Wall clock time and date at job start Wed Apr 1 2020 04:59:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08994 * 109.47199 * 2 1
4 4 C 1.52999 * 109.47069 * 239.99565 * 2 1 3
5 5 C 1.50706 * 109.46573 * 65.00394 * 4 2 1
6 6 O 1.21274 * 120.00042 * 359.72068 * 5 4 2
7 7 N 1.34777 * 119.99766 * 179.97438 * 5 4 2
8 8 C 1.47578 * 125.67676 * 359.69727 * 7 5 4
9 9 C 1.55439 * 104.91501 * 156.08838 * 8 7 5
10 10 C 1.53498 * 101.29620 * 35.63045 * 9 8 7
11 11 C 1.53463 * 111.82011 * 204.13006 * 10 9 8
12 12 C 1.54629 * 102.74779 * 272.84492 * 11 10 9
13 13 N 1.47154 * 107.33836 * 339.33531 * 12 11 10
14 14 C 1.36939 * 125.59759 * 179.06292 * 13 12 11
15 15 H 1.08003 * 119.99789 * 179.97438 * 14 13 12
16 16 C 1.38812 * 119.99952 * 359.97438 * 14 13 12
17 17 N 1.31625 * 120.00047 * 359.97438 * 16 14 13
18 18 Si 1.86804 * 119.99984 * 180.02562 * 16 14 13
19 19 H 1.48500 * 109.47163 * 89.99507 * 18 16 14
20 20 H 1.48498 * 109.47023 * 209.99318 * 18 16 14
21 21 H 1.48500 * 109.46978 * 329.99528 * 18 16 14
22 22 C 1.47748 * 108.80352 * 359.08926 * 13 12 11
23 23 C 1.47441 * 125.67971 * 179.97438 * 7 5 4
24 24 C 1.50707 * 109.46958 * 119.99836 * 2 1 3
25 25 C 1.39877 * 126.03598 * 59.69336 * 24 2 1
26 26 N 1.30841 * 108.19553 * 179.81631 * 25 24 2
27 27 N 1.40082 * 108.20743 * 0.43565 * 26 25 24
28 28 C 1.46498 * 126.03523 * 179.69369 * 27 26 25
29 29 C 1.34945 * 107.92467 * 359.72146 * 27 26 25
30 30 H 1.09001 * 109.46743 * 300.00156 * 1 2 3
31 31 H 1.09000 * 109.47048 * 59.99887 * 1 2 3
32 32 H 1.08994 * 109.47199 * 179.97438 * 1 2 3
33 33 H 1.09000 * 109.47486 * 305.00460 * 4 2 1
34 34 H 1.09001 * 109.47362 * 184.99737 * 4 2 1
35 35 H 1.09004 * 110.33021 * 275.07362 * 8 7 5
36 36 H 1.09003 * 110.33240 * 37.29465 * 8 7 5
37 37 H 1.09007 * 111.24108 * 277.56788 * 9 8 7
38 38 H 1.09001 * 110.96665 * 153.57829 * 9 8 7
39 39 H 1.09004 * 110.75317 * 31.15826 * 11 10 9
40 40 H 1.09001 * 110.75870 * 154.34431 * 11 10 9
41 41 H 1.08998 * 109.87053 * 98.77828 * 12 11 10
42 42 H 1.09002 * 109.87138 * 219.90151 * 12 11 10
43 43 H 0.96994 * 119.99446 * 180.02562 * 17 16 14
44 44 H 1.09003 * 110.39980 * 263.54232 * 22 13 12
45 45 H 1.09002 * 110.39914 * 141.13989 * 22 13 12
46 46 H 1.09000 * 109.99803 * 301.54560 * 23 7 5
47 47 H 1.09005 * 109.99086 * 62.83354 * 23 7 5
48 48 H 1.07997 * 125.90122 * 359.97438 * 25 24 2
49 49 H 1.08995 * 109.47577 * 270.02616 * 28 27 26
50 50 H 1.09001 * 109.46839 * 30.03231 * 28 27 26
51 51 H 1.09000 * 109.46870 * 150.02475 * 28 27 26
52 52 H 1.08001 * 126.12251 * 179.97438 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 -1.2492
5 6 1.6413 0.0570 -2.4765
6 8 1.0070 1.0845 -2.3635
7 7 1.9853 -0.3914 -3.7001
8 6 2.7532 -1.6197 -3.9821
9 6 2.3612 -2.0121 -5.4341
10 6 2.2062 -0.6316 -6.0872
11 6 1.2776 -0.6792 -7.3081
12 6 2.2435 -1.0506 -8.4571
13 7 3.6039 -0.7044 -8.0155
14 6 4.7500 -0.8955 -8.7402
15 1 5.7049 -0.6064 -8.3266
16 6 4.6844 -1.4606 -10.0064
17 7 3.5207 -1.8133 -10.5102
18 14 6.2479 -1.7219 -10.9947
19 1 6.8043 -3.0657 -10.6950
20 1 5.9391 -1.6260 -12.4441
21 1 7.2432 -0.6816 -10.6308
22 6 3.5303 -0.1175 -6.6616
23 6 1.6620 0.2665 -4.9794
24 6 2.0323 -0.7104 1.2305
25 6 1.7685 -2.0391 1.5790
26 7 2.3775 -2.2940 2.7086
27 7 3.0409 -1.1309 3.1203
28 6 3.8399 -0.9800 4.3389
29 6 2.8135 -0.1740 2.1964
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3633 -1.0276 -0.0005
33 1 1.6053 -1.7199 -1.2951
34 1 3.1263 -0.7995 -1.2056
35 1 3.8230 -1.4210 -3.9166
36 1 2.4710 -2.4107 -3.2872
37 1 1.4204 -2.5624 -5.4542
38 1 3.1567 -2.5840 -5.9119
39 1 0.5136 -1.4464 -7.1826
40 1 0.8201 0.2944 -7.4837
41 1 2.1813 -2.1192 -8.6626
42 1 1.9893 -0.4836 -9.3527
43 1 3.4750 -2.2085 -11.3948
44 1 3.5222 0.9709 -6.7193
45 1 4.3670 -0.4603 -6.0529
46 1 0.5820 0.3721 -5.0817
47 1 2.1381 1.2460 -5.0254
48 1 1.1680 -2.7352 1.0121
49 1 3.1988 -0.6461 5.1547
50 1 4.2900 -1.9380 4.5991
51 1 4.6255 -0.2436 4.1694
52 1 3.1876 0.8388 2.2234
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001041508594.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:59:27
Heat of formation + Delta-G solvation = 49.111145 kcal
Electronic energy + Delta-G solvation = -30509.093766 eV
Core-core repulsion = 26510.095267 eV
Total energy + Delta-G solvation = -3998.998499 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-42.16204 -41.42924 -39.86568 -37.20466 -36.10984 -34.47900 -33.59416 -32.07959
-30.80123 -30.65400 -29.94138 -28.67922 -27.33100 -27.16808 -25.18062 -23.98584
-23.34971 -22.08119 -21.96188 -20.72399 -20.24678 -19.71830 -18.79949 -18.05317
-17.28063 -17.02358 -16.74614 -16.55136 -16.25279 -15.88764 -15.67471 -15.41217
-15.19285 -14.96771 -14.60933 -14.22708 -13.96391 -13.86336 -13.81858 -13.75760
-13.64462 -13.45000 -13.29845 -13.14794 -12.97037 -12.90794 -12.76215 -12.55681
-12.39431 -12.32473 -12.03900 -12.01381 -11.88597 -11.76394 -11.48728 -11.39461
-11.30723 -11.22890 -10.66908 -10.65763 -10.31629 -9.57716 -9.24890 -8.86125
-7.82001 -5.16844 1.01046 1.47492 1.48890 1.57428 1.73111 1.74835
1.85981 2.11516 2.51332 3.34186 3.43654 3.60910 3.64852 3.70093
3.81430 3.94474 4.03635 4.15413 4.24774 4.26915 4.33752 4.38402
4.40983 4.46877 4.49991 4.64438 4.67254 4.72156 4.73964 4.77033
4.79745 4.82646 4.84129 4.90102 4.92595 5.03538 5.06945 5.09649
5.11241 5.24816 5.28194 5.39409 5.41063 5.47934 5.48582 5.55169
5.71186 5.78516 5.81855 6.19009 6.22487 6.63925 6.79935 7.13554
7.25845 7.80515 8.45320 9.28139
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.019491 B = 0.001992 C = 0.001884
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1436.194720 B =14054.255804 C =14861.804133
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.015 3.985
3 H 0.071 0.929
4 C -0.118 4.118
5 C 0.525 3.475
6 O -0.578 6.578
7 N -0.618 5.618
8 C 0.106 3.894
9 C -0.108 4.108
10 C -0.072 4.072
11 C -0.118 4.118
12 C 0.189 3.811
13 N -0.623 5.623
14 C -0.237 4.237
15 H 0.081 0.919
16 C -0.067 4.067
17 N -0.951 5.951
18 Si 0.976 3.024
19 H -0.284 1.284
20 H -0.297 1.297
21 H -0.271 1.271
22 C 0.149 3.851
23 C 0.132 3.868
24 C -0.239 4.239
25 C 0.050 3.950
26 N -0.337 5.337
27 N -0.383 5.383
28 C 0.093 3.907
29 C 0.058 3.942
30 H 0.049 0.951
31 H 0.053 0.947
32 H 0.058 0.942
33 H 0.112 0.888
34 H 0.104 0.896
35 H 0.074 0.926
36 H 0.107 0.893
37 H 0.087 0.913
38 H 0.073 0.927
39 H 0.085 0.915
40 H 0.067 0.933
41 H 0.016 0.984
42 H 0.001 0.999
43 H 0.246 0.754
44 H 0.015 0.985
45 H 0.046 0.954
46 H 0.070 0.930
47 H 0.058 0.942
48 H 0.195 0.805
49 H 0.083 0.917
50 H 0.088 0.912
51 H 0.112 0.888
52 H 0.199 0.801
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.606 0.609 28.659 28.784
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.005 4.005
3 H 0.090 0.910
4 C -0.158 4.158
5 C 0.316 3.684
6 O -0.458 6.458
7 N -0.351 5.351
8 C -0.016 4.016
9 C -0.146 4.146
10 C -0.074 4.074
11 C -0.156 4.156
12 C 0.064 3.936
13 N -0.350 5.350
14 C -0.366 4.366
15 H 0.099 0.901
16 C -0.260 4.260
17 N -0.600 5.600
18 Si 0.805 3.195
19 H -0.211 1.211
20 H -0.224 1.224
21 H -0.196 1.196
22 C 0.024 3.976
23 C 0.009 3.991
24 C -0.250 4.250
25 C -0.135 4.135
26 N -0.160 5.160
27 N -0.166 5.166
28 C -0.047 4.047
29 C -0.089 4.089
30 H 0.069 0.931
31 H 0.072 0.928
32 H 0.077 0.923
33 H 0.130 0.870
34 H 0.122 0.878
35 H 0.093 0.907
36 H 0.126 0.874
37 H 0.105 0.895
38 H 0.091 0.909
39 H 0.103 0.897
40 H 0.086 0.914
41 H 0.034 0.966
42 H 0.019 0.981
43 H 0.055 0.945
44 H 0.033 0.967
45 H 0.064 0.936
46 H 0.089 0.911
47 H 0.076 0.924
48 H 0.212 0.788
49 H 0.102 0.898
50 H 0.106 0.894
51 H 0.130 0.870
52 H 0.216 0.784
Dipole moment (debyes) X Y Z Total
from point charges -2.535 0.238 29.678 29.787
hybrid contribution 0.581 0.564 -1.955 2.116
sum -1.954 0.802 27.723 27.803
Atomic orbital electron populations
1.21858 0.94720 1.01771 1.01598 1.18980 0.95430 0.97666 0.88467
0.91039 1.21731 1.03717 1.00330 0.89982 1.20970 0.78324 0.85223
0.83923 1.90650 1.41968 1.26723 1.86476 1.48818 1.55111 1.25968
1.05250 1.22580 0.96051 0.86297 0.96665 1.22528 1.02858 0.95101
0.94108 1.21397 0.95653 0.96475 0.93851 1.22571 0.97146 1.01825
0.94069 1.20927 0.82944 0.96853 0.92833 1.44844 1.03105 1.72210
1.14806 1.19422 0.86385 1.33698 0.97138 0.90101 1.25614 0.99872
1.01798 0.98694 1.70186 1.23911 1.48605 1.17278 0.85112 0.79018
0.78030 0.77377 1.21129 1.22390 1.19587 1.21456 0.95529 0.94930
0.85680 1.21528 1.00117 0.95490 0.81956 1.20047 1.08833 0.95373
1.00764 1.24038 0.98958 0.96658 0.93864 1.77301 1.14750 1.07634
1.16266 1.48765 1.40121 1.07775 1.19897 1.22145 0.94890 1.04958
0.82667 1.22826 0.99422 0.96556 0.90059 0.93137 0.92779 0.92274
0.86960 0.87778 0.90743 0.87443 0.89481 0.90881 0.89651 0.91423
0.96585 0.98083 0.94514 0.96717 0.93589 0.91146 0.92396 0.78843
0.89819 0.89360 0.86970 0.78440
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.62 8.82 71.98 0.63 -1.99 16
2 C 0.01 0.25 2.40 -11.54 -0.03 0.22 16
3 H 0.07 1.35 7.92 -2.39 -0.02 1.33 16
4 C -0.12 -1.91 4.04 29.85 0.12 -1.79 16
5 C 0.52 12.63 7.57 87.66 0.66 13.29 16
6 O -0.58 -17.99 14.29 -3.01 -0.04 -18.03 16
7 N -0.62 -14.93 3.34 -812.51 -2.72 -17.65 16
8 C 0.11 2.15 6.63 87.01 0.58 2.73 16
9 C -0.11 -2.86 5.99 31.60 0.19 -2.67 16
10 C -0.07 -2.27 0.61 -51.90 -0.03 -2.30 16
11 C -0.12 -4.13 5.85 31.30 0.18 -3.95 16
12 C 0.19 9.15 5.35 86.81 0.46 9.62 16
13 N -0.62 -31.21 3.41 -693.53 -2.36 -33.58 16
14 C -0.24 -13.10 10.28 84.03 0.86 -12.23 16
15 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16
16 C -0.07 -3.78 5.49 84.86 0.47 -3.31 16
17 N -0.95 -56.81 10.30 21.65 0.22 -56.59 16
18 Si 0.98 45.48 29.55 68.60 2.03 47.51 16
19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16
20 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16
21 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16
22 C 0.15 5.86 6.10 86.21 0.53 6.38 16
23 C 0.13 3.74 6.14 86.08 0.53 4.27 16
24 C -0.24 -3.78 4.80 -20.14 -0.10 -3.87 16
25 C 0.05 0.85 11.54 85.24 0.98 1.84 16
26 N -0.34 -6.76 12.58 -57.02 -0.72 -7.48 16
27 N -0.38 -5.75 4.01 -369.58 -1.48 -7.24 16
28 C 0.09 0.62 11.47 127.77 1.47 2.08 16
29 C 0.06 0.79 11.38 83.54 0.95 1.74 16
30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16
31 H 0.05 1.27 5.94 -2.39 -0.01 1.26 16
32 H 0.06 0.94 8.02 -2.39 -0.02 0.92 16
33 H 0.11 1.40 7.86 -2.39 -0.02 1.38 16
34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16
35 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16
36 H 0.11 1.50 7.49 -2.39 -0.02 1.49 16
37 H 0.09 2.08 7.85 -2.38 -0.02 2.06 16
38 H 0.07 2.28 8.00 -2.39 -0.02 2.26 16
39 H 0.08 2.63 7.80 -2.38 -0.02 2.61 16
40 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16
41 H 0.02 0.86 7.38 -2.39 -0.02 0.84 16
42 H 0.00 0.05 7.50 -2.39 -0.02 0.03 16
43 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16
44 H 0.02 0.61 7.79 -2.39 -0.02 0.59 16
45 H 0.05 1.73 7.96 -2.39 -0.02 1.72 16
46 H 0.07 1.98 7.89 -2.39 -0.02 1.96 16
47 H 0.06 1.76 7.62 -2.38 -0.02 1.74 16
48 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16
49 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16
50 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16
51 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16
52 H 0.20 1.46 8.06 -2.91 -0.02 1.43 16
Total: -1.00 -75.21 409.44 4.28 -70.93
By element:
Atomic # 1 Polarization: 11.18 SS G_CDS: 0.89 Total: 12.07 kcal
Atomic # 6 Polarization: 1.59 SS G_CDS: 8.46 Total: 10.05 kcal
Atomic # 7 Polarization: -115.47 SS G_CDS: -7.06 Total: -122.53 kcal
Atomic # 8 Polarization: -17.99 SS G_CDS: -0.04 Total: -18.03 kcal
Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal
Total: -75.21 4.28 -70.93 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001041508594.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.040 kcal
(2) G-P(sol) polarization free energy of solvation -75.205 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.835 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.929 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.111 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.24 seconds