Wall clock time and date at job start Wed Apr 1 2020 04:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46665 * 2 1 4 4 C 1.53005 * 109.47019 * 119.99533 * 2 1 3 5 5 C 1.50693 * 109.47483 * 295.00350 * 4 2 1 6 6 O 1.21288 * 120.00166 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00281 * 179.97438 * 5 4 2 8 8 C 1.47478 * 125.65778 * 359.97438 * 7 5 4 9 9 C 1.55020 * 104.90057 * 204.01696 * 8 7 5 10 10 C 1.54537 * 101.52430 * 323.61784 * 9 8 7 11 11 C 1.47177 * 125.66523 * 179.97438 * 7 5 4 12 12 C 1.52272 * 110.16112 * 276.40041 * 10 9 8 13 13 C 1.53320 * 109.41509 * 297.17718 * 12 10 9 14 14 N 1.46931 * 108.70567 * 306.48705 * 13 12 10 15 15 C 1.36935 * 120.56171 * 234.21008 * 14 13 12 16 16 H 1.08001 * 120.00093 * 27.93853 * 15 14 13 17 17 C 1.38813 * 119.99654 * 207.94395 * 15 14 13 18 18 N 1.31619 * 120.00190 * 17.46127 * 17 15 14 19 19 Si 1.86802 * 119.99783 * 197.45293 * 17 15 14 20 20 H 1.48496 * 109.47048 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46896 * 120.00037 * 19 17 15 22 22 H 1.48493 * 109.47352 * 240.00169 * 19 17 15 23 23 C 1.46935 * 118.87509 * 54.23162 * 14 13 12 24 24 C 1.52275 * 110.15615 * 153.27884 * 10 9 8 25 25 N 1.46500 * 109.47442 * 240.00133 * 2 1 3 26 26 C 1.34944 * 126.03441 * 324.71469 * 25 2 1 27 27 C 1.35317 * 107.74766 * 179.83819 * 26 25 2 28 28 C 1.39874 * 107.91739 * 0.42604 * 27 26 25 29 29 N 1.30847 * 108.20055 * 359.73360 * 28 27 26 30 30 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47709 * 300.00026 * 1 2 3 32 32 H 1.09000 * 109.47448 * 60.00179 * 1 2 3 33 33 H 1.09005 * 109.46488 * 175.00046 * 4 2 1 34 34 H 1.09002 * 109.46683 * 55.00490 * 4 2 1 35 35 H 1.09006 * 110.35632 * 85.16013 * 8 7 5 36 36 H 1.08998 * 110.35515 * 322.87525 * 8 7 5 37 37 H 1.08997 * 111.01829 * 205.55816 * 9 8 7 38 38 H 1.09002 * 111.01449 * 81.67778 * 9 8 7 39 39 H 1.09010 * 109.90560 * 59.13228 * 11 7 5 40 40 H 1.09006 * 110.06256 * 297.96513 * 11 7 5 41 41 H 1.09004 * 109.48001 * 57.15593 * 12 10 9 42 42 H 1.08995 * 109.48589 * 177.19189 * 12 10 9 43 43 H 1.09002 * 109.59943 * 186.72238 * 13 12 10 44 44 H 1.08993 * 109.59790 * 66.25750 * 13 12 10 45 45 H 0.97002 * 119.99750 * 179.97438 * 18 17 15 46 46 H 1.08993 * 109.59835 * 185.99932 * 23 14 13 47 47 H 1.09006 * 109.72732 * 65.60170 * 23 14 13 48 48 H 1.09001 * 109.47779 * 182.79613 * 24 10 9 49 49 H 1.08998 * 109.47925 * 302.82477 * 24 10 9 50 50 H 1.08007 * 126.12823 * 359.97438 * 26 25 2 51 51 H 1.07996 * 126.04307 * 180.15198 * 27 26 25 52 52 H 1.07998 * 125.89887 * 179.71748 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0108 1.0870 2.3634 7 7 1.9844 -0.3918 3.7003 8 6 2.7450 -1.6235 3.9821 9 6 2.3517 -2.0123 5.4303 10 6 2.2211 -0.6247 6.0978 11 6 1.6622 0.2657 4.9770 12 6 3.5884 -0.1278 6.5476 13 6 4.1530 -1.0799 7.6085 14 7 3.1605 -1.2318 8.6813 15 6 3.5015 -0.9883 9.9849 16 1 4.2896 -0.2865 10.2149 17 6 2.8345 -1.6436 11.0108 18 7 2.1332 -2.7273 10.7532 19 14 2.9322 -0.9876 12.7571 20 1 3.7767 0.2336 12.7806 21 1 1.5671 -0.6542 13.2377 22 1 3.5297 -2.0203 13.6412 23 6 1.7960 -1.6499 8.3316 24 6 1.2468 -0.6940 7.2661 25 7 2.0184 -0.6906 -1.1962 26 6 1.4433 -1.7592 -1.7863 27 6 2.1964 -2.0924 -2.8600 28 6 3.2739 -1.2028 -2.9227 29 7 3.1682 -0.3620 -1.9257 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.1263 -0.7993 1.2056 34 1 1.6054 -1.7198 1.2952 35 1 3.8160 -1.4306 3.9189 36 1 2.4595 -2.4129 3.2868 37 1 3.1370 -2.6014 5.9038 38 1 1.4011 -2.5453 5.4474 39 1 0.5815 0.3613 5.0829 40 1 2.1276 1.2506 5.0183 41 1 4.2631 -0.0959 5.6920 42 1 3.4908 0.8717 6.9712 43 1 5.0740 -0.6657 8.0186 44 1 4.3554 -2.0513 7.1574 45 1 1.6674 -3.1853 11.4702 46 1 1.1633 -1.6115 9.2182 47 1 1.8121 -2.6662 7.9376 48 1 1.1251 0.2997 7.6973 49 1 0.2819 -1.0581 6.9135 50 1 0.5419 -2.2577 -1.4614 51 1 2.0024 -2.9047 -3.5448 52 1 4.0579 -1.2090 -3.6654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040904249.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:42 Heat of formation + Delta-G solvation = 49.073425 kcal Electronic energy + Delta-G solvation = -30991.912682 eV Core-core repulsion = 26992.912547 eV Total energy + Delta-G solvation = -3999.000135 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.17649 -41.57906 -40.03440 -37.49090 -36.28801 -34.79002 -32.77872 -31.67750 -31.30846 -30.73572 -30.55138 -29.50066 -28.02624 -25.78932 -24.57709 -24.04451 -23.67426 -22.52251 -21.94743 -20.98403 -20.26438 -19.57475 -18.74657 -18.20847 -17.41047 -17.25686 -16.93090 -16.78659 -15.89412 -15.78449 -15.65616 -15.51339 -15.21406 -14.99179 -14.72025 -14.57561 -14.35035 -14.24046 -13.91737 -13.87585 -13.65280 -13.49013 -13.46343 -13.15325 -13.02979 -12.82511 -12.61105 -12.55196 -12.46952 -12.28059 -12.23554 -12.07879 -11.90535 -11.77042 -11.57326 -11.42111 -11.17079 -11.07971 -10.90641 -10.50019 -10.37860 -9.70262 -9.49974 -8.63396 -7.86380 -5.29702 1.00293 1.42365 1.44769 1.47975 1.51114 1.57191 2.00661 2.04687 2.51601 3.25656 3.35559 3.46042 3.60458 3.60614 3.73461 3.79749 3.82487 4.00579 4.08746 4.14946 4.24182 4.26143 4.40582 4.40944 4.45195 4.54190 4.62530 4.68073 4.71232 4.74178 4.77176 4.79068 4.84017 4.88439 4.93566 4.97673 5.00679 5.09341 5.16639 5.20191 5.22465 5.28132 5.31107 5.39032 5.44629 5.57051 5.67816 5.79746 5.82261 6.16691 6.41607 6.46767 6.82906 7.03443 7.17918 7.90443 8.40018 9.19325 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.030034 B = 0.001974 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.067362 B =14184.241801 C =14389.746714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.178 3.822 3 H 0.085 0.915 4 C -0.136 4.136 5 C 0.532 3.468 6 O -0.576 6.576 7 N -0.611 5.611 8 C 0.103 3.897 9 C -0.120 4.120 10 C -0.052 4.052 11 C 0.124 3.876 12 C -0.107 4.107 13 C 0.143 3.857 14 N -0.609 5.609 15 C -0.258 4.258 16 H 0.062 0.938 17 C -0.049 4.049 18 N -0.931 5.931 19 Si 0.960 3.040 20 H -0.270 1.270 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.182 3.818 24 C -0.114 4.114 25 N -0.375 5.375 26 C 0.055 3.945 27 C -0.284 4.284 28 C 0.037 3.963 29 N -0.345 5.345 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.048 0.952 44 H 0.028 0.972 45 H 0.249 0.751 46 H 0.048 0.952 47 H 0.008 0.992 48 H 0.045 0.955 49 H 0.067 0.933 50 H 0.201 0.799 51 H 0.168 0.832 52 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.986 -1.159 -25.802 25.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.076 3.924 3 H 0.103 0.897 4 C -0.176 4.176 5 C 0.322 3.678 6 O -0.456 6.456 7 N -0.344 5.344 8 C -0.019 4.019 9 C -0.157 4.157 10 C -0.052 4.052 11 C 0.001 3.999 12 C -0.146 4.146 13 C 0.018 3.982 14 N -0.333 5.333 15 C -0.389 4.389 16 H 0.080 0.920 17 C -0.245 4.245 18 N -0.577 5.577 19 Si 0.789 3.211 20 H -0.194 1.194 21 H -0.218 1.218 22 H -0.220 1.220 23 C 0.056 3.944 24 C -0.154 4.154 25 N -0.157 5.157 26 C -0.091 4.091 27 C -0.313 4.313 28 C -0.149 4.149 29 N -0.166 5.166 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.026 0.974 48 H 0.064 0.936 49 H 0.086 0.914 50 H 0.218 0.782 51 H 0.186 0.814 52 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.923 0.406 -25.123 25.200 hybrid contribution -0.295 -0.360 1.126 1.218 sum -2.217 0.046 -23.997 24.100 Atomic orbital electron populations 1.22234 0.91140 1.04261 1.04149 1.20821 0.95941 0.95821 0.79810 0.89662 1.21966 1.04276 1.01130 0.90245 1.20312 0.78660 0.85099 0.83742 1.90688 1.42202 1.26271 1.86455 1.48619 1.54895 1.25812 1.05065 1.22573 0.96480 0.85836 0.96998 1.22811 1.02928 0.96004 0.93996 1.20835 0.95687 0.95476 0.93243 1.21884 0.99936 0.95921 0.82137 1.21773 0.95483 0.98867 0.98455 1.21093 0.91723 0.96398 0.88978 1.44297 1.06715 1.79921 1.02350 1.19494 1.18472 1.17423 0.83509 0.92033 1.25694 1.01569 0.95936 1.01286 1.70164 1.37205 1.18097 1.32260 0.85319 0.77099 0.77886 0.80820 1.19424 1.21848 1.21955 1.20561 0.85599 0.93063 0.95179 1.21909 0.97516 1.00091 0.95850 1.48954 1.19512 1.24589 1.22664 1.23094 1.00575 0.90342 0.95069 1.21880 0.98954 1.06931 1.03541 1.24417 1.00063 0.93476 0.96908 1.77364 1.04322 1.25697 1.09250 0.89703 0.89749 0.91618 0.87780 0.85719 0.89975 0.87899 0.89775 0.90505 0.91939 0.92295 0.90443 0.93252 0.93384 0.95397 0.94184 0.93352 0.97353 0.93638 0.91450 0.78210 0.81407 0.78042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 8.58 71.98 0.62 -1.76 16 2 C 0.18 3.16 3.05 44.99 0.14 3.30 16 3 H 0.09 1.93 7.96 -2.39 -0.02 1.91 16 4 C -0.14 -2.12 4.51 29.85 0.13 -1.99 16 5 C 0.53 11.91 7.57 87.65 0.66 12.57 16 6 O -0.58 -16.81 14.29 -3.06 -0.04 -16.85 16 7 N -0.61 -13.47 3.33 -812.30 -2.71 -16.18 16 8 C 0.10 1.81 6.37 86.88 0.55 2.37 16 9 C -0.12 -2.84 4.92 31.81 0.16 -2.69 16 10 C -0.05 -1.46 0.55 -51.91 -0.03 -1.49 16 11 C 0.12 3.26 6.05 86.48 0.52 3.78 16 12 C -0.11 -3.25 4.74 30.46 0.14 -3.10 16 13 C 0.14 5.44 6.19 86.40 0.53 5.98 16 14 N -0.61 -29.05 2.98 -698.58 -2.08 -31.13 16 15 C -0.26 -13.91 9.57 84.03 0.80 -13.10 16 16 H 0.06 3.28 7.89 -2.91 -0.02 3.26 16 17 C -0.05 -2.71 4.90 84.86 0.42 -2.29 16 18 N -0.93 -53.70 11.20 21.65 0.24 -53.45 16 19 Si 0.96 44.48 29.59 68.60 2.03 46.51 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 C 0.18 8.19 5.03 86.40 0.43 8.63 16 24 C -0.11 -3.98 4.72 30.46 0.14 -3.83 16 25 N -0.37 -6.77 3.52 -327.48 -1.15 -7.93 16 26 C 0.05 0.72 10.59 83.54 0.88 1.61 16 27 C -0.28 -3.74 10.80 21.99 0.24 -3.50 16 28 C 0.04 0.60 12.03 85.24 1.03 1.63 16 29 N -0.35 -7.62 12.58 -57.02 -0.72 -8.34 16 30 H 0.08 0.82 7.16 -2.38 -0.02 0.81 16 31 H 0.08 1.63 5.95 -2.39 -0.01 1.62 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.12 1.33 7.85 -2.39 -0.02 1.31 16 35 H 0.08 1.33 7.74 -2.38 -0.02 1.31 16 36 H 0.10 1.25 7.48 -2.39 -0.02 1.23 16 37 H 0.08 2.21 6.08 -2.39 -0.01 2.20 16 38 H 0.08 1.82 8.01 -2.39 -0.02 1.80 16 39 H 0.06 1.72 7.78 -2.38 -0.02 1.70 16 40 H 0.06 1.65 7.83 -2.38 -0.02 1.63 16 41 H 0.08 1.96 7.47 -2.38 -0.02 1.95 16 42 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 44 H 0.03 1.03 6.47 -2.39 -0.02 1.01 16 45 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 46 H 0.05 2.56 6.02 -2.39 -0.01 2.54 16 47 H 0.01 0.39 7.56 -2.38 -0.02 0.37 16 48 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.07 2.11 8.11 -2.39 -0.02 2.09 16 50 H 0.20 1.21 7.27 -2.91 -0.02 1.19 16 51 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 52 H 0.20 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -69.97 398.53 3.85 -66.12 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.90 Total: 15.16 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 7.38 Total: 6.09 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -6.42 Total: -117.03 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.04 Total: -16.85 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -69.97 3.85 -66.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040904249.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.197 kcal (2) G-P(sol) polarization free energy of solvation -69.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds