004 * 109.49675 * 180.44977 * 13 12 10 44 44 H 1.09000 * 109.50365 * 300.52447 * 13 12 10 45 45 H 1.09005 * 109.56640 * 64.75655 * 14 13 12 46 46 H 1.08998 * 109.56916 * 184.99030 * 14 13 12 47 47 H 0.97002 * 120.00018 * 179.97438 * 19 18 16 48 48 H 1.09004 * 109.58154 * 187.42103 * 24 15 14 49 49 H 1.08998 * 109.58636 * 67.00465 * 24 15 14 50 50 H 1.07997 * 126.12739 * 359.95512 * 26 25 2 51 51 H 1.08002 * 126.04229 * 180.02562 * 27 26 25 52 52 H 1.07997 * 125.89574 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 8 1.0110 1.0870 2.3633 7 7 1.9845 -0.3919 3.7002 8 6 2.7465 -1.6227 4.0186 9 6 2.0375 -2.1641 5.2866 10 6 1.6792 -0.8746 6.0521 11 6 1.6781 0.2418 4.9977 12 6 0.2982 -1.0101 6.6848 13 6 0.3045 -2.1660 7.6891 14 6 1.3323 -1.8767 8.7875 15 7 2.6381 -1.6252 8.1628 16 6 3.7438 -2.3376 8.5442 17 1 3.6325 -3.3354 8.9421 18 6 5.0076 -1.7771 8.4192 19 7 5.1385 -0.4766 8.2651 20 14 6.5225 -2.8687 8.4697 21 1 6.8566 -3.3159 7.0936 22 1 7.6647 -2.1048 9.0329 23 1 6.2508 -4.0535 9.3229 24 6 2.7335 -0.5934 7.1197 25 7 2.0184 -0.6906 -1.1961 26 6 1.4402 -1.7559 -1.7894 27 6 2.1962 -2.0923 -2.8601 28 6 3.2729 -1.2018 -2.9236 29 7 3.1641 -0.3575 -1.9301 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8899 33 1 3.1263 -0.7995 1.2056 34 1 1.6054 -1.7198 1.2952 35 1 3.7884 -1.3846 4.2329 36 1 2.6778 -2.3423 3.2028 37 1 2.7148 -2.7856 5.8724 38 1 1.1373 -2.7177 5.0193 39 1 0.6973 0.7156 4.9581 40 1 2.4400 0.9829 5.2393 41 1 0.0423 -0.0838 7.1992 42 1 -0.4393 -1.2093 5.9074 43 1 -0.6854 -2.2665 8.1344 44 1 0.5688 -3.0914 7.1773 45 1 1.0236 -0.9981 9.3542 46 1 1.4044 -2.7350 9.4554 47 1 6.0216 -0.0849 8.1781 48 1 3.7257 -0.6200 6.6691 49 1 2.5557 0.3880 7.5592 50 1 0.5363 -2.2514 -1.4673 51 1 2.0021 -2.9044 -3.5452 52 1 4.0565 -1.2076 -3.6669 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040484040.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:40 Heat of formation + Delta-G solvation = 50.471119 kcal Electronic energy + Delta-G solvation = -31525.969324 eV Core-core repulsion = 27527.029798 eV Total energy + Delta-G solvation = -3998.939526 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.17720 -41.46956 -39.98329 -37.39143 -36.28555 -34.89657 -32.96437 -31.76318 -31.28803 -30.72765 -30.46341 -29.22794 -27.28064 -26.66287 -24.51023 -24.01432 -23.83872 -22.20123 -21.95788 -20.99368 -20.24210 -19.58081 -18.70170 -18.30846 -17.45627 -17.22896 -16.96909 -16.64359 -15.83930 -15.76581 -15.66262 -15.54083 -15.27685 -14.96755 -14.67841 -14.53384 -14.34251 -14.19167 -13.95182 -13.82937 -13.61609 -13.46244 -13.34528 -13.12087 -12.89692 -12.80273 -12.70507 -12.53126 -12.47239 -12.36260 -12.24347 -12.12296 -11.82184 -11.64780 -11.57732 -11.33373 -11.20176 -11.01821 -10.93668 -10.50481 -10.39711 -9.76361 -9.50924 -8.64755 -7.84590 -5.28503 0.99634 1.41296 1.47725 1.48986 1.50007 1.57735 1.99782 2.03028 2.53013 3.28093 3.34988 3.45334 3.59611 3.67041 3.73456 3.86433 3.98302 3.99628 4.07601 4.13930 4.27416 4.31488 4.37669 4.39789 4.44498 4.49446 4.61073 4.63221 4.72923 4.76103 4.78550 4.79549 4.83114 4.93736 4.95130 4.96973 5.04343 5.14475 5.18974 5.20189 5.21912 5.30180 5.36101 5.42690 5.51736 5.63546 5.69537 5.77344 5.78617 6.16333 6.41213 6.49603 6.82178 7.01240 7.17673 7.89506 8.41763 9.21373 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013377 B = 0.002715 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.657048 B =10311.185380 C =11501.817499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.179 3.821 3 H 0.083 0.917 4 C -0.136 4.136 5 C 0.537 3.463 6 O -0.574 6.574 7 N -0.612 5.612 8 C 0.101 3.899 9 C -0.104 4.104 10 C -0.084 4.084 11 C 0.123 3.877 12 C -0.090 4.090 13 C -0.120 4.120 14 C 0.137 3.863 15 N -0.604 5.604 16 C -0.251 4.251 17 H 0.068 0.932 18 C -0.047 4.047 19 N -0.935 5.935 20 Si 0.958 3.042 21 H -0.282 1.282 22 H -0.303 1.303 23 H -0.269 1.269 24 C 0.200 3.800 25 N -0.375 5.375 26 C 0.056 3.944 27 C -0.284 4.284 28 C 0.036 3.964 29 N -0.348 5.348 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.058 0.942 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.049 0.951 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.006 0.994 46 H 0.053 0.947 47 H 0.247 0.753 48 H 0.057 0.943 49 H -0.016 1.016 50 H 0.203 0.797 51 H 0.170 0.830 52 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.367 -6.766 -18.639 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.077 3.923 3 H 0.101 0.899 4 C -0.177 4.177 5 C 0.326 3.674 6 O -0.455 6.455 7 N -0.345 5.345 8 C -0.021 4.021 9 C -0.142 4.142 10 C -0.087 4.087 11 C -0.001 4.001 12 C -0.128 4.128 13 C -0.159 4.159 14 C 0.011 3.989 15 N -0.327 5.327 16 C -0.381 4.381 17 H 0.086 0.914 18 C -0.243 4.243 19 N -0.582 5.582 20 Si 0.787 3.213 21 H -0.209 1.209 22 H -0.230 1.230 23 H -0.194 1.194 24 C 0.074 3.926 25 N -0.158 5.158 26 C -0.090 4.090 27 C -0.313 4.313 28 C -0.149 4.149 29 N -0.170 5.170 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.145 0.855 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.024 0.976 46 H 0.071 0.929 47 H 0.056 0.944 48 H 0.076 0.924 49 H 0.002 0.998 50 H 0.220 0.780 51 H 0.188 0.812 52 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.109 -5.038 -18.063 21.796 hybrid contribution 1.201 -0.402 0.250 1.291 sum -9.909 -5.440 -17.814 21.097 Atomic orbital electron populations 1.22229 0.90738 1.04406 1.04240 1.20815 0.96208 0.95662 0.79643 0.89856 1.21960 1.03960 1.01338 0.90393 1.20281 0.78564 0.85060 0.83474 1.90671 1.42458 1.26068 1.86327 1.48927 1.54435 1.26050 1.05062 1.22724 0.95013 0.85615 0.98769 1.22562 1.00877 0.96326 0.94429 1.21607 0.97619 0.94716 0.94738 1.21914 1.00619 0.95450 0.82068 1.21369 0.94511 0.98639 0.98295 1.21897 0.98810 0.98269 0.96939 1.21091 0.85934 0.97572 0.94256 1.44271 1.04632 1.43010 1.40739 1.19461 0.85328 0.95704 1.37610 0.91403 1.25681 1.00463 0.96072 1.02067 1.70186 1.22172 1.10376 1.55440 0.85396 0.79523 0.78460 0.77885 1.20908 1.22975 1.19378 1.20454 0.96328 0.88514 0.87314 1.48956 1.19634 1.24757 1.22428 1.23124 1.00533 0.90370 0.94944 1.21886 0.98734 1.06941 1.03708 1.24421 1.00108 0.93421 0.96957 1.77372 1.04700 1.25671 1.09217 0.89492 0.89667 0.91459 0.88444 0.85488 0.92341 0.87183 0.90744 0.89482 0.90645 0.93694 0.93185 0.90845 0.90247 0.91658 0.97563 0.92857 0.94394 0.92421 0.99818 0.77977 0.81245 0.78065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 8.58 71.98 0.62 -2.00 16 2 C 0.18 3.69 3.05 45.00 0.14 3.82 16 3 H 0.08 2.16 7.96 -2.39 -0.02 2.14 16 4 C -0.14 -2.69 4.44 29.85 0.13 -2.55 16 5 C 0.54 14.43 7.61 87.66 0.67 15.09 16 6 O -0.57 -18.79 14.31 -3.05 -0.04 -18.83 16 7 N -0.61 -17.26 3.30 -809.48 -2.67 -19.94 16 8 C 0.10 2.62 6.95 86.75 0.60 3.22 16 9 C -0.10 -3.02 5.00 31.69 0.16 -2.86 16 10 C -0.08 -2.81 0.63 -51.87 -0.03 -2.85 16 11 C 0.12 4.00 6.28 86.36 0.54 4.55 16 12 C -0.09 -2.64 4.34 30.47 0.13 -2.50 16 13 C -0.12 -3.52 5.88 30.70 0.18 -3.34 16 14 C 0.14 5.28 6.50 86.36 0.56 5.84 16 15 N -0.60 -28.18 2.50 -699.86 -1.75 -29.94 16 16 C -0.25 -12.94 9.59 84.03 0.81 -12.13 16 17 H 0.07 3.42 7.89 -2.91 -0.02 3.40 16 18 C -0.05 -2.54 4.92 84.86 0.42 -2.12 16 19 N -0.94 -53.90 11.18 21.65 0.24 -53.65 16 20 Si 0.96 43.23 29.59 68.60 2.03 45.26 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 C 0.20 9.01 3.65 86.16 0.31 9.33 16 25 N -0.38 -7.75 3.53 -327.48 -1.15 -8.91 16 26 C 0.06 0.84 10.59 83.54 0.88 1.72 16 27 C -0.28 -4.25 10.80 21.99 0.24 -4.01 16 28 C 0.04 0.68 12.03 85.24 1.03 1.70 16 29 N -0.35 -8.68 12.58 -57.02 -0.72 -9.39 16 30 H 0.09 0.95 7.16 -2.39 -0.02 0.94 16 31 H 0.08 1.79 5.95 -2.38 -0.01 1.77 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.13 1.79 7.91 -2.39 -0.02 1.77 16 35 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.11 2.04 7.25 -2.39 -0.02 2.02 16 37 H 0.07 2.61 7.48 -2.39 -0.02 2.60 16 38 H 0.09 2.10 7.62 -2.39 -0.02 2.08 16 39 H 0.08 2.39 7.60 -2.39 -0.02 2.37 16 40 H 0.04 1.67 7.68 -2.38 -0.02 1.66 16 41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 44 H 0.06 1.87 7.13 -2.39 -0.02 1.86 16 45 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 46 H 0.05 2.02 7.94 -2.39 -0.02 2.00 16 47 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 48 H 0.06 2.97 6.06 -2.38 -0.01 2.96 16 49 H -0.02 -0.83 8.14 -2.39 -0.02 -0.84 16 50 H 0.20 1.51 7.26 -2.91 -0.02 1.49 16 51 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 52 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -68.93 401.54 4.21 -64.72 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.89 Total: 19.77 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 7.38 Total: 10.91 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -6.05 Total: -121.82 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.04 Total: -18.83 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -68.93 4.21 -64.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040484040.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.191 kcal (2) G-P(sol) polarization free energy of solvation -68.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds