Wall clock time and date at job start Wed Apr 1 2020 04:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46831 * 2 1 4 4 C 1.53000 * 109.47389 * 240.00396 * 2 1 3 5 5 C 1.50696 * 109.47680 * 64.99597 * 4 2 1 6 6 O 1.21283 * 119.99444 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00204 * 180.02562 * 5 4 2 8 8 C 1.47081 * 125.62815 * 0.02600 * 7 5 4 9 9 C 1.54464 * 107.29445 * 179.00940 * 8 7 5 10 10 C 1.54392 * 102.87164 * 338.50063 * 9 8 7 11 11 C 1.47572 * 125.62619 * 180.02562 * 7 5 4 12 12 C 1.52103 * 110.51634 * 276.65413 * 10 9 8 13 13 C 1.53340 * 109.45369 * 295.89056 * 12 10 9 14 14 N 1.46931 * 108.69130 * 306.71268 * 13 12 10 15 15 C 1.36937 * 120.55656 * 234.31934 * 14 13 12 16 16 H 1.07996 * 119.99458 * 27.98982 * 15 14 13 17 17 C 1.38806 * 120.00160 * 207.98707 * 15 14 13 18 18 N 1.31614 * 120.00216 * 17.46774 * 17 15 14 19 19 Si 1.86803 * 120.00037 * 197.46363 * 17 15 14 20 20 H 1.48495 * 109.47283 * 90.00077 * 19 17 15 21 21 H 1.48496 * 109.47099 * 210.00412 * 19 17 15 22 22 H 1.48508 * 109.47059 * 330.00071 * 19 17 15 23 23 C 1.46942 * 118.89097 * 54.34521 * 14 13 12 24 24 C 1.52110 * 110.50148 * 152.62904 * 10 9 8 25 25 N 1.46500 * 109.47153 * 120.00031 * 2 1 3 26 26 C 1.36879 * 126.39584 * 240.00403 * 25 2 1 27 27 C 1.34668 * 106.81809 * 179.97438 * 26 25 2 28 28 N 1.34125 * 108.01881 * 359.97438 * 27 26 25 29 29 C 1.30503 * 109.25715 * 359.72691 * 28 27 26 30 30 H 1.09004 * 109.47074 * 60.00586 * 1 2 3 31 31 H 1.08998 * 109.46738 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47718 * 299.99771 * 1 2 3 33 33 H 1.09002 * 109.46586 * 304.99541 * 4 2 1 34 34 H 1.08999 * 109.47001 * 185.00100 * 4 2 1 35 35 H 1.08996 * 109.87524 * 59.58699 * 8 7 5 36 36 H 1.08994 * 110.00286 * 298.50605 * 8 7 5 37 37 H 1.09000 * 110.72864 * 220.15710 * 9 8 7 38 38 H 1.08996 * 110.73178 * 96.85027 * 9 8 7 39 39 H 1.08999 * 110.37556 * 84.49583 * 11 7 5 40 40 H 1.09000 * 110.37555 * 322.14707 * 11 7 5 41 41 H 1.09004 * 109.47764 * 55.88636 * 12 10 9 42 42 H 1.09003 * 109.47244 * 175.89689 * 12 10 9 43 43 H 1.08995 * 109.60496 * 186.94630 * 13 12 10 44 44 H 1.09008 * 109.59738 * 66.47256 * 13 12 10 45 45 H 0.96998 * 120.00763 * 179.97438 * 18 17 15 46 46 H 1.08992 * 109.60211 * 185.88124 * 23 14 13 47 47 H 1.09000 * 109.73229 * 65.47917 * 23 14 13 48 48 H 1.09003 * 109.47295 * 184.09633 * 24 10 9 49 49 H 1.08997 * 109.47331 * 304.09930 * 24 10 9 50 50 H 1.08006 * 126.59102 * 0.03519 * 26 25 2 51 51 H 1.08000 * 125.99304 * 179.97438 * 27 26 25 52 52 H 1.08001 * 125.65142 * 180.29556 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6414 0.0571 -2.4766 6 8 1.0117 1.0874 -2.3633 7 7 1.9846 -0.3919 -3.7002 8 6 2.7433 -1.6204 -3.9804 9 6 2.8752 -1.7387 -5.5148 10 6 1.7143 -0.8600 -6.0286 11 6 1.6612 0.2680 -4.9799 12 6 0.4131 -1.6476 -6.0373 13 6 0.5247 -2.8074 -7.0341 14 7 0.9421 -2.2704 -8.3365 15 6 0.2085 -2.5287 -9.4635 16 1 -0.8531 -2.7118 -9.3865 17 6 0.8291 -2.5551 -10.7048 18 7 2.1372 -2.6774 -10.7841 19 14 -0.1921 -2.4172 -12.2629 20 1 -0.3303 -0.9874 -12.6392 21 1 0.4798 -3.1557 -13.3621 22 1 -1.5378 -2.9990 -12.0258 23 6 2.1603 -1.4519 -8.4095 24 6 2.0390 -0.2998 -7.4050 25 7 2.0183 -0.6906 1.1962 26 6 2.8084 -0.1553 2.1774 27 6 3.0182 -1.1293 3.0834 28 7 2.3733 -2.2292 2.6670 29 6 1.7671 -1.9720 1.5403 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8899 33 1 1.6055 -1.7197 -1.2951 34 1 3.1264 -0.7994 -1.2055 35 1 2.2080 -2.4844 -3.5867 36 1 3.7325 -1.5592 -3.5269 37 1 2.7471 -2.7729 -5.8344 38 1 3.8347 -1.3458 -5.8510 39 1 2.4013 1.0346 -5.2093 40 1 0.6625 0.7031 -4.9407 41 1 0.2208 -2.0430 -5.0398 42 1 -0.4064 -0.9922 -6.3326 43 1 -0.4434 -3.2981 -7.1342 44 1 1.2656 -3.5241 -6.6796 45 1 2.5710 -2.6963 -11.6515 46 1 2.2705 -1.0492 -9.4163 47 1 3.0291 -2.0623 -8.1628 48 1 1.2426 0.3746 -7.7199 49 1 2.9815 0.2459 -7.3621 50 1 3.1894 0.8545 2.2178 51 1 3.6031 -1.0405 3.9869 52 1 1.1664 -2.6694 0.9751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040868738.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:57 Heat of formation + Delta-G solvation = 49.700877 kcal Electronic energy + Delta-G solvation = -31140.984898 eV Core-core repulsion = 27142.011972 eV Total energy + Delta-G solvation = -3998.972926 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.37437 -40.62384 -38.93550 -36.21505 -35.70996 -33.24146 -31.43747 -30.98787 -30.12914 -29.60322 -29.46282 -28.65871 -26.74339 -24.30193 -23.57735 -23.02258 -22.31729 -21.61807 -21.06900 -20.53336 -19.36900 -18.19314 -17.88052 -16.86945 -16.50964 -16.27429 -15.75618 -15.36792 -15.16870 -14.92581 -14.40156 -14.31101 -14.02542 -13.94476 -13.66992 -13.62028 -13.55212 -13.29353 -13.17410 -12.89690 -12.84700 -12.45765 -12.33589 -12.06787 -11.90123 -11.69783 -11.56647 -11.38238 -11.16809 -10.82752 -10.76214 -10.54371 -10.33616 -10.22543 -10.18861 -10.09005 -9.92204 -9.88879 -9.62806 -9.49119 -8.78013 -8.74554 -8.50940 -6.72501 -5.84588 -3.26706 1.78916 2.30329 2.37283 2.92471 2.94862 3.34199 3.41787 3.42339 4.02174 4.19004 4.31298 4.45085 4.45865 4.59757 4.61721 4.66418 4.82113 4.90997 5.03428 5.05772 5.16678 5.18606 5.28558 5.32355 5.33671 5.40187 5.44765 5.47926 5.57738 5.70643 5.80773 5.82361 5.84777 5.93612 6.03511 6.06401 6.07390 6.18320 6.25580 6.43946 6.47828 6.54816 6.58795 6.64623 6.76606 6.89516 6.90731 7.28589 7.35867 7.59379 7.75013 7.82873 7.90897 8.39805 9.16105 9.79364 10.35300 11.23696 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.028212 B = 0.002028 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.230147 B =13801.793181 C =13912.381484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.109 0.891 4 C -0.148 4.148 5 C 0.533 3.467 6 O -0.544 6.544 7 N -0.609 5.609 8 C 0.099 3.901 9 C -0.123 4.123 10 C -0.055 4.055 11 C 0.113 3.887 12 C -0.116 4.116 13 C 0.147 3.853 14 N -0.591 5.591 15 C -0.252 4.252 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.901 3.099 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.173 3.827 24 C -0.127 4.127 25 N -0.454 5.454 26 C -0.055 4.055 27 C -0.033 4.033 28 N -0.497 5.497 29 C 0.182 3.818 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.019 0.981 45 H 0.254 0.746 46 H 0.088 0.912 47 H 0.020 0.980 48 H 0.058 0.942 49 H 0.051 0.949 50 H 0.172 0.828 51 H 0.168 0.832 52 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.624 5.024 20.906 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.046 3.954 3 H 0.127 0.873 4 C -0.189 4.189 5 C 0.321 3.679 6 O -0.422 6.422 7 N -0.342 5.342 8 C -0.024 4.024 9 C -0.160 4.160 10 C -0.056 4.056 11 C -0.009 4.009 12 C -0.156 4.156 13 C 0.020 3.980 14 N -0.313 5.313 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.731 3.269 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.047 3.953 24 C -0.166 4.166 25 N -0.136 5.136 26 C -0.189 4.189 27 C -0.181 4.181 28 N -0.215 5.215 29 C -0.100 4.100 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.037 0.963 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.038 0.962 48 H 0.077 0.923 49 H 0.070 0.930 50 H 0.190 0.810 51 H 0.185 0.815 52 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.306 4.879 21.166 21.843 hybrid contribution -0.276 0.797 -1.272 1.527 sum 2.030 5.677 19.893 20.787 Atomic orbital electron populations 1.22301 0.92230 1.03159 1.04775 1.21158 0.96351 0.96811 0.81067 0.87316 1.21977 1.03799 1.00932 0.92174 1.19778 0.79495 0.85405 0.83272 1.90695 1.40763 1.24782 1.85987 1.48565 1.54662 1.25286 1.05709 1.22188 0.95385 0.86554 0.98274 1.22711 0.99181 1.02489 0.91645 1.21005 0.95801 0.93951 0.94826 1.22427 1.01288 0.95670 0.81472 1.21823 0.95641 0.99161 0.98931 1.20941 0.97910 0.92537 0.86602 1.44042 1.28092 1.56544 1.02654 1.19186 0.90663 1.43657 0.84690 0.91740 1.25024 0.95672 1.00699 0.98212 1.70017 1.07972 1.53086 1.23604 0.86304 0.79616 0.77746 0.83192 1.21447 1.21782 1.20453 1.20787 0.87797 0.88910 0.97806 1.22047 0.99987 1.00385 0.94221 1.45795 1.37842 1.11584 1.18421 1.22780 1.02497 1.01320 0.92254 1.22303 1.04811 0.89599 1.01393 1.70313 1.12309 1.28181 1.10671 1.24899 1.03732 0.85491 0.95919 0.88256 0.92070 0.91825 0.87976 0.88169 0.91367 0.91656 0.88952 0.90608 0.91553 0.90501 0.93311 0.92171 0.92854 0.96342 0.93623 0.89401 0.96215 0.92339 0.93014 0.81045 0.81483 0.78262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 8.98 37.16 0.33 -1.01 16 2 C 0.15 1.17 2.70 -67.93 -0.18 0.98 16 3 H 0.11 0.89 7.90 -51.93 -0.41 0.48 16 4 C -0.15 -1.14 4.37 -27.88 -0.12 -1.26 16 5 C 0.53 5.90 7.57 -10.99 -0.08 5.81 16 6 O -0.54 -7.58 14.23 5.55 0.08 -7.50 16 7 N -0.61 -6.94 3.32 -170.77 -0.57 -7.50 16 8 C 0.10 0.97 6.11 -2.96 -0.02 0.96 16 9 C -0.12 -1.53 4.92 -25.23 -0.12 -1.65 16 10 C -0.05 -0.79 0.55 -154.11 -0.08 -0.87 16 11 C 0.11 1.48 5.81 -2.87 -0.02 1.47 16 12 C -0.12 -1.82 4.85 -27.01 -0.13 -1.95 16 13 C 0.15 2.79 6.21 -3.63 -0.02 2.77 16 14 N -0.59 -13.76 2.98 -172.13 -0.51 -14.27 16 15 C -0.25 -6.63 9.57 -15.06 -0.14 -6.77 16 16 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 17 C 0.00 0.07 4.90 -17.44 -0.09 -0.02 16 18 N -0.90 -25.16 11.20 55.49 0.62 -24.54 16 19 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.17 3.76 5.05 -3.63 -0.02 3.74 16 24 C -0.13 -2.15 4.84 -27.01 -0.13 -2.28 16 25 N -0.45 -3.79 2.62 -111.46 -0.29 -4.08 16 26 C -0.06 -0.46 11.54 -16.56 -0.19 -0.65 16 27 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 28 N -0.50 -5.72 11.25 -14.67 -0.17 -5.88 16 29 C 0.18 1.68 11.65 -90.38 -1.05 0.63 16 30 H 0.10 0.99 5.95 -51.93 -0.31 0.68 16 31 H 0.06 0.43 7.94 -51.93 -0.41 0.02 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.66 8.09 -51.93 -0.42 0.24 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.27 6.18 -51.93 -0.32 0.95 16 38 H 0.08 0.93 7.98 -51.93 -0.41 0.51 16 39 H 0.07 0.86 7.99 -51.93 -0.41 0.44 16 40 H 0.08 1.10 7.94 -51.93 -0.41 0.68 16 41 H 0.05 0.68 7.82 -51.93 -0.41 0.27 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 44 H 0.02 0.35 6.55 -51.92 -0.34 0.01 16 45 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 46 H 0.09 2.21 6.01 -51.93 -0.31 1.90 16 47 H 0.02 0.44 7.62 -51.93 -0.40 0.05 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 49 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 50 H 0.17 0.97 8.06 -52.48 -0.42 0.54 16 51 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 52 H 0.20 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 401.21 15.07 6.05 6.05 Total: -1.00 -31.18 401.21 -10.86 -42.04 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.75 Total: 0.23 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -2.29 Total: -0.63 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.92 Total: -56.28 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.08 Total: -7.50 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.18 -10.86 -42.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040868738.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.739 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds