Wall clock time and date at job start Wed Apr 1 2020 04:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47190 * 2 1 4 4 C 1.53002 * 109.47009 * 119.99742 * 2 1 3 5 5 C 1.50704 * 109.47193 * 295.00259 * 4 2 1 6 6 C 1.39872 * 126.03833 * 269.69401 * 5 4 2 7 7 N 1.30840 * 108.19930 * 179.81680 * 6 5 4 8 8 N 1.40080 * 108.20690 * 0.43855 * 7 6 5 9 9 C 1.46502 * 126.03953 * 179.70005 * 8 7 6 10 10 C 1.34953 * 107.92663 * 359.71706 * 8 7 6 11 11 C 1.50697 * 109.47286 * 239.99618 * 2 1 3 12 12 O 1.21276 * 119.99973 * 239.99616 * 11 2 1 13 13 N 1.34774 * 119.99882 * 60.00668 * 11 2 1 14 14 C 1.47618 * 126.91887 * 0.02562 * 13 11 2 15 15 C 1.54349 * 107.21719 * 155.07074 * 14 13 11 16 16 C 1.53084 * 104.62945 * 2.12243 * 15 14 13 17 17 C 1.53640 * 111.78036 * 259.50119 * 16 15 14 18 18 C 1.55180 * 101.41574 * 272.05824 * 17 16 15 19 19 N 1.47571 * 105.00695 * 324.51813 * 18 17 16 20 20 C 1.36940 * 125.67347 * 203.86352 * 19 18 17 21 21 H 1.07995 * 120.00023 * 180.02562 * 20 19 18 22 22 C 1.38808 * 120.00131 * 359.97438 * 20 19 18 23 23 N 1.31620 * 119.99982 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99890 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47060 * 90.00057 * 24 22 20 26 26 H 1.48508 * 109.46867 * 209.99908 * 24 22 20 27 27 H 1.48498 * 109.47041 * 329.99542 * 24 22 20 28 28 C 1.47402 * 108.65067 * 23.86178 * 19 18 17 29 29 C 1.48683 * 127.06318 * 179.81822 * 13 11 2 30 30 H 1.09002 * 109.46833 * 60.00140 * 1 2 3 31 31 H 1.08999 * 109.46713 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47422 * 300.00090 * 1 2 3 33 33 H 1.08993 * 109.47217 * 55.00064 * 4 2 1 34 34 H 1.08993 * 109.47058 * 175.00333 * 4 2 1 35 35 H 1.08001 * 125.90023 * 359.97438 * 6 5 4 36 36 H 1.08993 * 109.47101 * 270.02032 * 9 8 7 37 37 H 1.08999 * 109.46925 * 30.02031 * 9 8 7 38 38 H 1.09000 * 109.47252 * 150.01882 * 9 8 7 39 39 H 1.07996 * 126.12952 * 179.97438 * 10 8 7 40 40 H 1.09002 * 109.91864 * 35.61906 * 14 13 11 41 41 H 1.09002 * 109.92021 * 274.51788 * 14 13 11 42 42 H 1.08995 * 110.40470 * 120.91435 * 15 14 13 43 43 H 1.09002 * 110.40328 * 243.22189 * 15 14 13 44 44 H 1.09002 * 111.03233 * 30.09039 * 17 16 15 45 45 H 1.09001 * 111.04165 * 154.02150 * 17 16 15 46 46 H 1.09002 * 110.33622 * 205.63762 * 18 17 16 47 47 H 1.08998 * 110.42700 * 83.44545 * 18 17 16 48 48 H 0.96999 * 120.00025 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.98548 * 238.52953 * 28 19 18 50 50 H 1.08995 * 109.98864 * 117.21727 * 28 19 18 51 51 H 1.09003 * 110.54006 * 99.10899 * 29 13 11 52 52 H 1.08996 * 110.86340 * 336.08111 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 6 2.3927 1.0628 3.0934 7 7 1.7179 1.5030 4.1244 8 7 0.5186 0.7833 4.2022 9 6 -0.5260 0.9560 5.2147 10 6 0.4957 -0.0975 3.1800 11 6 2.0324 -0.7105 -1.2304 12 8 2.7297 -1.6964 -1.1190 13 7 1.7069 -0.2500 -2.4545 14 6 0.8744 0.9285 -2.7661 15 6 1.2870 1.4212 -4.1694 16 6 2.3491 0.4211 -4.6335 17 6 3.7708 0.9759 -4.4558 18 6 3.9788 1.7237 -5.7995 19 7 3.2768 0.9038 -6.8058 20 6 3.5451 0.8846 -8.1485 21 1 2.9714 0.2471 -8.8048 22 6 4.5538 1.6854 -8.6662 23 7 5.2528 2.4627 -7.8665 24 14 4.9193 1.6597 -10.4980 25 1 4.0935 2.6869 -11.1820 26 1 6.3581 1.9532 -10.7198 27 1 4.5972 0.3185 -11.0482 28 6 2.2387 0.1089 -6.1252 29 6 2.1157 -0.8216 -3.7648 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6054 -1.7197 1.2953 34 1 3.1263 -0.7994 1.2057 35 1 3.3612 1.4168 2.7725 36 1 -0.3254 0.2976 6.0597 37 1 -0.5346 1.9915 5.5549 38 1 -1.4954 0.7076 4.7826 39 1 -0.2951 -0.8002 2.9626 40 1 1.0511 1.7130 -2.0303 41 1 -0.1793 0.6495 -2.7654 42 1 0.4310 1.4070 -4.8441 43 1 1.7074 2.4252 -4.1113 44 1 3.8191 1.6653 -3.6128 45 1 4.4943 0.1688 -4.3411 46 1 5.0408 1.7875 -6.0370 47 1 3.5416 2.7210 -5.7516 48 1 5.9580 3.0220 -8.2282 49 1 2.4106 -0.9536 -6.2971 50 1 1.2523 0.3914 -6.4928 51 1 1.3171 -1.4367 -4.1796 52 1 3.0340 -1.4004 -3.6663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041764723.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:02 Heat of formation + Delta-G solvation = 73.170816 kcal Electronic energy + Delta-G solvation = -30744.257204 eV Core-core repulsion = 26746.302010 eV Total energy + Delta-G solvation = -3997.955193 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.53131 -40.32146 -38.55237 -35.67587 -35.29808 -33.35523 -32.59930 -30.73366 -30.10224 -29.18151 -28.52630 -27.99012 -26.04222 -25.64424 -24.23260 -22.71685 -22.31273 -21.31486 -20.33209 -20.25936 -19.16473 -18.50503 -17.31087 -16.88141 -16.56947 -15.90996 -15.71978 -15.25910 -14.91805 -14.85487 -14.63237 -14.26004 -13.87711 -13.69713 -13.58672 -13.35914 -13.29632 -13.00644 -12.82192 -12.60893 -12.60610 -12.44530 -12.32530 -11.90489 -11.77226 -11.48938 -11.38718 -11.27667 -11.17333 -10.99385 -10.90627 -10.76259 -10.71644 -10.21764 -10.03421 -9.95649 -9.72548 -9.71372 -9.62280 -9.44722 -8.63348 -8.61330 -8.52636 -6.81664 -5.63640 -3.05054 1.59203 2.22219 2.50746 2.73700 3.07919 3.40922 3.45972 3.48037 4.17434 4.42513 4.50192 4.51916 4.71442 4.71703 4.77100 4.82433 4.84977 4.95346 4.97956 5.05220 5.23186 5.26043 5.29882 5.32821 5.40536 5.50155 5.52371 5.55813 5.62711 5.69207 5.84392 5.87718 5.92503 5.97802 6.00348 6.03983 6.10721 6.14804 6.24711 6.37913 6.39423 6.41618 6.57686 6.68694 6.70355 6.78151 6.88134 7.41748 7.53445 7.64142 7.67239 7.88045 8.25905 8.37759 9.23506 9.84313 10.49715 11.40264 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027848 B = 0.001942 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.214514 B =14413.248547 C =14629.756437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 H 0.096 0.904 4 C -0.020 4.020 5 C -0.229 4.229 6 C 0.054 3.946 7 N -0.299 5.299 8 N -0.380 5.380 9 C 0.102 3.898 10 C 0.056 3.944 11 C 0.535 3.465 12 O -0.545 6.545 13 N -0.617 5.617 14 C 0.102 3.898 15 C -0.116 4.116 16 C -0.082 4.082 17 C -0.127 4.127 18 C 0.155 3.845 19 N -0.603 5.603 20 C -0.221 4.221 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.922 5.922 24 Si 0.914 3.086 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.152 3.848 29 C 0.121 3.879 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.183 0.817 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.172 0.828 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.104 0.896 47 H 0.011 0.989 48 H 0.251 0.749 49 H 0.026 0.974 50 H 0.025 0.975 51 H 0.068 0.932 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.244 -3.169 23.718 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.121 4.121 3 H 0.114 0.886 4 C -0.059 4.059 5 C -0.240 4.240 6 C -0.132 4.132 7 N -0.121 5.121 8 N -0.162 5.162 9 C -0.039 4.039 10 C -0.090 4.090 11 C 0.324 3.676 12 O -0.423 6.423 13 N -0.350 5.350 14 C -0.021 4.021 15 C -0.154 4.154 16 C -0.083 4.083 17 C -0.166 4.166 18 C 0.030 3.970 19 N -0.330 5.330 20 C -0.350 4.350 21 H 0.095 0.905 22 C -0.207 4.207 23 N -0.571 5.571 24 Si 0.745 3.255 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.025 3.975 29 C -0.001 4.001 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.200 0.800 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.189 0.811 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.122 0.878 47 H 0.029 0.971 48 H 0.062 0.938 49 H 0.044 0.956 50 H 0.043 0.957 51 H 0.087 0.913 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.858 -2.796 24.828 28.571 hybrid contribution 0.005 -0.385 -1.647 1.691 sum -13.853 -3.181 23.181 27.192 Atomic orbital electron populations 1.21918 0.93319 1.02486 1.02838 1.21232 0.97505 1.00934 0.92472 0.88620 1.19665 1.01786 0.96860 0.87626 1.20084 0.96563 1.04735 1.02630 1.23872 1.00126 0.96000 0.93226 1.77369 0.94038 1.18896 1.21754 1.48460 1.16065 1.28742 1.22945 1.21835 0.87786 1.04194 0.90121 1.22341 1.00093 0.96246 0.90322 1.20274 0.79798 0.84349 0.83173 1.90695 1.38560 1.26885 1.86114 1.48962 1.51195 1.29385 1.05493 1.22299 0.94323 0.87703 0.97767 1.22379 0.98911 0.99778 0.94336 1.21550 0.96756 0.94088 0.95910 1.22845 0.93717 0.99962 1.00083 1.21966 1.01048 0.90770 0.83222 1.44608 1.37013 1.47590 1.03750 1.19072 1.13798 1.20231 0.81875 0.90508 1.24786 0.98769 0.99078 0.98109 1.69810 1.24832 1.29869 1.32558 0.86080 0.77306 0.77579 0.84577 1.21701 1.21685 1.20715 1.21055 0.92893 0.95141 0.88379 1.22362 1.00708 0.95772 0.81271 0.91670 0.92339 0.91634 0.90822 0.90162 0.79997 0.90853 0.89343 0.89533 0.81120 0.91058 0.91592 0.90416 0.90207 0.92510 0.92116 0.87839 0.97068 0.93774 0.95616 0.95736 0.91342 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.73 37.16 0.32 -0.84 16 2 C -0.10 -0.99 2.09 -91.77 -0.19 -1.18 16 3 H 0.10 0.92 7.91 -51.93 -0.41 0.50 16 4 C -0.02 -0.20 4.52 -27.88 -0.13 -0.32 16 5 C -0.23 -2.07 4.82 -105.05 -0.51 -2.58 16 6 C 0.05 0.53 11.96 -17.36 -0.21 0.32 16 7 N -0.30 -3.26 12.58 30.63 0.39 -2.87 16 8 N -0.38 -3.17 4.01 -68.16 -0.27 -3.44 16 9 C 0.10 0.43 11.47 59.85 0.69 1.11 16 10 C 0.06 0.43 10.03 -17.22 -0.17 0.26 16 11 C 0.54 7.31 7.25 -10.99 -0.08 7.23 16 12 O -0.55 -9.43 16.17 5.56 0.09 -9.34 16 13 N -0.62 -8.20 3.31 -169.92 -0.56 -8.76 16 14 C 0.10 1.12 5.21 -2.72 -0.01 1.10 16 15 C -0.12 -1.58 6.04 -25.98 -0.16 -1.73 16 16 C -0.08 -1.35 0.68 -154.02 -0.10 -1.46 16 17 C -0.13 -2.43 5.94 -25.25 -0.15 -2.58 16 18 C 0.15 3.71 5.84 -2.30 -0.01 3.70 16 19 N -0.60 -15.22 3.41 -170.42 -0.58 -15.80 16 20 C -0.22 -6.13 10.28 -15.06 -0.15 -6.28 16 21 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 22 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 23 N -0.92 -26.86 10.10 55.49 0.56 -26.30 16 24 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.15 3.05 6.51 -3.65 -0.02 3.02 16 29 C 0.12 1.82 5.91 -2.62 -0.02 1.81 16 30 H 0.06 0.49 5.10 -51.93 -0.26 0.23 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.46 6.42 -51.93 -0.33 0.13 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.88 7.95 -51.93 -0.41 0.46 16 35 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.07 0.68 7.40 -51.93 -0.38 0.29 16 41 H 0.07 0.60 7.17 -51.93 -0.37 0.23 16 42 H 0.08 1.01 7.47 -51.93 -0.39 0.62 16 43 H 0.08 1.14 7.79 -51.93 -0.40 0.73 16 44 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 45 H 0.06 1.20 7.84 -51.93 -0.41 0.80 16 46 H 0.10 2.84 5.89 -51.93 -0.31 2.53 16 47 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.03 0.52 7.87 -51.93 -0.41 0.11 16 50 H 0.02 0.48 7.43 -51.93 -0.39 0.10 16 51 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 52 H 0.08 1.42 7.56 -51.93 -0.39 1.02 16 LS Contribution 404.17 15.07 6.09 6.09 Total: -1.00 -34.37 404.17 -8.95 -43.32 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -8.63 Total: -1.08 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.00 Total: 1.14 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.47 Total: -57.17 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.37 -8.95 -43.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041764723.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.492 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds