Wall clock time and date at job start Wed Apr 1 2020 04:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46574 * 2 1 4 4 C 1.50698 * 109.47262 * 119.99393 * 2 1 3 5 5 O 1.21281 * 120.00231 * 120.00223 * 4 2 1 6 6 N 1.34775 * 120.00435 * 300.00160 * 4 2 1 7 7 C 1.47489 * 125.65937 * 359.97438 * 6 4 2 8 8 C 1.55036 * 104.90415 * 204.02880 * 7 6 4 9 9 C 1.54492 * 101.53294 * 323.65249 * 8 7 6 10 10 C 1.47186 * 125.66926 * 179.97438 * 6 4 2 11 11 C 1.52222 * 110.29288 * 153.33997 * 9 8 7 12 12 C 1.53155 * 109.71031 * 63.16217 * 11 9 8 13 13 C 1.53189 * 109.28230 * 60.15489 * 12 11 9 14 14 N 1.46942 * 108.87721 * 304.70716 * 13 12 11 15 15 C 1.36927 * 120.70646 * 234.25983 * 14 13 12 16 16 H 1.08001 * 120.00181 * 27.24954 * 15 14 13 17 17 C 1.38820 * 120.00109 * 207.24869 * 15 14 13 18 18 N 1.31613 * 119.99771 * 17.18663 * 17 15 14 19 19 Si 1.86801 * 119.99834 * 197.18972 * 17 15 14 20 20 H 1.48500 * 109.46838 * 90.00014 * 19 17 15 21 21 H 1.48503 * 109.47056 * 209.99816 * 19 17 15 22 22 H 1.48496 * 109.47414 * 329.99840 * 19 17 15 23 23 C 1.47072 * 118.59210 * 54.23663 * 14 13 12 24 24 C 1.50694 * 109.47328 * 239.99828 * 2 1 3 25 25 C 1.39874 * 126.03943 * 300.01841 * 24 2 1 26 26 N 1.30838 * 108.20174 * 179.97438 * 25 24 2 27 27 N 1.40093 * 108.20627 * 0.02562 * 26 25 24 28 28 C 1.46496 * 126.03334 * 179.97438 * 27 26 25 29 29 C 1.34951 * 107.92195 * 359.75706 * 27 26 25 30 30 H 1.08990 * 109.47257 * 60.00701 * 1 2 3 31 31 H 1.09007 * 109.46451 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47080 * 299.99974 * 1 2 3 33 33 H 1.08997 * 110.35639 * 322.88349 * 7 6 4 34 34 H 1.09000 * 110.35684 * 85.06737 * 7 6 4 35 35 H 1.09006 * 111.01227 * 81.70936 * 8 7 6 36 36 H 1.08992 * 111.01335 * 205.58682 * 8 7 6 37 37 H 1.08998 * 109.90680 * 297.82387 * 10 6 4 38 38 H 1.08999 * 109.90473 * 59.08185 * 10 6 4 39 39 H 1.09004 * 109.43645 * 183.23521 * 11 9 8 40 40 H 1.09007 * 109.43440 * 303.13516 * 11 9 8 41 41 H 1.09002 * 109.50298 * 180.09451 * 12 11 9 42 42 H 1.09000 * 109.50023 * 300.17440 * 12 11 9 43 43 H 1.08998 * 109.57415 * 64.53061 * 13 12 11 44 44 H 1.09005 * 109.56874 * 184.77123 * 13 12 11 45 45 H 0.96999 * 119.99752 * 179.97438 * 18 17 15 46 46 H 1.08996 * 109.57520 * 187.74301 * 23 14 13 47 47 H 1.09006 * 109.57023 * 67.37944 * 23 14 13 48 48 H 1.07992 * 125.89834 * 0.02562 * 25 24 2 49 49 H 1.08997 * 109.46927 * 90.03237 * 28 27 26 50 50 H 1.09009 * 109.46706 * 210.02362 * 28 27 26 51 51 H 1.08992 * 109.47651 * 330.02319 * 28 27 26 52 52 H 1.07998 * 126.12266 * 180.24083 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7297 -1.6963 1.1194 6 7 1.7068 -0.2498 2.4546 7 6 0.8711 0.9329 2.7341 8 6 1.2929 1.3929 4.1533 9 6 1.5508 0.0396 4.8526 10 6 2.1262 -0.8435 3.7344 11 6 2.5618 0.2109 5.9776 12 6 1.9911 1.1472 7.0469 13 6 0.7016 0.5434 7.6119 14 7 -0.2255 0.2793 6.5028 15 6 -1.4974 0.7860 6.5190 16 1 -1.7096 1.6953 7.0617 17 6 -2.5143 0.1309 5.8378 18 7 -2.3572 -1.1222 5.4675 19 14 -4.1054 1.0281 5.4468 20 1 -3.9862 1.6936 4.1246 21 1 -5.2267 0.0551 5.4120 22 1 -4.3681 2.0489 6.4929 23 6 0.2420 -0.5405 5.3748 24 6 2.0324 -0.7104 -1.2304 25 6 1.7732 -2.0408 -1.5759 26 7 2.3770 -2.2938 -2.7088 27 7 3.0410 -1.1309 -3.1202 28 6 3.8407 -0.9803 -4.3384 29 6 2.8097 -0.1725 -2.1986 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.0709 1.7190 2.0059 34 1 -0.1848 0.6631 2.7196 35 1 2.2023 1.9928 4.1156 36 1 0.4865 1.9385 4.6431 37 1 1.7317 -1.8560 3.8208 38 1 3.2142 -0.8598 3.7972 39 1 2.7765 -0.7603 6.4234 40 1 3.4816 0.6372 5.5769 41 1 2.7182 1.2688 7.8498 42 1 1.7743 2.1184 6.6020 43 1 0.9303 -0.3897 8.1267 44 1 0.2463 1.2443 8.3117 45 1 -3.0679 -1.5801 4.9919 46 1 -0.5049 -0.5292 4.5810 47 1 0.4049 -1.5647 5.7105 48 1 1.1771 -2.7383 -1.0065 49 1 3.2002 -0.6453 -5.1543 50 1 4.6269 -0.2446 -4.1682 51 1 4.2899 -1.9385 -4.5989 52 1 3.1805 0.8414 -2.2276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040554430.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:26 Heat of formation + Delta-G solvation = 49.056861 kcal Electronic energy + Delta-G solvation = -31966.149057 eV Core-core repulsion = 27967.148204 eV Total energy + Delta-G solvation = -3999.000853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.28422 -41.37612 -39.71632 -37.18042 -35.47665 -34.83100 -33.60801 -32.57972 -31.65169 -30.52889 -30.21192 -27.47275 -27.28599 -27.03226 -25.21561 -23.92919 -23.59402 -22.35889 -22.01566 -21.36155 -20.10131 -19.55217 -18.42046 -17.79655 -17.69288 -16.96986 -16.60925 -16.45276 -16.20818 -15.72892 -15.41683 -15.22996 -15.19152 -15.03028 -14.86478 -14.43802 -14.15078 -14.02760 -13.77804 -13.63812 -13.53722 -13.40624 -13.37248 -13.18943 -13.02841 -12.88945 -12.71006 -12.65950 -12.49047 -12.30029 -12.20277 -12.08115 -11.75362 -11.59294 -11.46110 -11.26256 -11.13241 -10.95923 -10.69040 -10.46621 -10.30953 -9.57883 -9.31288 -8.61979 -7.80515 -5.24939 0.97038 1.50728 1.52564 1.60658 1.68320 1.71360 1.75796 2.24270 2.56235 3.31746 3.47712 3.59881 3.73537 3.76402 3.91762 4.01440 4.02573 4.20864 4.23938 4.32867 4.34028 4.39483 4.40757 4.47229 4.49531 4.53558 4.64735 4.70768 4.71323 4.79913 4.82107 4.83484 4.87204 4.98661 5.01854 5.05276 5.12669 5.18313 5.21543 5.24279 5.32474 5.35712 5.45196 5.46171 5.53072 5.64371 5.67546 5.72519 5.82082 6.19688 6.44319 6.65380 6.73674 7.20731 7.25016 7.92716 8.45687 9.25297 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.003018 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.529417 B = 9274.165938 C =10495.422805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.011 4.011 3 H 0.133 0.867 4 C 0.525 3.475 5 O -0.583 6.583 6 N -0.611 5.611 7 C 0.102 3.898 8 C -0.104 4.104 9 C -0.084 4.084 10 C 0.126 3.874 11 C -0.091 4.091 12 C -0.119 4.119 13 C 0.136 3.864 14 N -0.603 5.603 15 C -0.250 4.250 16 H 0.069 0.931 17 C -0.047 4.047 18 N -0.935 5.935 19 Si 0.958 3.042 20 H -0.278 1.278 21 H -0.305 1.305 22 H -0.270 1.270 23 C 0.202 3.798 24 C -0.235 4.235 25 C 0.060 3.940 26 N -0.341 5.341 27 N -0.381 5.381 28 C 0.094 3.906 29 C 0.073 3.927 30 H 0.087 0.913 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.004 0.996 44 H 0.054 0.946 45 H 0.246 0.754 46 H 0.061 0.939 47 H -0.025 1.025 48 H 0.162 0.838 49 H 0.089 0.911 50 H 0.117 0.883 51 H 0.084 0.916 52 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.914 10.441 -14.785 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 H 0.151 0.849 4 C 0.315 3.685 5 O -0.463 6.463 6 N -0.344 5.344 7 C -0.020 4.020 8 C -0.142 4.142 9 C -0.086 4.086 10 C 0.002 3.998 11 C -0.129 4.129 12 C -0.158 4.158 13 C 0.010 3.990 14 N -0.326 5.326 15 C -0.381 4.381 16 H 0.087 0.913 17 C -0.242 4.242 18 N -0.582 5.582 19 Si 0.787 3.213 20 H -0.204 1.204 21 H -0.232 1.232 22 H -0.195 1.195 23 C 0.076 3.924 24 C -0.247 4.247 25 C -0.125 4.125 26 N -0.164 5.164 27 N -0.163 5.163 28 C -0.046 4.046 29 C -0.074 4.074 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.128 0.872 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.022 0.978 44 H 0.072 0.928 45 H 0.055 0.945 46 H 0.079 0.921 47 H -0.007 1.007 48 H 0.179 0.821 49 H 0.108 0.892 50 H 0.136 0.864 51 H 0.102 0.898 52 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 13.513 8.936 -16.027 22.789 hybrid contribution -1.551 -0.321 0.880 1.812 sum 11.962 8.615 -15.147 21.136 Atomic orbital electron populations 1.21887 0.92090 1.02155 1.03921 1.19430 0.97104 0.99982 0.86832 0.84911 1.21004 0.79353 0.84133 0.84041 1.90658 1.40538 1.28375 1.86754 1.48642 1.50853 1.29955 1.04900 1.22585 0.94012 0.87062 0.98313 1.22638 1.02434 0.95843 0.93251 1.21581 0.96925 0.95907 0.94181 1.21772 0.98905 0.96121 0.83000 1.21269 0.96952 0.99530 0.95162 1.21884 0.96717 0.98846 0.98325 1.21106 0.91120 0.96728 0.90017 1.44291 1.10092 1.60294 1.17959 1.19459 0.85360 1.03527 1.29706 0.91318 1.25691 1.00265 0.95401 1.02892 1.70209 1.33903 1.10118 1.43959 0.85405 0.79552 0.77644 0.78727 1.20422 1.23212 1.19472 1.20352 0.92204 0.89544 0.90320 1.19625 1.10069 0.95001 1.00028 1.23600 0.98734 0.96797 0.93380 1.77267 1.15112 1.07906 1.16072 1.48783 1.39804 1.07480 1.20256 1.22195 0.94950 1.04941 0.82468 1.22854 0.98103 0.96951 0.89471 0.89400 0.94243 0.91170 0.87180 0.92762 0.89025 0.90209 0.94805 0.91179 0.93417 0.90236 0.90181 0.91412 0.97827 0.92769 0.94506 0.92071 1.00681 0.82104 0.89245 0.86428 0.89751 0.76548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.89 71.98 0.64 -2.60 16 2 C -0.01 -0.26 2.44 -12.29 -0.03 -0.29 16 3 H 0.13 2.08 7.81 -2.38 -0.02 2.06 16 4 C 0.52 16.77 7.17 87.66 0.63 17.40 16 5 O -0.58 -23.49 15.70 -3.03 -0.05 -23.53 16 6 N -0.61 -19.19 3.33 -812.26 -2.70 -21.89 16 7 C 0.10 2.80 4.82 86.89 0.42 3.22 16 8 C -0.10 -3.01 4.92 31.80 0.16 -2.86 16 9 C -0.08 -2.87 0.56 -51.91 -0.03 -2.90 16 10 C 0.13 4.36 6.05 86.47 0.52 4.89 16 11 C -0.09 -2.70 4.52 30.39 0.14 -2.57 16 12 C -0.12 -3.50 5.91 30.71 0.18 -3.32 16 13 C 0.14 5.30 6.49 86.36 0.56 5.86 16 14 N -0.60 -28.49 2.55 -700.22 -1.78 -30.28 16 15 C -0.25 -12.95 9.60 84.04 0.81 -12.14 16 16 H 0.07 3.46 7.89 -2.91 -0.02 3.43 16 17 C -0.05 -2.53 4.92 84.86 0.42 -2.11 16 18 N -0.94 -54.44 11.17 21.65 0.24 -54.20 16 19 Si 0.96 43.09 29.59 68.60 2.03 45.12 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 C 0.20 9.32 3.81 86.07 0.33 9.65 16 24 C -0.24 -5.86 4.36 -20.14 -0.09 -5.95 16 25 C 0.06 1.83 10.77 85.24 0.92 2.74 16 26 N -0.34 -10.14 12.58 -57.03 -0.72 -10.86 16 27 N -0.38 -8.03 4.01 -369.58 -1.48 -9.51 16 28 C 0.09 0.97 11.47 127.77 1.47 2.44 16 29 C 0.07 1.37 11.38 83.54 0.95 2.32 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.05 8.02 -2.38 -0.02 1.03 16 32 H 0.07 1.62 4.99 -2.39 -0.01 1.61 16 33 H 0.11 2.11 7.37 -2.39 -0.02 2.09 16 34 H 0.05 1.77 6.58 -2.39 -0.02 1.76 16 35 H 0.09 2.13 8.01 -2.38 -0.02 2.11 16 36 H 0.08 2.69 7.61 -2.39 -0.02 2.67 16 37 H 0.03 1.38 7.79 -2.39 -0.02 1.36 16 38 H 0.07 2.28 7.79 -2.39 -0.02 2.26 16 39 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.08 1.92 8.11 -2.38 -0.02 1.90 16 41 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.07 1.93 7.33 -2.39 -0.02 1.92 16 43 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.05 2.06 7.94 -2.38 -0.02 2.04 16 45 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 46 H 0.06 3.20 5.27 -2.39 -0.01 3.19 16 47 H -0.02 -1.32 8.10 -2.38 -0.02 -1.34 16 48 H 0.16 5.12 8.06 -2.91 -0.02 5.10 16 49 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 51 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.22 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -76.15 400.38 4.42 -71.73 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.90 Total: 19.64 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 7.99 Total: 13.78 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -6.45 Total: -126.73 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.05 Total: -23.53 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -76.15 4.42 -71.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040554430.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.783 kcal (2) G-P(sol) polarization free energy of solvation -76.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds