Wall clock time and date at job start Wed Apr 1 2020 04:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47190 * 2 1 4 4 C 1.53002 * 109.47009 * 119.99742 * 2 1 3 5 5 C 1.50704 * 109.47193 * 295.00259 * 4 2 1 6 6 C 1.39872 * 126.03833 * 269.69401 * 5 4 2 7 7 N 1.30840 * 108.19930 * 179.81680 * 6 5 4 8 8 N 1.40080 * 108.20690 * 0.43855 * 7 6 5 9 9 C 1.46502 * 126.03953 * 179.70005 * 8 7 6 10 10 C 1.34953 * 107.92663 * 359.71706 * 8 7 6 11 11 C 1.50697 * 109.47286 * 239.99618 * 2 1 3 12 12 O 1.21276 * 119.99973 * 239.99616 * 11 2 1 13 13 N 1.34774 * 119.99882 * 60.00668 * 11 2 1 14 14 C 1.47618 * 126.91887 * 0.02562 * 13 11 2 15 15 C 1.54349 * 107.21719 * 155.07074 * 14 13 11 16 16 C 1.53084 * 104.62945 * 2.12243 * 15 14 13 17 17 C 1.53640 * 111.78036 * 259.50119 * 16 15 14 18 18 C 1.55180 * 101.41574 * 272.05824 * 17 16 15 19 19 N 1.47571 * 105.00695 * 324.51813 * 18 17 16 20 20 C 1.36940 * 125.67347 * 203.86352 * 19 18 17 21 21 H 1.07995 * 120.00023 * 180.02562 * 20 19 18 22 22 C 1.38808 * 120.00131 * 359.97438 * 20 19 18 23 23 N 1.31620 * 119.99982 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99890 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47060 * 90.00057 * 24 22 20 26 26 H 1.48508 * 109.46867 * 209.99908 * 24 22 20 27 27 H 1.48498 * 109.47041 * 329.99542 * 24 22 20 28 28 C 1.47402 * 108.65067 * 23.86178 * 19 18 17 29 29 C 1.48683 * 127.06318 * 179.81822 * 13 11 2 30 30 H 1.09002 * 109.46833 * 60.00140 * 1 2 3 31 31 H 1.08999 * 109.46713 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47422 * 300.00090 * 1 2 3 33 33 H 1.08993 * 109.47217 * 55.00064 * 4 2 1 34 34 H 1.08993 * 109.47058 * 175.00333 * 4 2 1 35 35 H 1.08001 * 125.90023 * 359.97438 * 6 5 4 36 36 H 1.08993 * 109.47101 * 270.02032 * 9 8 7 37 37 H 1.08999 * 109.46925 * 30.02031 * 9 8 7 38 38 H 1.09000 * 109.47252 * 150.01882 * 9 8 7 39 39 H 1.07996 * 126.12952 * 179.97438 * 10 8 7 40 40 H 1.09002 * 109.91864 * 35.61906 * 14 13 11 41 41 H 1.09002 * 109.92021 * 274.51788 * 14 13 11 42 42 H 1.08995 * 110.40470 * 120.91435 * 15 14 13 43 43 H 1.09002 * 110.40328 * 243.22189 * 15 14 13 44 44 H 1.09002 * 111.03233 * 30.09039 * 17 16 15 45 45 H 1.09001 * 111.04165 * 154.02150 * 17 16 15 46 46 H 1.09002 * 110.33622 * 205.63762 * 18 17 16 47 47 H 1.08998 * 110.42700 * 83.44545 * 18 17 16 48 48 H 0.96999 * 120.00025 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.98548 * 238.52953 * 28 19 18 50 50 H 1.08995 * 109.98864 * 117.21727 * 28 19 18 51 51 H 1.09003 * 110.54006 * 99.10899 * 29 13 11 52 52 H 1.08996 * 110.86340 * 336.08111 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 6 2.3927 1.0628 3.0934 7 7 1.7179 1.5030 4.1244 8 7 0.5186 0.7833 4.2022 9 6 -0.5260 0.9560 5.2147 10 6 0.4957 -0.0975 3.1800 11 6 2.0324 -0.7105 -1.2304 12 8 2.7297 -1.6964 -1.1190 13 7 1.7069 -0.2500 -2.4545 14 6 0.8744 0.9285 -2.7661 15 6 1.2870 1.4212 -4.1694 16 6 2.3491 0.4211 -4.6335 17 6 3.7708 0.9759 -4.4558 18 6 3.9788 1.7237 -5.7995 19 7 3.2768 0.9038 -6.8058 20 6 3.5451 0.8846 -8.1485 21 1 2.9714 0.2471 -8.8048 22 6 4.5538 1.6854 -8.6662 23 7 5.2528 2.4627 -7.8665 24 14 4.9193 1.6597 -10.4980 25 1 4.0935 2.6869 -11.1820 26 1 6.3581 1.9532 -10.7198 27 1 4.5972 0.3185 -11.0482 28 6 2.2387 0.1089 -6.1252 29 6 2.1157 -0.8216 -3.7648 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6054 -1.7197 1.2953 34 1 3.1263 -0.7994 1.2057 35 1 3.3612 1.4168 2.7725 36 1 -0.3254 0.2976 6.0597 37 1 -0.5346 1.9915 5.5549 38 1 -1.4954 0.7076 4.7826 39 1 -0.2951 -0.8002 2.9626 40 1 1.0511 1.7130 -2.0303 41 1 -0.1793 0.6495 -2.7654 42 1 0.4310 1.4070 -4.8441 43 1 1.7074 2.4252 -4.1113 44 1 3.8191 1.6653 -3.6128 45 1 4.4943 0.1688 -4.3411 46 1 5.0408 1.7875 -6.0370 47 1 3.5416 2.7210 -5.7516 48 1 5.9580 3.0220 -8.2282 49 1 2.4106 -0.9536 -6.2971 50 1 1.2523 0.3914 -6.4928 51 1 1.3171 -1.4367 -4.1796 52 1 3.0340 -1.4004 -3.6663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041764723.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:01 Heat of formation + Delta-G solvation = 52.157275 kcal Electronic energy + Delta-G solvation = -30745.168419 eV Core-core repulsion = 26746.302010 eV Total energy + Delta-G solvation = -3998.866409 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.17044 -41.47107 -39.84992 -37.18271 -36.10098 -34.47496 -33.82413 -32.06887 -31.05131 -30.64426 -29.95339 -28.58928 -27.34145 -26.58083 -25.68665 -24.03666 -23.18008 -22.16085 -21.90386 -21.01026 -20.32698 -19.71723 -18.80925 -18.10863 -17.37237 -16.91290 -16.80710 -16.50591 -16.09713 -15.90029 -15.75343 -15.60811 -15.23012 -14.72227 -14.47498 -14.32728 -14.13435 -14.07034 -13.83382 -13.60676 -13.59019 -13.45406 -13.16608 -13.12263 -13.00370 -12.93256 -12.73297 -12.59839 -12.54022 -12.41537 -12.01771 -12.00325 -11.95677 -11.76148 -11.57343 -11.41448 -11.36676 -11.13043 -10.74358 -10.66929 -10.30962 -9.62211 -9.24233 -8.86059 -7.75658 -5.19272 0.99674 1.47208 1.49054 1.57702 1.70217 1.73688 1.80173 2.08927 2.51126 3.31403 3.43850 3.58281 3.69274 3.72114 3.82016 3.86504 4.01496 4.11269 4.16088 4.29210 4.34152 4.37538 4.38840 4.48116 4.50704 4.58104 4.62277 4.69090 4.72019 4.74320 4.75003 4.80884 4.90533 4.92537 4.96832 5.00633 5.05261 5.05908 5.10305 5.22434 5.28565 5.31538 5.37804 5.42839 5.44343 5.49836 5.64828 5.73659 5.83892 6.20459 6.31950 6.64513 6.78206 7.12354 7.21173 7.80165 8.44711 9.26431 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027848 B = 0.001942 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.214514 B =14413.248547 C =14629.756437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.103 0.897 4 C -0.011 4.011 5 C -0.243 4.243 6 C 0.041 3.959 7 N -0.337 5.337 8 N -0.381 5.381 9 C 0.092 3.908 10 C 0.068 3.932 11 C 0.531 3.469 12 O -0.589 6.589 13 N -0.617 5.617 14 C 0.108 3.892 15 C -0.113 4.113 16 C -0.072 4.072 17 C -0.113 4.113 18 C 0.161 3.839 19 N -0.626 5.626 20 C -0.235 4.235 21 H 0.082 0.918 22 C -0.070 4.070 23 N -0.950 5.950 24 Si 0.980 3.020 25 H -0.286 1.286 26 H -0.296 1.296 27 H -0.270 1.270 28 C 0.148 3.852 29 C 0.126 3.874 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.188 0.812 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.204 0.796 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.046 0.954 46 H 0.064 0.936 47 H -0.007 1.007 48 H 0.246 0.754 49 H 0.025 0.975 50 H 0.037 0.963 51 H 0.086 0.914 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.502 -3.479 24.898 30.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.121 0.879 4 C -0.050 4.050 5 C -0.254 4.254 6 C -0.144 4.144 7 N -0.160 5.160 8 N -0.163 5.163 9 C -0.048 4.048 10 C -0.079 4.079 11 C 0.322 3.678 12 O -0.469 6.469 13 N -0.349 5.349 14 C -0.014 4.014 15 C -0.151 4.151 16 C -0.073 4.073 17 C -0.151 4.151 18 C 0.036 3.964 19 N -0.352 5.352 20 C -0.364 4.364 21 H 0.100 0.900 22 C -0.263 4.263 23 N -0.600 5.600 24 Si 0.808 3.192 25 H -0.213 1.213 26 H -0.222 1.222 27 H -0.195 1.195 28 C 0.023 3.977 29 C 0.003 3.997 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.205 0.795 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.135 0.865 39 H 0.221 0.779 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.011 0.989 48 H 0.055 0.945 49 H 0.043 0.957 50 H 0.055 0.945 51 H 0.104 0.896 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.161 -3.099 26.032 31.333 hybrid contribution 1.001 -0.324 -1.988 2.250 sum -16.160 -3.423 24.043 29.171 Atomic orbital electron populations 1.21894 0.91070 1.03015 1.03896 1.21232 0.99177 1.00450 0.90300 0.87943 1.19503 1.00471 0.96922 0.88132 1.20015 0.97413 1.05101 1.02912 1.24089 1.00614 0.96397 0.93327 1.77311 0.95568 1.20493 1.22580 1.48806 1.15836 1.28155 1.23507 1.22179 0.88009 1.04580 0.89984 1.22804 1.00123 0.95739 0.89241 1.20998 0.78933 0.83904 0.84003 1.90678 1.40509 1.29025 1.86716 1.49026 1.51258 1.29912 1.04743 1.22446 0.95376 0.87259 0.96345 1.22369 0.98037 0.98437 0.96293 1.21405 0.95980 0.95905 0.94039 1.22636 0.95384 0.99290 0.97819 1.21685 0.98424 0.90706 0.85594 1.44903 1.38507 1.48275 1.03520 1.19467 1.13669 1.19898 0.83396 0.89998 1.25636 0.99004 0.99269 1.02342 1.70075 1.25239 1.30632 1.34070 0.85055 0.76515 0.77966 0.79662 1.21261 1.22245 1.19458 1.21248 0.91931 0.94278 0.90289 1.22162 1.00415 0.94837 0.82253 0.90817 0.92091 0.90294 0.91034 0.92257 0.79501 0.89855 0.89427 0.86527 0.77920 0.88914 0.88435 0.89249 0.90920 0.90702 0.93501 0.91796 0.98907 0.94478 0.95742 0.94477 0.89603 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.73 71.98 0.63 -1.03 16 2 C -0.09 -1.58 2.09 -11.54 -0.02 -1.60 16 3 H 0.10 1.69 7.91 -2.39 -0.02 1.67 16 4 C -0.01 -0.20 4.52 29.85 0.13 -0.07 16 5 C -0.24 -4.01 4.82 -20.14 -0.10 -4.10 16 6 C 0.04 0.78 11.96 85.24 1.02 1.80 16 7 N -0.34 -7.04 12.58 -57.02 -0.72 -7.75 16 8 N -0.38 -5.48 4.01 -369.57 -1.48 -6.97 16 9 C 0.09 0.52 11.47 127.77 1.47 1.98 16 10 C 0.07 0.84 10.03 83.54 0.84 1.68 16 11 C 0.53 13.68 7.25 87.66 0.64 14.31 16 12 O -0.59 -20.30 16.17 -3.02 -0.05 -20.35 16 13 N -0.62 -14.94 3.31 -809.89 -2.68 -17.62 16 14 C 0.11 1.93 5.21 86.62 0.45 2.38 16 15 C -0.11 -2.78 6.04 31.08 0.19 -2.59 16 16 C -0.07 -2.30 0.68 -51.87 -0.04 -2.34 16 17 C -0.11 -4.34 5.94 31.56 0.19 -4.15 16 18 C 0.16 7.99 5.84 86.92 0.51 8.50 16 19 N -0.63 -32.11 3.41 -693.08 -2.36 -34.47 16 20 C -0.24 -13.21 10.28 84.03 0.86 -12.34 16 21 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 22 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 23 N -0.95 -57.31 10.10 21.65 0.22 -57.09 16 24 Si 0.98 46.02 29.55 68.60 2.03 48.05 16 25 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 28 C 0.15 5.85 6.51 86.14 0.56 6.41 16 29 C 0.13 3.63 5.91 86.10 0.51 4.14 16 30 H 0.07 0.75 5.10 -2.39 -0.01 0.74 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.75 6.42 -2.39 -0.02 0.74 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.32 7.95 -2.39 -0.02 1.30 16 35 H 0.19 3.02 8.06 -2.91 -0.02 3.00 16 36 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.20 1.06 8.06 -2.91 -0.02 1.03 16 40 H 0.09 1.34 7.40 -2.39 -0.02 1.32 16 41 H 0.10 1.25 7.17 -2.39 -0.02 1.23 16 42 H 0.09 2.02 7.47 -2.39 -0.02 2.01 16 43 H 0.07 1.92 7.79 -2.39 -0.02 1.90 16 44 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 45 H 0.05 1.91 7.84 -2.39 -0.02 1.90 16 46 H 0.06 3.70 5.89 -2.39 -0.01 3.68 16 47 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 48 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 49 H 0.02 0.98 7.87 -2.39 -0.02 0.96 16 50 H 0.04 1.39 7.43 -2.39 -0.02 1.38 16 51 H 0.09 2.20 8.09 -2.39 -0.02 2.18 16 52 H 0.06 2.04 7.56 -2.39 -0.02 2.02 16 Total: -1.00 -78.03 404.17 4.15 -73.88 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.90 Total: 12.90 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 8.30 Total: 9.42 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -7.03 Total: -123.90 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -78.03 4.15 -73.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041764723.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.038 kcal (2) G-P(sol) polarization free energy of solvation -78.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds