Wall clock time and date at job start Wed Apr 1 2020 04:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46574 * 2 1 4 4 C 1.50698 * 109.47262 * 119.99393 * 2 1 3 5 5 O 1.21281 * 120.00231 * 120.00223 * 4 2 1 6 6 N 1.34775 * 120.00435 * 300.00160 * 4 2 1 7 7 C 1.47489 * 125.65937 * 359.97438 * 6 4 2 8 8 C 1.55036 * 104.90415 * 204.02880 * 7 6 4 9 9 C 1.54492 * 101.53294 * 323.65249 * 8 7 6 10 10 C 1.47186 * 125.66926 * 179.97438 * 6 4 2 11 11 C 1.52222 * 110.29288 * 153.33997 * 9 8 7 12 12 C 1.53155 * 109.71031 * 63.16217 * 11 9 8 13 13 C 1.53189 * 109.28230 * 60.15489 * 12 11 9 14 14 N 1.46942 * 108.87721 * 304.70716 * 13 12 11 15 15 C 1.36927 * 120.70646 * 234.25983 * 14 13 12 16 16 H 1.08001 * 120.00181 * 27.24954 * 15 14 13 17 17 C 1.38820 * 120.00109 * 207.24869 * 15 14 13 18 18 N 1.31613 * 119.99771 * 17.18663 * 17 15 14 19 19 Si 1.86801 * 119.99834 * 197.18972 * 17 15 14 20 20 H 1.48500 * 109.46838 * 90.00014 * 19 17 15 21 21 H 1.48503 * 109.47056 * 209.99816 * 19 17 15 22 22 H 1.48496 * 109.47414 * 329.99840 * 19 17 15 23 23 C 1.47072 * 118.59210 * 54.23663 * 14 13 12 24 24 C 1.50694 * 109.47328 * 239.99828 * 2 1 3 25 25 C 1.39874 * 126.03943 * 300.01841 * 24 2 1 26 26 N 1.30838 * 108.20174 * 179.97438 * 25 24 2 27 27 N 1.40093 * 108.20627 * 0.02562 * 26 25 24 28 28 C 1.46496 * 126.03334 * 179.97438 * 27 26 25 29 29 C 1.34951 * 107.92195 * 359.75706 * 27 26 25 30 30 H 1.08990 * 109.47257 * 60.00701 * 1 2 3 31 31 H 1.09007 * 109.46451 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47080 * 299.99974 * 1 2 3 33 33 H 1.08997 * 110.35639 * 322.88349 * 7 6 4 34 34 H 1.09000 * 110.35684 * 85.06737 * 7 6 4 35 35 H 1.09006 * 111.01227 * 81.70936 * 8 7 6 36 36 H 1.08992 * 111.01335 * 205.58682 * 8 7 6 37 37 H 1.08998 * 109.90680 * 297.82387 * 10 6 4 38 38 H 1.08999 * 109.90473 * 59.08185 * 10 6 4 39 39 H 1.09004 * 109.43645 * 183.23521 * 11 9 8 40 40 H 1.09007 * 109.43440 * 303.13516 * 11 9 8 41 41 H 1.09002 * 109.50298 * 180.09451 * 12 11 9 42 42 H 1.09000 * 109.50023 * 300.17440 * 12 11 9 43 43 H 1.08998 * 109.57415 * 64.53061 * 13 12 11 44 44 H 1.09005 * 109.56874 * 184.77123 * 13 12 11 45 45 H 0.96999 * 119.99752 * 179.97438 * 18 17 15 46 46 H 1.08996 * 109.57520 * 187.74301 * 23 14 13 47 47 H 1.09006 * 109.57023 * 67.37944 * 23 14 13 48 48 H 1.07992 * 125.89834 * 0.02562 * 25 24 2 49 49 H 1.08997 * 109.46927 * 90.03237 * 28 27 26 50 50 H 1.09009 * 109.46706 * 210.02362 * 28 27 26 51 51 H 1.08992 * 109.47651 * 330.02319 * 28 27 26 52 52 H 1.07998 * 126.12266 * 180.24083 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7297 -1.6963 1.1194 6 7 1.7068 -0.2498 2.4546 7 6 0.8711 0.9329 2.7341 8 6 1.2929 1.3929 4.1533 9 6 1.5508 0.0396 4.8526 10 6 2.1262 -0.8435 3.7344 11 6 2.5618 0.2109 5.9776 12 6 1.9911 1.1472 7.0469 13 6 0.7016 0.5434 7.6119 14 7 -0.2255 0.2793 6.5028 15 6 -1.4974 0.7860 6.5190 16 1 -1.7096 1.6953 7.0617 17 6 -2.5143 0.1309 5.8378 18 7 -2.3572 -1.1222 5.4675 19 14 -4.1054 1.0281 5.4468 20 1 -3.9862 1.6936 4.1246 21 1 -5.2267 0.0551 5.4120 22 1 -4.3681 2.0489 6.4929 23 6 0.2420 -0.5405 5.3748 24 6 2.0324 -0.7104 -1.2304 25 6 1.7732 -2.0408 -1.5759 26 7 2.3770 -2.2938 -2.7088 27 7 3.0410 -1.1309 -3.1202 28 6 3.8407 -0.9803 -4.3384 29 6 2.8097 -0.1725 -2.1986 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.0709 1.7190 2.0059 34 1 -0.1848 0.6631 2.7196 35 1 2.2023 1.9928 4.1156 36 1 0.4865 1.9385 4.6431 37 1 1.7317 -1.8560 3.8208 38 1 3.2142 -0.8598 3.7972 39 1 2.7765 -0.7603 6.4234 40 1 3.4816 0.6372 5.5769 41 1 2.7182 1.2688 7.8498 42 1 1.7743 2.1184 6.6020 43 1 0.9303 -0.3897 8.1267 44 1 0.2463 1.2443 8.3117 45 1 -3.0679 -1.5801 4.9919 46 1 -0.5049 -0.5292 4.5810 47 1 0.4049 -1.5647 5.7105 48 1 1.1771 -2.7383 -1.0065 49 1 3.2002 -0.6453 -5.1543 50 1 4.6269 -0.2446 -4.1682 51 1 4.2899 -1.9385 -4.5989 52 1 3.1805 0.8414 -2.2276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040554430.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:28 Heat of formation + Delta-G solvation = 68.339404 kcal Electronic energy + Delta-G solvation = -31965.312903 eV Core-core repulsion = 27967.148204 eV Total energy + Delta-G solvation = -3998.164699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.33662 -40.06654 -38.33059 -35.66871 -34.44065 -33.19492 -32.63956 -31.10657 -29.97547 -29.49511 -29.01470 -26.62464 -25.78422 -25.37221 -24.06065 -22.49485 -22.17374 -21.16823 -20.93885 -20.19959 -18.88556 -18.06590 -16.84834 -16.61316 -16.49990 -15.65361 -15.48061 -15.22777 -14.76918 -14.36633 -14.26211 -14.05156 -13.79057 -13.65799 -13.45023 -13.06124 -12.98367 -12.92663 -12.79687 -12.60532 -12.45938 -12.13050 -12.02516 -11.92404 -11.75993 -11.61524 -11.43306 -11.09363 -10.93066 -10.91707 -10.66520 -10.50344 -10.38484 -10.13646 -10.01738 -9.80531 -9.63735 -9.46519 -9.38347 -9.30788 -8.49612 -8.40985 -8.23694 -6.69829 -5.81018 -3.22873 1.83994 2.45945 2.77550 2.95868 3.34138 3.42426 3.43087 3.43732 4.37367 4.46286 4.66745 4.73722 4.88942 4.92895 5.01144 5.05610 5.13482 5.20412 5.20489 5.30380 5.40914 5.42350 5.55948 5.64699 5.66380 5.69593 5.72215 5.77443 5.87996 5.94428 6.01428 6.06385 6.08399 6.23341 6.27167 6.29908 6.36184 6.45168 6.48082 6.57278 6.63045 6.66677 6.77682 6.84312 6.92762 6.93455 7.00593 7.31399 7.62721 7.68609 7.77619 7.89925 8.41529 8.51266 9.18486 9.82169 10.39773 11.27169 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.003018 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.529417 B = 9274.165938 C =10495.422805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.024 4.024 3 H 0.096 0.904 4 C 0.530 3.470 5 O -0.542 6.542 6 N -0.610 5.610 7 C 0.099 3.901 8 C -0.113 4.113 9 C -0.092 4.092 10 C 0.122 3.878 11 C -0.093 4.093 12 C -0.133 4.133 13 C 0.143 3.857 14 N -0.589 5.589 15 C -0.251 4.251 16 H 0.066 0.934 17 C 0.004 3.996 18 N -0.900 5.900 19 Si 0.897 3.103 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.280 1.280 23 C 0.188 3.812 24 C -0.210 4.210 25 C 0.084 3.916 26 N -0.303 5.303 27 N -0.383 5.383 28 C 0.105 3.895 29 C 0.056 3.944 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.016 0.984 44 H 0.052 0.948 45 H 0.254 0.746 46 H 0.092 0.908 47 H 0.018 0.982 48 H 0.179 0.821 49 H 0.071 0.929 50 H 0.084 0.916 51 H 0.087 0.913 52 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.866 6.350 -13.389 18.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.047 4.047 3 H 0.114 0.886 4 C 0.318 3.682 5 O -0.419 6.419 6 N -0.344 5.344 7 C -0.024 4.024 8 C -0.151 4.151 9 C -0.094 4.094 10 C -0.001 4.001 11 C -0.131 4.131 12 C -0.172 4.172 13 C 0.017 3.983 14 N -0.311 5.311 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.544 5.544 19 Si 0.728 3.272 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.062 3.938 24 C -0.222 4.222 25 C -0.103 4.103 26 N -0.124 5.124 27 N -0.165 5.165 28 C -0.036 4.036 29 C -0.090 4.090 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.110 0.890 47 H 0.036 0.964 48 H 0.196 0.804 49 H 0.090 0.910 50 H 0.103 0.897 51 H 0.105 0.895 52 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 11.452 4.815 -14.638 19.199 hybrid contribution -0.952 1.023 0.419 1.459 sum 10.500 5.838 -14.219 18.615 Atomic orbital electron populations 1.21919 0.92277 1.03292 1.03033 1.19441 0.97202 0.98871 0.89186 0.88603 1.20201 0.80237 0.84586 0.83198 1.90679 1.38523 1.26515 1.86168 1.48551 1.50951 1.29640 1.05261 1.22547 0.95561 0.86741 0.97525 1.22706 1.01740 0.97185 0.93471 1.21822 0.99194 0.94952 0.93449 1.21922 0.98547 0.97617 0.81994 1.21252 0.96392 0.99580 0.95875 1.22022 0.98457 0.99151 0.97545 1.20914 0.89752 0.96963 0.90691 1.44048 1.10026 1.60498 1.16575 1.19161 0.84354 1.03799 1.30757 0.91655 1.25010 0.97293 0.94903 1.02271 1.70027 1.33303 1.08519 1.42551 0.86364 0.83466 0.78932 0.78477 1.21385 1.21843 1.20522 1.20677 0.90428 0.91291 0.91443 1.19479 1.08343 0.95478 0.98870 1.23640 0.98039 0.95709 0.92890 1.77359 1.13779 1.05670 1.15635 1.48358 1.40598 1.08337 1.19190 1.21781 0.94265 1.03933 0.83666 1.22189 1.00192 0.95578 0.91055 0.91694 0.91948 0.90866 0.91458 0.90367 0.92240 0.88305 0.91486 0.92335 0.92563 0.93441 0.93236 0.92206 0.96589 0.92954 0.93610 0.89000 0.96388 0.80412 0.91023 0.89733 0.89456 0.81183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.89 37.16 0.33 -1.41 16 2 C -0.02 -0.31 2.44 -92.93 -0.23 -0.53 16 3 H 0.10 0.99 7.81 -51.93 -0.41 0.58 16 4 C 0.53 8.58 7.17 -10.99 -0.08 8.50 16 5 O -0.54 -10.66 15.70 5.56 0.09 -10.57 16 6 N -0.61 -9.76 3.33 -170.67 -0.57 -10.33 16 7 C 0.10 1.44 4.82 -2.43 -0.01 1.43 16 8 C -0.11 -1.77 4.92 -24.87 -0.12 -1.89 16 9 C -0.09 -1.59 0.56 -154.09 -0.09 -1.67 16 10 C 0.12 2.09 6.05 -3.32 -0.02 2.07 16 11 C -0.09 -1.48 4.52 -27.05 -0.12 -1.60 16 12 C -0.13 -2.13 5.91 -26.55 -0.16 -2.29 16 13 C 0.14 2.83 6.49 -3.70 -0.02 2.80 16 14 N -0.59 -13.63 2.55 -172.67 -0.44 -14.07 16 15 C -0.25 -6.41 9.60 -15.06 -0.14 -6.55 16 16 H 0.07 1.65 7.89 -52.49 -0.41 1.24 16 17 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 18 N -0.90 -24.91 11.17 55.49 0.62 -24.29 16 19 Si 0.90 20.62 29.59 -169.99 -5.03 15.59 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.19 4.13 3.81 -4.04 -0.02 4.12 16 24 C -0.21 -2.76 4.36 -105.05 -0.46 -3.22 16 25 C 0.08 1.23 10.77 -17.36 -0.19 1.04 16 26 N -0.30 -4.47 12.58 30.62 0.39 -4.09 16 27 N -0.38 -4.44 4.01 -68.17 -0.27 -4.71 16 28 C 0.11 0.70 11.47 59.84 0.69 1.39 16 29 C 0.06 0.61 11.38 -17.22 -0.20 0.42 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.80 8.02 -51.92 -0.42 0.38 16 32 H 0.07 0.89 4.99 -51.93 -0.26 0.63 16 33 H 0.07 0.79 7.37 -51.93 -0.38 0.40 16 34 H 0.08 1.27 6.58 -51.93 -0.34 0.93 16 35 H 0.06 0.83 8.01 -51.93 -0.42 0.42 16 36 H 0.10 1.76 7.61 -51.93 -0.39 1.36 16 37 H 0.07 1.26 7.79 -51.93 -0.40 0.86 16 38 H 0.06 0.97 7.79 -51.93 -0.40 0.57 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.68 8.11 -51.92 -0.42 0.25 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.96 7.33 -51.93 -0.38 0.58 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 1.02 7.94 -51.93 -0.41 0.60 16 45 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.09 2.26 5.27 -51.93 -0.27 1.99 16 47 H 0.02 0.44 8.10 -51.93 -0.42 0.02 16 48 H 0.18 2.53 8.06 -52.49 -0.42 2.11 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 51 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 52 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 400.38 15.07 6.03 6.03 Total: -1.00 -32.37 400.38 -8.79 -41.16 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.69 Total: 2.67 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -0.92 Total: 2.62 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.28 Total: -57.50 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.37 -8.79 -41.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040554430.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.498 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds