Wall clock time and date at job start Wed Apr 1 2020 04:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47199 * 2 1 4 4 C 1.52999 * 109.47069 * 239.99565 * 2 1 3 5 5 C 1.50706 * 109.46573 * 65.00394 * 4 2 1 6 6 O 1.21274 * 120.00042 * 359.72068 * 5 4 2 7 7 N 1.34777 * 119.99766 * 179.97438 * 5 4 2 8 8 C 1.47578 * 125.67676 * 359.69727 * 7 5 4 9 9 C 1.55439 * 104.91501 * 156.08838 * 8 7 5 10 10 C 1.53498 * 101.29620 * 35.63045 * 9 8 7 11 11 C 1.53463 * 111.82011 * 204.13006 * 10 9 8 12 12 C 1.54629 * 102.74779 * 272.84492 * 11 10 9 13 13 N 1.47154 * 107.33836 * 339.33531 * 12 11 10 14 14 C 1.36939 * 125.59759 * 179.06292 * 13 12 11 15 15 H 1.08003 * 119.99789 * 179.97438 * 14 13 12 16 16 C 1.38812 * 119.99952 * 359.97438 * 14 13 12 17 17 N 1.31625 * 120.00047 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99984 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47163 * 89.99507 * 18 16 14 20 20 H 1.48498 * 109.47023 * 209.99318 * 18 16 14 21 21 H 1.48500 * 109.46978 * 329.99528 * 18 16 14 22 22 C 1.47748 * 108.80352 * 359.08926 * 13 12 11 23 23 C 1.47441 * 125.67971 * 179.97438 * 7 5 4 24 24 C 1.50707 * 109.46958 * 119.99836 * 2 1 3 25 25 C 1.39877 * 126.03598 * 59.69336 * 24 2 1 26 26 N 1.30841 * 108.19553 * 179.81631 * 25 24 2 27 27 N 1.40082 * 108.20743 * 0.43565 * 26 25 24 28 28 C 1.46498 * 126.03523 * 179.69369 * 27 26 25 29 29 C 1.34945 * 107.92467 * 359.72146 * 27 26 25 30 30 H 1.09001 * 109.46743 * 300.00156 * 1 2 3 31 31 H 1.09000 * 109.47048 * 59.99887 * 1 2 3 32 32 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47486 * 305.00460 * 4 2 1 34 34 H 1.09001 * 109.47362 * 184.99737 * 4 2 1 35 35 H 1.09004 * 110.33021 * 275.07362 * 8 7 5 36 36 H 1.09003 * 110.33240 * 37.29465 * 8 7 5 37 37 H 1.09007 * 111.24108 * 277.56788 * 9 8 7 38 38 H 1.09001 * 110.96665 * 153.57829 * 9 8 7 39 39 H 1.09004 * 110.75317 * 31.15826 * 11 10 9 40 40 H 1.09001 * 110.75870 * 154.34431 * 11 10 9 41 41 H 1.08998 * 109.87053 * 98.77828 * 12 11 10 42 42 H 1.09002 * 109.87138 * 219.90151 * 12 11 10 43 43 H 0.96994 * 119.99446 * 180.02562 * 17 16 14 44 44 H 1.09003 * 110.39980 * 263.54232 * 22 13 12 45 45 H 1.09002 * 110.39914 * 141.13989 * 22 13 12 46 46 H 1.09000 * 109.99803 * 301.54560 * 23 7 5 47 47 H 1.09005 * 109.99086 * 62.83354 * 23 7 5 48 48 H 1.07997 * 125.90122 * 359.97438 * 25 24 2 49 49 H 1.08995 * 109.47577 * 270.02616 * 28 27 26 50 50 H 1.09001 * 109.46839 * 30.03231 * 28 27 26 51 51 H 1.09000 * 109.46870 * 150.02475 * 28 27 26 52 52 H 1.08001 * 126.12251 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 8 1.0070 1.0845 -2.3635 7 7 1.9853 -0.3914 -3.7001 8 6 2.7532 -1.6197 -3.9821 9 6 2.3612 -2.0121 -5.4341 10 6 2.2062 -0.6316 -6.0872 11 6 1.2776 -0.6792 -7.3081 12 6 2.2435 -1.0506 -8.4571 13 7 3.6039 -0.7044 -8.0155 14 6 4.7500 -0.8955 -8.7402 15 1 5.7049 -0.6064 -8.3266 16 6 4.6844 -1.4606 -10.0064 17 7 3.5207 -1.8133 -10.5102 18 14 6.2479 -1.7219 -10.9947 19 1 6.8043 -3.0657 -10.6950 20 1 5.9391 -1.6260 -12.4441 21 1 7.2432 -0.6816 -10.6308 22 6 3.5303 -0.1175 -6.6616 23 6 1.6620 0.2665 -4.9794 24 6 2.0323 -0.7104 1.2305 25 6 1.7685 -2.0391 1.5790 26 7 2.3775 -2.2940 2.7086 27 7 3.0409 -1.1309 3.1203 28 6 3.8399 -0.9800 4.3389 29 6 2.8135 -0.1740 2.1964 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6053 -1.7199 -1.2951 34 1 3.1263 -0.7995 -1.2056 35 1 3.8230 -1.4210 -3.9166 36 1 2.4710 -2.4107 -3.2872 37 1 1.4204 -2.5624 -5.4542 38 1 3.1567 -2.5840 -5.9119 39 1 0.5136 -1.4464 -7.1826 40 1 0.8201 0.2944 -7.4837 41 1 2.1813 -2.1192 -8.6626 42 1 1.9893 -0.4836 -9.3527 43 1 3.4750 -2.2085 -11.3948 44 1 3.5222 0.9709 -6.7193 45 1 4.3670 -0.4603 -6.0529 46 1 0.5820 0.3721 -5.0817 47 1 2.1381 1.2460 -5.0254 48 1 1.1680 -2.7352 1.0121 49 1 3.1988 -0.6461 5.1547 50 1 4.2900 -1.9380 4.5991 51 1 4.6255 -0.2436 4.1694 52 1 3.1876 0.8388 2.2234 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041508594.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:29 Heat of formation + Delta-G solvation = 68.800657 kcal Electronic energy + Delta-G solvation = -30508.239964 eV Core-core repulsion = 26510.095267 eV Total energy + Delta-G solvation = -3998.144698 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.53667 -40.26665 -38.61693 -35.81365 -35.26245 -33.04239 -32.70255 -30.51276 -29.92440 -29.39793 -28.69527 -27.56675 -26.81257 -25.46217 -23.79084 -22.73180 -22.56034 -21.36834 -20.24306 -19.99162 -19.05786 -18.58967 -17.31124 -16.86041 -16.43452 -15.95838 -15.75807 -15.57314 -14.75222 -14.70869 -14.46069 -14.23734 -14.14070 -13.78358 -13.60857 -13.29791 -13.16845 -13.03724 -12.83542 -12.60943 -12.53018 -12.37736 -12.18688 -11.97143 -11.65202 -11.49167 -11.29149 -11.25406 -11.17146 -11.11413 -10.86798 -10.77211 -10.60740 -10.18521 -9.99865 -9.93778 -9.77740 -9.70264 -9.67568 -9.56317 -8.62686 -8.59902 -8.49284 -6.83082 -5.71412 -3.04701 1.60557 2.22567 2.52255 2.73577 3.11173 3.39321 3.44731 3.46562 4.16494 4.47157 4.51872 4.53517 4.71613 4.73867 4.79542 4.84597 4.95858 4.98379 5.02164 5.05898 5.20471 5.36466 5.40677 5.43600 5.47185 5.51698 5.52059 5.56720 5.62449 5.79075 5.80981 5.86232 5.97649 6.00741 6.06351 6.20183 6.22506 6.27990 6.28769 6.34916 6.39569 6.44389 6.52412 6.64308 6.70115 6.73258 6.83697 7.41662 7.55960 7.63229 7.65585 7.82880 8.25346 8.27219 9.21970 9.81992 10.48248 11.40111 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.001992 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.194720 B =14054.255804 C =14861.804133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.006 3.994 3 H 0.081 0.919 4 C -0.127 4.127 5 C 0.526 3.474 6 O -0.545 6.545 7 N -0.617 5.617 8 C 0.099 3.901 9 C -0.110 4.110 10 C -0.084 4.084 11 C -0.131 4.131 12 C 0.180 3.820 13 N -0.604 5.604 14 C -0.227 4.227 15 H 0.077 0.923 16 C -0.009 4.009 17 N -0.922 5.922 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.151 3.849 23 C 0.125 3.875 24 C -0.227 4.227 25 C 0.055 3.945 26 N -0.300 5.300 27 N -0.380 5.380 28 C 0.102 3.898 29 C 0.056 3.944 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.252 0.748 44 H 0.020 0.980 45 H 0.039 0.961 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.181 0.819 49 H 0.073 0.927 50 H 0.088 0.912 51 H 0.086 0.914 52 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 0.920 26.140 26.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.014 4.014 3 H 0.100 0.900 4 C -0.167 4.167 5 C 0.315 3.685 6 O -0.423 6.423 7 N -0.351 5.351 8 C -0.024 4.024 9 C -0.148 4.148 10 C -0.085 4.085 11 C -0.169 4.169 12 C 0.055 3.945 13 N -0.331 5.331 14 C -0.355 4.355 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.569 5.569 18 Si 0.741 3.259 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.025 3.975 23 C 0.002 3.998 24 C -0.238 4.238 25 C -0.131 4.131 26 N -0.121 5.121 27 N -0.162 5.162 28 C -0.039 4.039 29 C -0.090 4.090 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.037 0.963 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.198 0.802 49 H 0.091 0.909 50 H 0.107 0.893 51 H 0.105 0.895 52 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.277 0.552 27.107 27.310 hybrid contribution 0.790 0.394 -1.220 1.506 sum -2.487 0.946 25.887 26.023 Atomic orbital electron populations 1.21927 0.94153 1.01480 1.02845 1.19125 0.96007 0.98129 0.88147 0.90038 1.21711 1.02861 1.00083 0.92041 1.20336 0.79226 0.85507 0.83383 1.90653 1.40496 1.25086 1.86053 1.48765 1.54940 1.25641 1.05721 1.22535 0.95992 0.86115 0.97742 1.22569 1.02731 0.96712 0.92815 1.21571 0.98284 0.94682 0.94013 1.22705 0.97732 1.00767 0.95733 1.21198 0.81826 0.99449 0.91977 1.44569 1.03333 1.72137 1.13051 1.19039 0.85211 1.34536 0.96710 0.90536 1.24794 0.96956 1.01282 0.97461 1.69964 1.22028 1.47554 1.17382 0.86135 0.82308 0.77909 0.79501 1.21651 1.21722 1.20756 1.21318 0.93167 0.95451 0.87580 1.21771 1.00228 0.96273 0.81480 1.20096 1.07810 0.95377 1.00516 1.23749 0.99121 0.96172 0.94031 1.77356 1.13394 1.05994 1.15329 1.48439 1.40393 1.08319 1.19063 1.21836 0.94383 1.04075 0.83613 1.22358 1.00305 0.95658 0.90678 0.93118 0.90413 0.93344 0.89036 0.89104 0.91167 0.90916 0.90932 0.88839 0.91901 0.92212 0.93509 0.94004 0.93788 0.96265 0.94311 0.91422 0.91405 0.80229 0.90864 0.89347 0.89501 0.81013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.82 37.16 0.33 -1.14 16 2 C 0.01 0.06 2.40 -91.77 -0.22 -0.16 16 3 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 4 C -0.13 -1.23 4.04 -27.88 -0.11 -1.34 16 5 C 0.53 6.94 7.57 -10.98 -0.08 6.85 16 6 O -0.54 -8.80 14.29 5.56 0.08 -8.72 16 7 N -0.62 -8.25 3.34 -170.74 -0.57 -8.82 16 8 C 0.10 1.17 6.63 -2.16 -0.01 1.15 16 9 C -0.11 -1.57 5.99 -25.18 -0.15 -1.72 16 10 C -0.08 -1.37 0.61 -154.08 -0.09 -1.46 16 11 C -0.13 -2.33 5.85 -25.63 -0.15 -2.48 16 12 C 0.18 4.21 5.35 -2.83 -0.02 4.20 16 13 N -0.60 -14.85 3.41 -170.56 -0.58 -15.44 16 14 C -0.23 -6.16 10.28 -15.06 -0.15 -6.32 16 15 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 16 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 17 N -0.92 -26.62 10.30 55.49 0.57 -26.05 16 18 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.15 2.99 6.10 -3.25 -0.02 2.97 16 23 C 0.12 1.87 6.14 -3.71 -0.02 1.85 16 24 C -0.23 -2.06 4.80 -105.05 -0.50 -2.56 16 25 C 0.06 0.53 11.54 -17.36 -0.20 0.33 16 26 N -0.30 -3.24 12.58 30.63 0.39 -2.86 16 27 N -0.38 -3.26 4.01 -68.17 -0.27 -3.53 16 28 C 0.10 0.45 11.47 59.85 0.69 1.14 16 29 C 0.06 0.45 11.38 -17.23 -0.20 0.25 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.95 5.94 -51.93 -0.31 0.64 16 32 H 0.05 0.43 8.02 -51.93 -0.42 0.02 16 33 H 0.09 0.76 7.86 -51.93 -0.41 0.35 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.68 7.49 -51.93 -0.39 0.29 16 37 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 38 H 0.09 1.51 8.00 -51.93 -0.42 1.10 16 39 H 0.06 1.01 7.80 -51.93 -0.40 0.61 16 40 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 41 H 0.05 1.21 7.38 -51.93 -0.38 0.82 16 42 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.02 0.40 7.79 -51.93 -0.40 -0.01 16 45 H 0.04 0.75 7.96 -51.93 -0.41 0.33 16 46 H 0.07 1.02 7.89 -51.93 -0.41 0.61 16 47 H 0.07 1.07 7.62 -51.93 -0.40 0.67 16 48 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 49 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 50 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 51 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 52 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 409.44 15.07 6.17 6.17 Total: -1.00 -33.55 409.44 -9.17 -42.72 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.90 Total: -1.50 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.02 Total: 1.22 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.47 Total: -56.69 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.08 Total: -8.72 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.55 -9.17 -42.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041508594.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.517 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds