Wall clock time and date at job start Wed Apr 1 2020 04:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46510 * 2 1 4 4 C 1.50697 * 109.47241 * 240.00385 * 2 1 3 5 5 O 1.21277 * 119.99625 * 266.32461 * 4 2 1 6 6 N 1.34772 * 120.00316 * 86.32878 * 4 2 1 7 7 C 1.47088 * 125.62233 * 354.84490 * 6 4 2 8 8 C 1.54472 * 107.42305 * 178.96006 * 7 6 4 9 9 C 1.54572 * 102.75428 * 338.70261 * 8 7 6 10 10 C 1.47571 * 125.62907 * 174.89506 * 6 4 2 11 11 C 1.52078 * 110.52147 * 276.32224 * 9 8 7 12 12 C 1.53194 * 109.67181 * 177.48373 * 11 9 8 13 13 C 1.53180 * 109.27948 * 59.96016 * 12 11 9 14 14 N 1.46942 * 108.93520 * 304.68369 * 13 12 11 15 15 C 1.36928 * 120.71289 * 234.22949 * 14 13 12 16 16 H 1.07998 * 119.99993 * 152.40052 * 15 14 13 17 17 C 1.38811 * 120.00204 * 332.40101 * 15 14 13 18 18 N 1.31623 * 120.00393 * 159.96704 * 17 15 14 19 19 Si 1.86798 * 119.99932 * 339.96772 * 17 15 14 20 20 H 1.48503 * 109.47162 * 95.06175 * 19 17 15 21 21 H 1.48503 * 109.47018 * 215.05829 * 19 17 15 22 22 H 1.48496 * 109.47329 * 335.05852 * 19 17 15 23 23 C 1.47107 * 118.57154 * 54.25249 * 14 13 12 24 24 C 1.50695 * 109.47300 * 119.99836 * 2 1 3 25 25 C 1.39873 * 126.03755 * 59.69201 * 24 2 1 26 26 N 1.30839 * 108.20086 * 179.81995 * 25 24 2 27 27 N 1.40087 * 108.20705 * 0.43952 * 26 25 24 28 28 C 1.46500 * 126.03684 * 179.69747 * 27 26 25 29 29 C 1.34951 * 107.92045 * 359.72041 * 27 26 25 30 30 H 1.09009 * 109.46526 * 182.60827 * 1 2 3 31 31 H 1.09001 * 109.47435 * 302.60360 * 1 2 3 32 32 H 1.08999 * 109.47069 * 62.60906 * 1 2 3 33 33 H 1.08997 * 109.87947 * 298.45882 * 7 6 4 34 34 H 1.09002 * 109.87866 * 59.46245 * 7 6 4 35 35 H 1.09005 * 110.73222 * 96.96240 * 8 7 6 36 36 H 1.09005 * 110.73321 * 220.26764 * 8 7 6 37 37 H 1.09001 * 110.37754 * 322.07943 * 10 6 4 38 38 H 1.08998 * 110.38162 * 84.32023 * 10 6 4 39 39 H 1.08993 * 109.43549 * 297.54300 * 11 9 8 40 40 H 1.08999 * 109.43539 * 57.46260 * 11 9 8 41 41 H 1.09003 * 109.49837 * 179.90248 * 12 11 9 42 42 H 1.09005 * 109.50332 * 300.01552 * 12 11 9 43 43 H 1.09000 * 109.56472 * 64.51703 * 13 12 11 44 44 H 1.08998 * 109.56245 * 184.84979 * 13 12 11 45 45 H 0.96991 * 120.00313 * 180.02562 * 18 17 15 46 46 H 1.09003 * 109.57106 * 187.94347 * 23 14 13 47 47 H 1.09001 * 109.57769 * 67.55580 * 23 14 13 48 48 H 1.08000 * 125.89762 * 0.02562 * 25 24 2 49 49 H 1.08997 * 109.46977 * 270.02411 * 28 27 26 50 50 H 1.09002 * 109.47048 * 30.02942 * 28 27 26 51 51 H 1.08995 * 109.46841 * 150.02849 * 28 27 26 52 52 H 1.08001 * 126.12092 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.2980 -1.8926 -1.1821 6 7 2.1866 -0.0317 -2.3846 7 6 1.8038 1.3702 -2.6119 8 6 2.1900 1.7254 -4.0647 9 6 3.2626 0.6648 -4.4018 10 6 2.7663 -0.5728 -3.6291 11 6 4.6266 1.1058 -3.8940 12 6 5.6619 0.0142 -4.1822 13 6 5.7330 -0.2293 -5.6929 14 7 4.3869 -0.5484 -6.1883 15 6 4.1584 -1.6927 -6.9047 16 1 3.1826 -2.1551 -6.8871 17 6 5.1811 -2.2585 -7.6537 18 7 5.1113 -3.5225 -8.0140 19 14 6.6564 -1.2260 -8.1504 20 1 7.7509 -1.4207 -7.1658 21 1 7.1220 -1.6437 -9.4972 22 1 6.2691 0.2072 -8.1830 23 6 3.2902 0.3882 -5.8984 24 6 2.0324 -0.7103 1.2304 25 6 1.7686 -2.0390 1.5789 26 7 2.3777 -2.2939 2.7085 27 7 3.0410 -1.1308 3.1203 28 6 3.8400 -0.9799 4.3389 29 6 2.8135 -0.1738 2.1964 30 1 -0.3633 -1.0267 0.0468 31 1 -0.3634 0.5537 0.8657 32 1 -0.3633 0.4728 -0.9124 33 1 0.7289 1.4878 -2.4747 34 1 2.3390 2.0178 -1.9173 35 1 1.3299 1.6281 -4.7274 36 1 2.6078 2.7308 -4.1182 37 1 3.5996 -1.2377 -3.4019 38 1 2.0057 -1.1013 -4.2038 39 1 4.9207 2.0267 -4.3975 40 1 4.5743 1.2808 -2.8194 41 1 6.6386 0.3339 -3.8188 42 1 5.3692 -0.9071 -3.6785 43 1 6.1016 0.6678 -6.1903 44 1 6.4042 -1.0635 -5.8970 45 1 5.8260 -3.9180 -8.5370 46 1 2.3421 -0.0534 -6.2057 47 1 3.4534 1.3204 -6.4392 48 1 1.1688 -2.7353 1.0117 49 1 3.1989 -0.6461 5.1547 50 1 4.2902 -1.9379 4.5991 51 1 4.6254 -0.2434 4.1694 52 1 3.1876 0.8390 2.2233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040554432.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:38 Heat of formation + Delta-G solvation = 47.633522 kcal Electronic energy + Delta-G solvation = -31847.236742 eV Core-core repulsion = 27848.174168 eV Total energy + Delta-G solvation = -3999.062573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.28488 -41.44241 -39.77279 -37.48035 -35.38065 -34.70219 -33.57878 -32.78751 -32.60754 -30.41310 -30.21009 -27.69806 -27.33882 -27.12158 -25.19182 -24.01263 -23.71739 -22.44643 -22.05879 -21.54008 -19.85045 -19.63019 -18.68806 -18.01463 -17.61914 -17.26631 -17.01611 -16.40823 -15.98925 -15.82191 -15.55394 -15.33736 -15.20033 -15.04409 -14.94149 -14.84439 -14.28140 -14.08317 -13.91076 -13.79374 -13.61169 -13.50963 -13.39075 -13.32323 -13.08965 -12.97062 -12.89525 -12.55153 -12.47866 -12.46136 -12.18855 -12.09017 -11.94909 -11.62269 -11.47462 -11.43406 -11.16611 -11.07788 -10.72833 -10.64230 -10.31311 -9.53763 -9.31202 -8.88883 -8.15884 -5.47590 0.96498 1.30046 1.39743 1.50097 1.61860 1.75306 1.82162 2.24496 2.42440 3.04382 3.31139 3.55570 3.61023 3.71683 3.85511 3.86314 4.01715 4.19639 4.21277 4.23650 4.30214 4.34563 4.39969 4.46146 4.47653 4.50416 4.56113 4.60786 4.70005 4.73648 4.78623 4.82080 4.84847 4.89694 4.94566 5.00273 5.02681 5.05160 5.09541 5.13455 5.18315 5.28295 5.28794 5.36829 5.41193 5.51185 5.55775 5.65943 5.86961 6.13082 6.19081 6.70204 6.74440 6.93057 7.30248 7.63947 8.03883 9.04587 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015350 B = 0.002806 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.634322 B = 9974.587061 C =10489.189787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.008 4.008 3 H 0.131 0.869 4 C 0.521 3.479 5 O -0.592 6.592 6 N -0.616 5.616 7 C 0.097 3.903 8 C -0.112 4.112 9 C -0.079 4.079 10 C 0.133 3.867 11 C -0.083 4.083 12 C -0.134 4.134 13 C 0.121 3.879 14 N -0.619 5.619 15 C -0.241 4.241 16 H 0.044 0.956 17 C -0.043 4.043 18 N -0.964 5.964 19 Si 0.954 3.046 20 H -0.283 1.283 21 H -0.314 1.314 22 H -0.248 1.248 23 C 0.161 3.839 24 C -0.245 4.245 25 C 0.064 3.936 26 N -0.347 5.347 27 N -0.383 5.383 28 C 0.094 3.906 29 C 0.074 3.926 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.033 0.967 43 H 0.044 0.956 44 H 0.037 0.963 45 H 0.260 0.740 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.163 0.837 49 H 0.091 0.909 50 H 0.081 0.919 51 H 0.117 0.883 52 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.370 21.992 23.375 32.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.030 4.030 3 H 0.149 0.851 4 C 0.311 3.689 5 O -0.472 6.472 6 N -0.349 5.349 7 C -0.024 4.024 8 C -0.150 4.150 9 C -0.081 4.081 10 C 0.010 3.990 11 C -0.120 4.120 12 C -0.173 4.173 13 C -0.004 4.004 14 N -0.344 5.344 15 C -0.371 4.371 16 H 0.062 0.938 17 C -0.237 4.237 18 N -0.611 5.611 19 Si 0.783 3.217 20 H -0.210 1.210 21 H -0.243 1.243 22 H -0.171 1.171 23 C 0.036 3.964 24 C -0.257 4.257 25 C -0.121 4.121 26 N -0.169 5.169 27 N -0.164 5.164 28 C -0.046 4.046 29 C -0.073 4.073 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.134 0.866 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.180 0.820 49 H 0.110 0.890 50 H 0.100 0.900 51 H 0.135 0.865 52 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -5.860 20.363 24.454 32.357 hybrid contribution 0.678 -0.907 -1.590 1.952 sum -5.182 19.456 22.864 30.466 Atomic orbital electron populations 1.21707 0.91014 1.02224 1.03950 1.19457 0.97891 0.99567 0.86093 0.85087 1.21182 0.76846 0.86581 0.84306 1.90695 1.52941 1.18326 1.85279 1.48762 1.61173 1.14541 1.10417 1.22421 1.01764 0.80290 0.97940 1.22692 0.97801 0.99329 0.95134 1.21524 0.96747 0.94400 0.95417 1.21840 0.95871 0.96543 0.84739 1.21177 0.92018 0.97663 1.01122 1.22012 1.00277 0.99107 0.95933 1.21393 0.86742 0.97932 0.94341 1.44473 1.05462 1.22750 1.61683 1.18791 0.97964 0.99619 1.20717 0.93843 1.25984 1.01796 0.96875 0.99057 1.69997 1.35618 1.12798 1.42683 0.85780 0.79577 0.80627 0.75695 1.21007 1.24328 1.17144 1.20941 0.90356 0.92540 0.92577 1.19766 1.10332 0.95151 1.00479 1.23684 0.98518 0.96931 0.93005 1.77302 1.15245 1.07897 1.16500 1.48811 1.39876 1.07576 1.20174 1.22191 0.95024 1.04820 0.82572 1.22921 0.98024 0.97018 0.89362 0.94198 0.89139 0.90661 0.89033 0.88232 0.89906 0.86551 0.94480 0.94851 0.89538 0.90755 0.90304 0.94832 0.93825 0.94495 0.93152 0.93156 0.92981 0.81965 0.89018 0.90040 0.86467 0.76354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.09 71.98 0.65 -1.30 16 2 C -0.01 -0.14 2.57 -12.29 -0.03 -0.18 16 3 H 0.13 1.34 7.19 -2.39 -0.02 1.32 16 4 C 0.52 15.16 6.93 87.66 0.61 15.77 16 5 O -0.59 -24.45 15.53 -3.02 -0.05 -24.50 16 6 N -0.62 -16.03 3.32 -812.57 -2.70 -18.73 16 7 C 0.10 1.39 5.95 86.77 0.52 1.90 16 8 C -0.11 -1.79 5.91 31.63 0.19 -1.61 16 9 C -0.08 -2.15 0.55 -51.83 -0.03 -2.18 16 10 C 0.13 4.63 5.61 86.55 0.49 5.12 16 11 C -0.08 -2.08 4.64 30.36 0.14 -1.94 16 12 C -0.13 -4.58 5.91 30.72 0.18 -4.39 16 13 C 0.12 5.08 4.17 86.36 0.36 5.45 16 14 N -0.62 -28.90 2.67 -700.49 -1.87 -30.77 16 15 C -0.24 -14.07 10.05 84.03 0.84 -13.22 16 16 H 0.04 2.82 8.06 -2.91 -0.02 2.80 16 17 C -0.04 -2.62 5.25 84.86 0.45 -2.17 16 18 N -0.96 -63.48 13.97 21.65 0.30 -63.18 16 19 Si 0.95 47.76 24.36 68.60 1.67 49.43 16 20 H -0.28 -13.65 6.71 99.48 0.67 -12.99 16 21 H -0.31 -16.04 7.11 99.48 0.71 -15.33 16 22 H -0.25 -11.36 6.45 99.48 0.64 -10.72 16 23 C 0.16 5.72 5.21 86.01 0.45 6.17 16 24 C -0.25 -5.48 4.63 -20.15 -0.09 -5.58 16 25 C 0.06 1.85 10.42 85.24 0.89 2.74 16 26 N -0.35 -10.07 12.58 -57.02 -0.72 -10.79 16 27 N -0.38 -7.66 4.01 -369.57 -1.48 -9.14 16 28 C 0.09 0.92 11.47 127.77 1.47 2.38 16 29 C 0.07 1.22 11.38 83.54 0.95 2.18 16 30 H 0.04 0.78 7.94 -2.38 -0.02 0.76 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.91 7.24 -2.39 -0.02 0.89 16 33 H 0.09 0.92 7.24 -2.39 -0.02 0.90 16 34 H 0.10 0.82 7.67 -2.39 -0.02 0.80 16 35 H 0.08 1.31 8.01 -2.38 -0.02 1.29 16 36 H 0.12 1.17 8.01 -2.38 -0.02 1.15 16 37 H 0.04 1.63 6.07 -2.39 -0.01 1.61 16 38 H 0.03 1.34 7.87 -2.39 -0.02 1.32 16 39 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 1.60 7.85 -2.39 -0.02 1.58 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.03 1.35 6.33 -2.38 -0.02 1.34 16 43 H 0.04 1.69 7.02 -2.39 -0.02 1.68 16 44 H 0.04 1.79 4.48 -2.39 -0.01 1.78 16 45 H 0.26 16.24 8.31 -92.72 -0.77 15.47 16 46 H 0.05 1.91 7.75 -2.39 -0.02 1.89 16 47 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.16 5.04 7.93 -2.91 -0.02 5.02 16 49 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 52 H 0.22 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -90.28 396.47 3.98 -86.29 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.80 Total: 12.25 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 8.02 Total: 9.14 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -6.46 Total: -132.61 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.05 Total: -24.50 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 1.67 Total: 49.43 kcal Total: -90.28 3.98 -86.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040554432.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.926 kcal (2) G-P(sol) polarization free energy of solvation -90.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds