Wall clock time and date at job start Wed Apr 1 2020 04:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46665 * 2 1 4 4 C 1.53005 * 109.47019 * 119.99533 * 2 1 3 5 5 C 1.50693 * 109.47483 * 295.00350 * 4 2 1 6 6 O 1.21288 * 120.00166 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00281 * 179.97438 * 5 4 2 8 8 C 1.47478 * 125.65778 * 359.97438 * 7 5 4 9 9 C 1.55020 * 104.90057 * 204.01696 * 8 7 5 10 10 C 1.54537 * 101.52430 * 323.61784 * 9 8 7 11 11 C 1.47177 * 125.66523 * 179.97438 * 7 5 4 12 12 C 1.52272 * 110.16112 * 276.40041 * 10 9 8 13 13 C 1.53320 * 109.41509 * 297.17718 * 12 10 9 14 14 N 1.46931 * 108.70567 * 306.48705 * 13 12 10 15 15 C 1.36935 * 120.56171 * 234.21008 * 14 13 12 16 16 H 1.08001 * 120.00093 * 27.93853 * 15 14 13 17 17 C 1.38813 * 119.99654 * 207.94395 * 15 14 13 18 18 N 1.31619 * 120.00190 * 17.46127 * 17 15 14 19 19 Si 1.86802 * 119.99783 * 197.45293 * 17 15 14 20 20 H 1.48496 * 109.47048 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46896 * 120.00037 * 19 17 15 22 22 H 1.48493 * 109.47352 * 240.00169 * 19 17 15 23 23 C 1.46935 * 118.87509 * 54.23162 * 14 13 12 24 24 C 1.52275 * 110.15615 * 153.27884 * 10 9 8 25 25 N 1.46500 * 109.47442 * 240.00133 * 2 1 3 26 26 C 1.34944 * 126.03441 * 324.71469 * 25 2 1 27 27 C 1.35317 * 107.74766 * 179.83819 * 26 25 2 28 28 C 1.39874 * 107.91739 * 0.42604 * 27 26 25 29 29 N 1.30847 * 108.20055 * 359.73360 * 28 27 26 30 30 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47709 * 300.00026 * 1 2 3 32 32 H 1.09000 * 109.47448 * 60.00179 * 1 2 3 33 33 H 1.09005 * 109.46488 * 175.00046 * 4 2 1 34 34 H 1.09002 * 109.46683 * 55.00490 * 4 2 1 35 35 H 1.09006 * 110.35632 * 85.16013 * 8 7 5 36 36 H 1.08998 * 110.35515 * 322.87525 * 8 7 5 37 37 H 1.08997 * 111.01829 * 205.55816 * 9 8 7 38 38 H 1.09002 * 111.01449 * 81.67778 * 9 8 7 39 39 H 1.09010 * 109.90560 * 59.13228 * 11 7 5 40 40 H 1.09006 * 110.06256 * 297.96513 * 11 7 5 41 41 H 1.09004 * 109.48001 * 57.15593 * 12 10 9 42 42 H 1.08995 * 109.48589 * 177.19189 * 12 10 9 43 43 H 1.09002 * 109.59943 * 186.72238 * 13 12 10 44 44 H 1.08993 * 109.59790 * 66.25750 * 13 12 10 45 45 H 0.97002 * 119.99750 * 179.97438 * 18 17 15 46 46 H 1.08993 * 109.59835 * 185.99932 * 23 14 13 47 47 H 1.09006 * 109.72732 * 65.60170 * 23 14 13 48 48 H 1.09001 * 109.47779 * 182.79613 * 24 10 9 49 49 H 1.08998 * 109.47925 * 302.82477 * 24 10 9 50 50 H 1.08007 * 126.12823 * 359.97438 * 26 25 2 51 51 H 1.07996 * 126.04307 * 180.15198 * 27 26 25 52 52 H 1.07998 * 125.89887 * 179.71748 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0108 1.0870 2.3634 7 7 1.9844 -0.3918 3.7003 8 6 2.7450 -1.6235 3.9821 9 6 2.3517 -2.0123 5.4303 10 6 2.2211 -0.6247 6.0978 11 6 1.6622 0.2657 4.9770 12 6 3.5884 -0.1278 6.5476 13 6 4.1530 -1.0799 7.6085 14 7 3.1605 -1.2318 8.6813 15 6 3.5015 -0.9883 9.9849 16 1 4.2896 -0.2865 10.2149 17 6 2.8345 -1.6436 11.0108 18 7 2.1332 -2.7273 10.7532 19 14 2.9322 -0.9876 12.7571 20 1 3.7767 0.2336 12.7806 21 1 1.5671 -0.6542 13.2377 22 1 3.5297 -2.0203 13.6412 23 6 1.7960 -1.6499 8.3316 24 6 1.2468 -0.6940 7.2661 25 7 2.0184 -0.6906 -1.1962 26 6 1.4433 -1.7592 -1.7863 27 6 2.1964 -2.0924 -2.8600 28 6 3.2739 -1.2028 -2.9227 29 7 3.1682 -0.3620 -1.9257 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.1263 -0.7993 1.2056 34 1 1.6054 -1.7198 1.2952 35 1 3.8160 -1.4306 3.9189 36 1 2.4595 -2.4129 3.2868 37 1 3.1370 -2.6014 5.9038 38 1 1.4011 -2.5453 5.4474 39 1 0.5815 0.3613 5.0829 40 1 2.1276 1.2506 5.0183 41 1 4.2631 -0.0959 5.6920 42 1 3.4908 0.8717 6.9712 43 1 5.0740 -0.6657 8.0186 44 1 4.3554 -2.0513 7.1574 45 1 1.6674 -3.1853 11.4702 46 1 1.1633 -1.6115 9.2182 47 1 1.8121 -2.6662 7.9376 48 1 1.1251 0.2997 7.6973 49 1 0.2819 -1.0581 6.9135 50 1 0.5419 -2.2577 -1.4614 51 1 2.0024 -2.9047 -3.5448 52 1 4.0579 -1.2090 -3.6654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040904249.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:43 Heat of formation + Delta-G solvation = 66.564437 kcal Electronic energy + Delta-G solvation = -30991.154214 eV Core-core repulsion = 26992.912547 eV Total energy + Delta-G solvation = -3998.241667 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.50700 -40.52724 -38.88504 -36.10629 -35.47385 -33.21952 -31.16792 -30.58495 -30.15745 -30.04697 -29.43304 -28.57132 -26.67826 -24.27559 -23.55875 -23.05849 -22.24947 -21.31926 -20.99896 -20.23823 -19.31456 -18.19825 -17.78405 -16.83223 -16.40170 -16.24259 -16.00068 -15.09017 -14.92823 -14.80165 -14.69823 -14.05407 -14.01504 -13.74235 -13.58895 -13.54818 -13.18851 -13.16443 -12.98678 -12.86430 -12.68270 -12.45169 -12.35558 -11.99511 -11.81607 -11.55665 -11.54142 -11.34870 -11.17017 -10.92211 -10.83379 -10.72760 -10.50557 -10.31458 -10.15329 -10.03347 -9.88810 -9.69750 -9.58834 -9.44821 -8.87645 -8.71240 -8.49296 -6.70925 -5.83471 -3.25207 1.63062 2.11971 2.43422 2.60531 2.94720 3.34138 3.42743 3.44662 4.11154 4.28359 4.32199 4.46255 4.55354 4.64428 4.68738 4.75851 4.86634 4.99400 5.07442 5.09421 5.23162 5.30203 5.34516 5.35561 5.40401 5.42273 5.46986 5.59685 5.60852 5.71572 5.75050 5.83035 5.85669 5.92456 6.01532 6.06921 6.14152 6.17129 6.28591 6.39330 6.46489 6.57947 6.61235 6.67378 6.75715 6.78514 6.91524 7.30736 7.41165 7.46951 7.61154 7.76486 7.97616 8.41032 9.17404 9.80821 10.36788 11.24879 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.030034 B = 0.001974 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.067362 B =14184.241801 C =14389.746714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.176 3.824 3 H 0.111 0.889 4 C -0.149 4.149 5 C 0.533 3.467 6 O -0.544 6.544 7 N -0.610 5.610 8 C 0.097 3.903 9 C -0.123 4.123 10 C -0.055 4.055 11 C 0.116 3.884 12 C -0.120 4.120 13 C 0.146 3.854 14 N -0.591 5.591 15 C -0.251 4.251 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.291 1.291 23 C 0.173 3.827 24 C -0.127 4.127 25 N -0.366 5.366 26 C 0.055 3.945 27 C -0.278 4.278 28 C 0.042 3.958 29 N -0.297 5.297 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.020 0.980 45 H 0.253 0.747 46 H 0.088 0.912 47 H 0.020 0.980 48 H 0.058 0.942 49 H 0.050 0.950 50 H 0.171 0.829 51 H 0.146 0.854 52 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.077 -0.245 -23.508 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.074 3.926 3 H 0.129 0.871 4 C -0.190 4.190 5 C 0.321 3.679 6 O -0.422 6.422 7 N -0.344 5.344 8 C -0.026 4.026 9 C -0.161 4.161 10 C -0.056 4.056 11 C -0.006 4.006 12 C -0.159 4.159 13 C 0.020 3.980 14 N -0.313 5.313 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.730 3.270 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.218 1.218 23 C 0.047 3.953 24 C -0.166 4.166 25 N -0.148 5.148 26 C -0.091 4.091 27 C -0.307 4.307 28 C -0.144 4.144 29 N -0.118 5.118 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.038 0.962 48 H 0.076 0.924 49 H 0.069 0.931 50 H 0.188 0.812 51 H 0.164 0.836 52 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.039 1.318 -22.798 22.927 hybrid contribution -0.293 -0.639 0.472 0.846 sum -2.331 0.679 -22.326 22.457 Atomic orbital electron populations 1.22326 0.92084 1.03027 1.05135 1.20945 0.95317 0.96945 0.79401 0.87075 1.22043 1.04076 1.00642 0.92250 1.19822 0.79482 0.85400 0.83229 1.90690 1.40786 1.24728 1.86025 1.48590 1.54739 1.25422 1.05606 1.22499 0.96078 0.85847 0.98185 1.22882 1.03018 0.97592 0.92569 1.20980 0.97113 0.93636 0.93875 1.22165 1.00432 0.96486 0.81559 1.21935 0.94509 1.00639 0.98799 1.20950 0.92621 0.95215 0.89253 1.44046 1.05304 1.79765 1.02233 1.19222 1.18968 1.18058 0.81840 0.91703 1.25026 1.01142 0.95496 0.98000 1.70034 1.36075 1.16954 1.31627 0.86253 0.77433 0.78410 0.84866 1.20269 1.21569 1.21757 1.20786 0.86439 0.92467 0.95605 1.22118 0.96170 1.02183 0.96137 1.48967 1.19458 1.23887 1.22531 1.22525 0.99958 0.91178 0.95425 1.21518 0.99466 1.06591 1.03150 1.23904 0.99289 0.93982 0.97256 1.77405 1.02786 1.23897 1.07705 0.92097 0.87862 0.91595 0.88070 0.88335 0.91096 0.91027 0.88767 0.90714 0.91424 0.91521 0.93155 0.92036 0.92815 0.96268 0.93698 0.89431 0.96218 0.92372 0.93088 0.81166 0.83641 0.80148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 8.58 37.16 0.32 -1.08 16 2 C 0.18 1.69 3.05 -67.93 -0.21 1.49 16 3 H 0.11 1.25 7.96 -51.93 -0.41 0.84 16 4 C -0.15 -1.38 4.51 -27.88 -0.13 -1.50 16 5 C 0.53 6.51 7.57 -10.99 -0.08 6.42 16 6 O -0.54 -8.16 14.29 5.55 0.08 -8.08 16 7 N -0.61 -7.52 3.33 -170.68 -0.57 -8.09 16 8 C 0.10 1.03 6.37 -2.44 -0.02 1.01 16 9 C -0.12 -1.60 4.92 -24.86 -0.12 -1.73 16 10 C -0.06 -0.82 0.55 -154.10 -0.09 -0.91 16 11 C 0.12 1.61 6.05 -3.32 -0.02 1.59 16 12 C -0.12 -1.90 4.74 -26.94 -0.13 -2.03 16 13 C 0.15 2.81 6.19 -3.64 -0.02 2.79 16 14 N -0.59 -13.89 2.98 -172.16 -0.51 -14.40 16 15 C -0.25 -6.65 9.57 -15.06 -0.14 -6.79 16 16 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 17 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 18 N -0.90 -25.33 11.20 55.49 0.62 -24.71 16 19 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 C 0.17 3.82 5.03 -3.64 -0.02 3.80 16 24 C -0.13 -2.21 4.72 -26.94 -0.13 -2.34 16 25 N -0.37 -3.67 3.52 -54.86 -0.19 -3.86 16 26 C 0.06 0.45 10.59 -17.22 -0.18 0.27 16 27 C -0.28 -2.23 10.80 -40.01 -0.43 -2.66 16 28 C 0.04 0.38 12.03 -17.36 -0.21 0.17 16 29 N -0.30 -3.45 12.58 30.63 0.39 -3.07 16 30 H 0.06 0.40 7.16 -51.93 -0.37 0.03 16 31 H 0.10 1.05 5.95 -51.93 -0.31 0.74 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 0.75 7.85 -51.93 -0.41 0.34 16 35 H 0.07 0.72 7.74 -51.93 -0.40 0.32 16 36 H 0.07 0.61 7.48 -51.93 -0.39 0.22 16 37 H 0.09 1.34 6.08 -51.93 -0.32 1.02 16 38 H 0.07 0.97 8.01 -51.93 -0.42 0.56 16 39 H 0.07 0.97 7.78 -51.92 -0.40 0.57 16 40 H 0.07 0.97 7.83 -51.93 -0.41 0.57 16 41 H 0.05 0.71 7.47 -51.93 -0.39 0.32 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 44 H 0.02 0.37 6.47 -51.93 -0.34 0.03 16 45 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 46 H 0.09 2.23 6.02 -51.93 -0.31 1.92 16 47 H 0.02 0.45 7.56 -51.93 -0.39 0.06 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 49 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16 50 H 0.17 0.89 7.27 -52.48 -0.38 0.51 16 51 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 52 H 0.18 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 398.53 15.07 6.01 6.01 Total: -1.00 -31.21 398.53 -9.47 -40.67 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.56 Total: 0.85 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.69 Total: -1.53 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.27 Total: -54.13 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.08 Total: -8.08 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.21 -9.47 -40.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040904249.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.238 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds