Wall clock time and date at job start Wed Apr 1 2020 04:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46510 * 2 1 4 4 C 1.50697 * 109.47241 * 240.00385 * 2 1 3 5 5 O 1.21277 * 119.99625 * 266.32461 * 4 2 1 6 6 N 1.34772 * 120.00316 * 86.32878 * 4 2 1 7 7 C 1.47088 * 125.62233 * 354.84490 * 6 4 2 8 8 C 1.54472 * 107.42305 * 178.96006 * 7 6 4 9 9 C 1.54572 * 102.75428 * 338.70261 * 8 7 6 10 10 C 1.47571 * 125.62907 * 174.89506 * 6 4 2 11 11 C 1.52078 * 110.52147 * 276.32224 * 9 8 7 12 12 C 1.53194 * 109.67181 * 177.48373 * 11 9 8 13 13 C 1.53180 * 109.27948 * 59.96016 * 12 11 9 14 14 N 1.46942 * 108.93520 * 304.68369 * 13 12 11 15 15 C 1.36928 * 120.71289 * 234.22949 * 14 13 12 16 16 H 1.07998 * 119.99993 * 152.40052 * 15 14 13 17 17 C 1.38811 * 120.00204 * 332.40101 * 15 14 13 18 18 N 1.31623 * 120.00393 * 159.96704 * 17 15 14 19 19 Si 1.86798 * 119.99932 * 339.96772 * 17 15 14 20 20 H 1.48503 * 109.47162 * 95.06175 * 19 17 15 21 21 H 1.48503 * 109.47018 * 215.05829 * 19 17 15 22 22 H 1.48496 * 109.47329 * 335.05852 * 19 17 15 23 23 C 1.47107 * 118.57154 * 54.25249 * 14 13 12 24 24 C 1.50695 * 109.47300 * 119.99836 * 2 1 3 25 25 C 1.39873 * 126.03755 * 59.69201 * 24 2 1 26 26 N 1.30839 * 108.20086 * 179.81995 * 25 24 2 27 27 N 1.40087 * 108.20705 * 0.43952 * 26 25 24 28 28 C 1.46500 * 126.03684 * 179.69747 * 27 26 25 29 29 C 1.34951 * 107.92045 * 359.72041 * 27 26 25 30 30 H 1.09009 * 109.46526 * 182.60827 * 1 2 3 31 31 H 1.09001 * 109.47435 * 302.60360 * 1 2 3 32 32 H 1.08999 * 109.47069 * 62.60906 * 1 2 3 33 33 H 1.08997 * 109.87947 * 298.45882 * 7 6 4 34 34 H 1.09002 * 109.87866 * 59.46245 * 7 6 4 35 35 H 1.09005 * 110.73222 * 96.96240 * 8 7 6 36 36 H 1.09005 * 110.73321 * 220.26764 * 8 7 6 37 37 H 1.09001 * 110.37754 * 322.07943 * 10 6 4 38 38 H 1.08998 * 110.38162 * 84.32023 * 10 6 4 39 39 H 1.08993 * 109.43549 * 297.54300 * 11 9 8 40 40 H 1.08999 * 109.43539 * 57.46260 * 11 9 8 41 41 H 1.09003 * 109.49837 * 179.90248 * 12 11 9 42 42 H 1.09005 * 109.50332 * 300.01552 * 12 11 9 43 43 H 1.09000 * 109.56472 * 64.51703 * 13 12 11 44 44 H 1.08998 * 109.56245 * 184.84979 * 13 12 11 45 45 H 0.96991 * 120.00313 * 180.02562 * 18 17 15 46 46 H 1.09003 * 109.57106 * 187.94347 * 23 14 13 47 47 H 1.09001 * 109.57769 * 67.55580 * 23 14 13 48 48 H 1.08000 * 125.89762 * 0.02562 * 25 24 2 49 49 H 1.08997 * 109.46977 * 270.02411 * 28 27 26 50 50 H 1.09002 * 109.47048 * 30.02942 * 28 27 26 51 51 H 1.08995 * 109.46841 * 150.02849 * 28 27 26 52 52 H 1.08001 * 126.12092 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.2980 -1.8926 -1.1821 6 7 2.1866 -0.0317 -2.3846 7 6 1.8038 1.3702 -2.6119 8 6 2.1900 1.7254 -4.0647 9 6 3.2626 0.6648 -4.4018 10 6 2.7663 -0.5728 -3.6291 11 6 4.6266 1.1058 -3.8940 12 6 5.6619 0.0142 -4.1822 13 6 5.7330 -0.2293 -5.6929 14 7 4.3869 -0.5484 -6.1883 15 6 4.1584 -1.6927 -6.9047 16 1 3.1826 -2.1551 -6.8871 17 6 5.1811 -2.2585 -7.6537 18 7 5.1113 -3.5225 -8.0140 19 14 6.6564 -1.2260 -8.1504 20 1 7.7509 -1.4207 -7.1658 21 1 7.1220 -1.6437 -9.4972 22 1 6.2691 0.2072 -8.1830 23 6 3.2902 0.3882 -5.8984 24 6 2.0324 -0.7103 1.2304 25 6 1.7686 -2.0390 1.5789 26 7 2.3777 -2.2939 2.7085 27 7 3.0410 -1.1308 3.1203 28 6 3.8400 -0.9799 4.3389 29 6 2.8135 -0.1738 2.1964 30 1 -0.3633 -1.0267 0.0468 31 1 -0.3634 0.5537 0.8657 32 1 -0.3633 0.4728 -0.9124 33 1 0.7289 1.4878 -2.4747 34 1 2.3390 2.0178 -1.9173 35 1 1.3299 1.6281 -4.7274 36 1 2.6078 2.7308 -4.1182 37 1 3.5996 -1.2377 -3.4019 38 1 2.0057 -1.1013 -4.2038 39 1 4.9207 2.0267 -4.3975 40 1 4.5743 1.2808 -2.8194 41 1 6.6386 0.3339 -3.8188 42 1 5.3692 -0.9071 -3.6785 43 1 6.1016 0.6678 -6.1903 44 1 6.4042 -1.0635 -5.8970 45 1 5.8260 -3.9180 -8.5370 46 1 2.3421 -0.0534 -6.2057 47 1 3.4534 1.3204 -6.4392 48 1 1.1688 -2.7353 1.0117 49 1 3.1989 -0.6461 5.1547 50 1 4.2902 -1.9379 4.5991 51 1 4.6254 -0.2434 4.1694 52 1 3.1876 0.8390 2.2233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040554432.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:40 Heat of formation + Delta-G solvation = 72.951573 kcal Electronic energy + Delta-G solvation = -31846.138869 eV Core-core repulsion = 27848.174168 eV Total energy + Delta-G solvation = -3997.964700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.42491 -40.29413 -38.50391 -36.02406 -34.48949 -33.10354 -32.59881 -31.41082 -30.84371 -29.61300 -29.13595 -26.71140 -26.34430 -25.32402 -24.15999 -22.97016 -22.08745 -21.23436 -20.97244 -20.65765 -18.86307 -18.29775 -17.05724 -16.75664 -16.64107 -15.95419 -15.62317 -15.36131 -14.99487 -14.53211 -14.27897 -14.11951 -14.06292 -13.80760 -13.75092 -13.33641 -13.11768 -13.06645 -12.91135 -12.77560 -12.65207 -12.33427 -12.30998 -12.03949 -11.89285 -11.73457 -11.61526 -11.50776 -11.45761 -11.09541 -10.83398 -10.59547 -10.47813 -10.39312 -10.00852 -9.81828 -9.63449 -9.60969 -9.41621 -9.39338 -8.58944 -8.51793 -8.36563 -6.94446 -5.90960 -3.27734 1.75539 2.38693 2.65131 2.88997 3.26582 3.34803 3.49986 3.52519 4.29892 4.46623 4.55785 4.61446 4.66063 4.76986 4.83229 4.86094 4.95324 5.04730 5.06583 5.10369 5.16094 5.28480 5.30416 5.32578 5.42246 5.53203 5.54547 5.58495 5.64492 5.74180 5.79991 5.87855 5.89271 5.97418 6.01114 6.07659 6.10695 6.21860 6.27133 6.37883 6.42562 6.53365 6.56182 6.59281 6.61887 6.68280 6.75719 6.85085 6.98639 7.62192 7.75094 7.98395 8.36107 8.40084 8.96173 9.75001 10.12343 11.24944 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015350 B = 0.002806 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.634322 B = 9974.587061 C =10489.189787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.024 4.024 3 H 0.091 0.909 4 C 0.530 3.470 5 O -0.531 6.531 6 N -0.619 5.619 7 C 0.103 3.897 8 C -0.123 4.123 9 C -0.085 4.085 10 C 0.128 3.872 11 C -0.091 4.091 12 C -0.139 4.139 13 C 0.126 3.874 14 N -0.604 5.604 15 C -0.258 4.258 16 H 0.085 0.915 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.883 3.117 20 H -0.290 1.290 21 H -0.305 1.305 22 H -0.270 1.270 23 C 0.166 3.834 24 C -0.221 4.221 25 C 0.087 3.913 26 N -0.304 5.304 27 N -0.382 5.382 28 C 0.104 3.896 29 C 0.058 3.942 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.025 0.975 44 H 0.070 0.930 45 H 0.262 0.738 46 H 0.065 0.935 47 H 0.027 0.973 48 H 0.183 0.817 49 H 0.072 0.928 50 H 0.088 0.912 51 H 0.085 0.915 52 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.920 15.434 21.070 27.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.046 4.046 3 H 0.109 0.891 4 C 0.318 3.682 5 O -0.406 6.406 6 N -0.353 5.353 7 C -0.020 4.020 8 C -0.161 4.161 9 C -0.088 4.088 10 C 0.007 3.993 11 C -0.128 4.128 12 C -0.178 4.178 13 C 0.001 3.999 14 N -0.327 5.327 15 C -0.386 4.386 16 H 0.103 0.897 17 C -0.175 4.175 18 N -0.551 5.551 19 Si 0.714 3.286 20 H -0.218 1.218 21 H -0.233 1.233 22 H -0.195 1.195 23 C 0.039 3.961 24 C -0.233 4.233 25 C -0.099 4.099 26 N -0.125 5.125 27 N -0.163 5.163 28 C -0.037 4.037 29 C -0.089 4.089 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.043 0.957 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.045 0.955 48 H 0.200 0.800 49 H 0.091 0.909 50 H 0.106 0.894 51 H 0.103 0.897 52 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.382 13.715 22.108 26.788 hybrid contribution 0.919 1.219 -0.973 1.810 sum -5.463 14.934 21.135 26.449 Atomic orbital electron populations 1.21701 0.92282 1.03092 1.02197 1.19436 0.97073 0.98721 0.89407 0.89099 1.20184 0.77949 0.87038 0.83031 1.90715 1.50339 1.15320 1.84247 1.48673 1.61966 1.12777 1.11905 1.22040 0.99457 0.82814 0.97710 1.22656 0.99386 0.99439 0.94652 1.21665 0.94486 0.93912 0.98697 1.22190 0.98257 0.95924 0.82921 1.21181 0.93993 0.98269 0.99376 1.22097 0.97552 0.98911 0.99228 1.21324 0.88348 0.98702 0.91560 1.44355 1.03389 1.23083 1.61921 1.18884 0.99803 0.98453 1.21442 0.89703 1.25272 0.98098 0.95978 0.98195 1.69835 1.34003 1.10745 1.40527 0.86930 0.83195 0.81569 0.76890 1.21811 1.23322 1.19461 1.20714 0.92651 0.93062 0.89660 1.19516 1.08927 0.95806 0.99096 1.23740 0.97907 0.95638 0.92634 1.77402 1.13712 1.05523 1.15825 1.48403 1.40540 1.08350 1.19048 1.21805 0.94298 1.04072 0.83570 1.22219 1.00040 0.95649 0.90943 0.91780 0.91551 0.92021 0.91702 0.91920 0.90317 0.90156 0.89757 0.91437 0.92345 0.93071 0.92888 0.91553 0.95718 0.91214 0.92810 0.91637 0.95466 0.80027 0.90942 0.89355 0.89667 0.81151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 9.09 37.16 0.34 -0.84 16 2 C -0.02 -0.25 2.57 -92.92 -0.24 -0.49 16 3 H 0.09 0.75 7.19 -51.93 -0.37 0.38 16 4 C 0.53 7.83 6.93 -10.99 -0.08 7.76 16 5 O -0.53 -10.23 15.53 5.56 0.09 -10.14 16 6 N -0.62 -8.56 3.32 -170.76 -0.57 -9.12 16 7 C 0.10 1.02 5.95 -2.95 -0.02 1.00 16 8 C -0.12 -1.31 5.91 -25.13 -0.15 -1.46 16 9 C -0.09 -1.27 0.55 -153.97 -0.08 -1.35 16 10 C 0.13 2.17 5.61 -2.88 -0.02 2.16 16 11 C -0.09 -1.34 4.64 -27.10 -0.13 -1.46 16 12 C -0.14 -2.48 5.91 -26.54 -0.16 -2.64 16 13 C 0.13 2.73 4.17 -3.71 -0.02 2.71 16 14 N -0.60 -13.94 2.67 -172.76 -0.46 -14.40 16 15 C -0.26 -7.12 10.05 -15.06 -0.15 -7.28 16 16 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 17 C 0.02 0.68 5.25 -17.43 -0.09 0.59 16 18 N -0.91 -28.18 13.97 55.49 0.78 -27.40 16 19 Si 0.88 22.49 24.36 -169.99 -4.14 18.35 16 20 H -0.29 -7.22 6.71 56.52 0.38 -6.84 16 21 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 22 H -0.27 -6.65 6.45 56.52 0.36 -6.28 16 23 C 0.17 3.04 5.21 -4.11 -0.02 3.02 16 24 C -0.22 -2.64 4.63 -105.06 -0.49 -3.12 16 25 C 0.09 1.20 10.42 -17.36 -0.18 1.02 16 26 N -0.30 -4.28 12.58 30.63 0.39 -3.90 16 27 N -0.38 -4.17 4.01 -68.16 -0.27 -4.44 16 28 C 0.10 0.65 11.47 59.85 0.69 1.33 16 29 C 0.06 0.58 11.38 -17.22 -0.20 0.38 16 30 H 0.06 0.63 7.94 -51.92 -0.41 0.21 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.48 7.24 -51.93 -0.38 0.11 16 33 H 0.06 0.53 7.24 -51.93 -0.38 0.15 16 34 H 0.06 0.51 7.67 -51.93 -0.40 0.12 16 35 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 36 H 0.08 0.73 8.01 -51.93 -0.42 0.31 16 37 H 0.08 1.72 6.07 -51.93 -0.31 1.40 16 38 H 0.07 1.24 7.87 -51.93 -0.41 0.84 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.69 7.85 -51.93 -0.41 0.29 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.31 6.33 -51.93 -0.33 0.98 16 43 H 0.02 0.53 7.02 -51.93 -0.36 0.16 16 44 H 0.07 1.69 4.48 -51.93 -0.23 1.45 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 46 H 0.07 1.21 7.75 -51.93 -0.40 0.81 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.18 2.45 7.93 -52.49 -0.42 2.03 16 49 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 52 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 396.47 15.07 5.97 5.97 Total: -1.00 -35.97 396.47 -7.85 -43.81 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -8.64 Total: -0.06 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -0.98 Total: 1.33 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.14 Total: -59.27 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.14 Total: 18.35 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.97 -7.85 -43.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040554432.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.764 kcal (2) G-P(sol) polarization free energy of solvation -35.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds